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October 2021
PUBLICATIONS - Back

Pathology Archives

1. Chen SY, Clark DJ, Zhang H. High-throughput analyses of glycans, glycosites, and intact glycopeptides using C4-and C18/MAX-Tips and liquid handling system. Curr Protoc. 2021 Jul;1(7):e186.
Key words: glycoproteomics, high-throughput, mass spectrometry, sample processing

https://currentprotocols.onlinelibrary.wiley.com/doi/10.1002/cpz1.186
PMID: 34232571

2. Fujikura K, Alruwaii ZI, Haffner MC, Trujillo MA, Roberts NJ, Hong SM, Macgregor-Das A, Goggins MG, Roy S, Meeker AK, Ding D, Wright M, He J, Hruban RH, Wood LD. Downregulation of 5-hydroxymethylcytosine is an early event in pancreatic tumorigenesis. J Pathol 2021 Jul;254(3):279-88.
Key words: 5-hydroxymethylcytosine, IOPN, epigenetics, IPMN, MCN

https://onlinelibrary.wiley.com/doi/10.1002/path.5682
PMID: 33870509

3. Hopkins MR, Butcher MR, Martin KM, Small LR, Sokoll LJ. Quality improvement in critical value delivery at a tertiary care center. J Appl Lab Med. 2021 Jul 7;6(4):985-91.
Key words: critical value, quality improvement, laboratory information system

https://academic.oup.com/jalm/article/6/4/985/6255453
PMID: 33904919.

4. Jarrell AS, Crow JR, Strout SE, Kruer RM, Toman LP, Dioverti-Prono MV, Lees L, Avery RK, Marzinke MA. Valganciclovir dosing for cytomegalovirus prophylaxis in solid organ transplant recipients on continuous veno-venous hemodialysis. Clin Infect Dis. 2021 Jul;73(1):101-6.
Key words: cytomegalovirus, pharmacokinetic, renal dialysis, transplantation, valganciclovir
https://academic.oup.com/cid/article/73/1/101/5831845
PMID: 32379860

5. Lee JK, Liu D, Jiang D, Kulikowicz E, Tekes A, Liu P, Qin Q, Koehler RC, Aggarwal M, Zhang J, Martin LJ. Fractional anisotropy from diffusion tensor imaging correlates with acute astrocyte and myelin swelling in neonatal swine models of excitotoxic and hypoxic-ischemic brain injury. J Comp Neurol. 2021 Jul;529(10):2750-70.
Key words: GLT-1, aquaporin, astrocytes, magnetic resonance imaging, myelin sheath

https://onlinelibrary.wiley.com/doi/10.1002/cne.25121
PMID: 33543493

6. Matoso A, Parimi V, Epstein JI. Noninvasive low-grade papillary urothelial carcinoma with degenerative nuclear atypia: a grading pitfall. Hum Pathol. 2021 Jul;113:1-8.
Key words: bladder cancer, papillary urothelial carcinoma, grade, degenerative atypia, Ki67
https://www.sciencedirect.com/science/article/pii/S0046817721000538?via%3Dihub
PMID: 33887303

7. Ribeiro EA, Maleki Z. p16 immunostaining in cytology specimens: its application, expression, interpretation, and challenges. J Am Soc Cytopathol. 2021 Jul-Aug;10(4):414-22.
Key words: cytology, cytopathology, HPV-related head and neck squamous cell carcinoma, human papillomavirus (HPV), serous carcinoma

https://www.sciencedirect.com/science/article/pii/S2213294520303409?via%3Dihub
PMID: 33422456

8. Sivay MV, Palumbo PJ, Zhang Y, Cummings V, Guo X, Hamilton EL, McKinstry L, Ogendo A, Kayange N, Panchia R, Dominguez K, Chen YQ, Sandfort TGM, Eshleman SH. Human Immunodeficiency Virus (HIV) drug resistance, phylogenetic analysis, and superinfection among men who have sex with men and transgender women in sub-Saharan Africa: HIV Prevention Trials Network (HPTN) 075 study. Clin Infect Dis. 2021 Jul 1;73(1):60-7.
Key words: HIV drug resistance, men who have sex with men, phylogenetic analysis, sub-Saharan Africa, transgender women
https://academic.oup.com/cid/article/73/1/60/5881687
PMID: 32761071

9. White MJ, Birkness JE, Salimian KJ, Meiss AE, Butcher M, Davis K, Ware AD, Zarella MD, Lecksell K, Rooper LM, Cimino-Mathews A, VandenBussche CJ, Halushka MK, Thompson ED. Continuing undergraduate pathology medical education in the Coronavirus Disease 2019 (COVID-19) global pandemic: The Johns Hopkins Virtual Surgical Pathology Clinical Elective. Arch Pathol Lab Med. 2021 Jul 1;145(7):814-20.
Key words: COVID-19, Pathology education, JHUSOM, virtual surgical pathology

https://meridian.allenpress.com/aplm/article/145/7/814/463082/Continuing-Undergraduate-Pathology-Medical
PMID: 33740819

1. Chen MW, Santos P, Kulikowicz E, Koehler RC, Lee JK, Martin LJ. Targeting the mitochondrial permeability transition pore for neuroprotection in a piglet model of neonatal hypoxic-ischemic encephalopathy. J Neurosci Res. 2021 Jun;99(6):1550-64.
Key words: ANT, CypD, RRID:AB_10862212, VDAC, ischemic-necrosis, mitochondria, neonatal brain damage
https://onlinelibrary.wiley.com/doi/10.1002/jnr.24821
PMID: 33675112

2. Guan J, Peske JD, Taylor JA, Shastri N. Review: The nonclassical immune surveillance for ERAAP function. Curr Opin Immunol. 2021 Jun;70:105-11.
Key words: ERAAP function, antigen processing, MHC I mediated antigen presentation pathway

https://www.sciencedirect.com/science/article/pii/S0952791521000662?via%3Dihub
PMID: 34098489

3. Hong X, Rosenberg AZ, Zhang B, Binns-Roemer E, David V, Lv Y, Hjorten RC, Reidy KJ, Chen TK, Wang G, Ji Y, Simpson CL, Davis RL, Kopp JB, Wang X, Winkler CA. Joint associations of maternal-fetal APOL1 genotypes and maternal country of origin with preeclampsia risk. Am J Kidney Dis 2021 Jun;77(6):879-88.e1
Key words: African Americans, ancestry, apolipoprotein L1 gene, APOL1, country of origin

https://www.sciencedirect.com/science/article/pii/S027263862031163X?via%3Dihub
PMID: 33359152

4. Kang TH, Yang A, Tsai Y, Ferrall L, Hung CF. Correspondence: Targeted tumor coating with antigenic, CTL-recognizable peptides via Annexin A5 chimeric constructs following chemotherapy redirects adaptive CD8+ T cell immunity for tumor clearance. Cell Mol Immunol. 2021 Jun;18(6):1578-80.
Key words: tumor coating; chemotherapy; tumor clearance, Annexin A5
https://www.nature.com/articles/s41423-020-00563-x
PMID: 33139904

5. Lotan TL, Kaur HB, Salles DC, Murali S, Schaeffer EM, Lanchbury JS, Isaacs WB, Brown R, Richardson AL, Cussenot O, Cancel-Tassin G, Timms KM, Antonarakis ES. Homologous recombination deficiency (HRD) score in germline BRCA2- versus ATM-altered prostate cancer. Mod Pathol. 2021 Jun;34(6):1185-93.
Key words: prostate cancer, BRCA2, precision oncology, PARP inhibitors, HRD scores

https://www.nature.com/articles/s41379-020-00731-4
PMID: 33462368

6. Nauen DW, Hooper JE, Stewart CM, Solomon IH. Research letter: assessing brain capillaries in Coronavirus disease 2019. JAMA Neurol. 2021 Jun;78(6):760-2.
Key words: COVID-19, dysexecutive syndrome, neuropathology, cortical capillaries

https://jamanetwork.com/journals/jamaneurology/fullarticle/2776455
PMID: 33576767

7. Rooper LM, Mansour M, Yonescu R, Oliai BR, Bishop JA, Westra WH. The decline of salivary adenocarcinoma not otherwise specified as a tumor entity: reclassification using contemporary immunohistochemical profiling and diagnostic criteria. Am J Surg Pathol. 2021 Jun;45(6):753-64.
Key words: salivary gland neoplasms, adenocarcinoma not otherwise specified, salivary duct carcinoma, polymorphous adenocarcinoma, immunohistochemistry
https://journals.lww.com/ajsp/Fulltext/2021/06000/The_Decline_of_
Salivary_Adenocarcinoma_Not.3.aspx
PMID: 33284193

8. Sadegh-Nasseri S. Review: Partnering for the major histocompatibility complex class II and antigenic determinant requires flexibility and chaperons. Curr Opin Immunol. 2021 Jun 16;70:112-21.
Key words: MHC II flexibility, Ag processing and presentation, epitope capture, MHC II accessory molecules, H2-O
https://www.sciencedirect.com/science/article/pii/S0952791521000637?via%3Dihub
PMID: 34146954

9. Vidal I, Zheng Q, Hicks JL, Chen J, Platz EA, Trock BJ, Kulac I, Baena-Del Valle JA, Sfanos KS, Ernst S, Jones T, Maynard JP, Glavaris SA, Nelson WG, Yegnasubramanian S, De Marzo AM. GSTP1 positive prostatic adenocarcinomas are more common in Black than White men in the United States. PLoS One. 2021 Jun 30;16(6):e0241934.
Key words: adenocarcinomas, prostate cancer, GSTP1, in situ hybridization assay

https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0241934
PMID: 34191807

10. Zhang SX, Babady NE, Hanson KE, Harrington AT, Larkin PMK, Leal SM Jr, Luethy PM, Martin IW, Pancholi P, Procop GW, Riedel S, Seyedmousavi S, Sullivan KV, Walsh TJ, Lockhart SR; Fungal Diagnostics Laboratories Consortium (FDLC). Recognition of diagnostic gaps for laboratory diagnosis of fungal diseases: expert opinion from the Fungal Diagnostics Laboratories Consortium (FDLC). J Clin Microbiol. 2021 Jun ;59(7):e0178420.
Key words: Fungal infections, diagnostic algorithms, laboratory diagnostics, fungal diagnostic capacity
https://journals.asm.org/doi/epub/10.1128/JCM.01784-20
PMID: 33504591

1. Argani P, Lian DWQ, Agaimy A, Metzler M, Wobker SE, Matoso A, Epstein JI, Sung YS, Zhang L, Antonescu CR. Pediatric mesothelioma with ALK Fusions: A molecular and pathologic study of 5 cases. Am J Surg Pathol. 2021 May 1;45(5):653-61.
Key words: mesothelioma, ALK, translocation, asbestos exposure, pediatric
https://journals.lww.com/ajsp/Fulltext/2021/05000/Pediatric_
Mesothelioma_With_ALK_Fusions__A.6.aspx
PMID: 33399341

2. Banet N, Shahi M, Batista D, Yonescu R, Tanner EJ, Fader AN, Cimino-Mathews A. HER-2 Amplification in uterine serous carcinoma and serous endometrial intraepithelial carcinoma. Am J Surg Pathol. 2021 May 1;45(5):708-15.
Key words: uterine serous carcinoma, HER-2, serous endometrial intraepithelial carcinoma
https://journals.lww.com/ajsp/Fulltext/2021/05000/HER_2_Amplification_in_
Uterine_Serous_Carcinoma.13.aspx
PMID: 33739786

3. Chavez-Valdez R, Lechner C, Emerson P, Northington FJ, Martin LJ. Accumulation of PSA-NCAM marks nascent neurodegeneration in the dorsal hippocampus after neonatal hypoxic-ischemic brain injury in mice. J Cereb Blood Flow Metab 2021 May;41(5):1039-57.
Key words: CA1, interneurons, memory, neuronal cell death, tauopathy
https://journals.sagepub.com/doi/10.1177/0271678X20942707?url_ver=Z39.88-2003&rfr_id=ori:rid:crossref.org&rfr_dat=cr_pub 0pubmed
PMID: 32703109

4. Chen T, Zeineldin M, Johnson BA, Dong Y, Narkar A, Li T, Zhu J, Li R, Larman TC. Colonic epithelial adaptation to EGFR-independent growth induces chromosomal instability and is accelerated by prior injury. Neoplasia. 2021 May;23(5):488-501.
Key words: chromosomal instability, colitis, colorectal cancer, intestinal organoids, transformation,
https://www.sciencedirect.com/science/article/pii/S1476558621000208
PMID: 33906087

5. Durand CM, Zhang W, Brown DM, …, Tobian AAR, Segev DL; HOPE in Action Investigators. A prospective multicenter pilot study of HIV-positive deceased donor to HIV-positive recipient kidney transplantation: HOPE in action. Am J Transplant 2021 May;21(5):1754-64.
Key words: infectious disease, kidney transplantation/nephrology, clinical trial, ethics and public policy, clinical trial
https://onlinelibrary.wiley.com/doi/10.1111/ajt.16205
PMID: 32701209

6. Fine SW, Trpkov K, Amin MB, …, Epstein JI. Practice patterns related to prostate cancer grading: results of a 2019 Genitourinary Pathology Society clinician survey. Urol Oncol. 2021 May;39(5):295.e1-.e8.
Key words: active surveillance, cribriform, Gleason grade, grade groups, prostate cancer.
https://www.sciencedirect.com/science/article/pii/S1078143920303963?via%3Dihub
PMID: 32948433

7. Foster JW, Parikh RN, Wang J, Bower KS, Matthaei M, Chakravarti S, Jun AS, Eberhart CG, Soiberman US. Transcriptomic and immunohistochemical analysis of progressive keratoconus reveal altered WNT10A in epithelium and Bowman's layer. Invest Ophthalmol Vis Sci. 2021 May 3;62(6):16.
Key words: WNT10A, keratoconus, RNA sequencing, Bowman's layer, corneal epithelial patient samples
https://iovs.arvojournals.org/article.aspx?articleid=2772600
PMID: 33988693

8. Fujikura K, Hosoda W, Felsenstein M, Song Q, Reiter JG, Zhen L, Beleva Guthrie V, Rincon N, Dal Molin M, Dudley J, Cohen JD, Wang P, Fischer CG, Braxton AM, Noe M, Jongepier M, Fernandez-Del Castillo C, Mino-Kenudson M, Schmidt CM, Yip-Schneider MT, Lawlor RT, Salvia R, Roberts NJ, Thompson ED, Karchin R, Lennon AM, Jiao Y, Wood LD. Multiregion whole-exome sequencing of intraductal papillary mucinous neoplasms reveals frequent somatic KLF4 mutations predominantly in low-grade regions. Gut. 2021 May;70(5):928-39.
Key words: molecular genetics, mutations, pancreatic cancer, pancreatic pathology, pancreatic tumours
https://gut.bmj.com/content/70/5/928.long
PMID: 33028669

9. Petersen MR, Patel EU, Abraham AG, Quinn TC, Tobian AAR. Changes in cytomegalovirus seroprevalence among u.S. Children Aged 1-5 Years: The National Health and Nutrition Examination Surveys. Clin Infect Dis. 2021 May 4;72(9):e408-e11.
Key words: CMV, NHANES, childhood vaccination, cytomegalovirus
https://academic.oup.com/cid/article/72/9/e408/5890412
PMID: 32776128

10. Rositch AF, Patel EU, Petersen MR, Quinn TC, Gravitt PE, Tobian AAR. Importance of lifetime sexual history on the prevalence of genital human papillomavirus (HPV) among unvaccinated adults in the National Health and Nutrition Examination Surveys: implications for adult HPV vaccination. Clin Infect Dis. 2021 May 4;72(9):e272-9.
Key words: HPV prevalence, HPV vaccination, NHANES, genital HPV, sexual behavior
https://academic.oup.com/cid/article/72/9/e272/5876408
PMID: 32710745

11. Tamma PD, Smith TT, Adebayo A, Karaba SM, Jacobs E, Wakefield T, Nguyen K, Whitfield NN, Simner PJ. Prevalence of blaCTX-M genes in gram-negative bloodstream isolates across 66 hospitals in the United States. J Clin Microbiol. 2021 May;59(6):e00127-21.
Key words: AMR, ESBLs, antimicrobial resistance, ceftriaxone
https://jcm.asm.org/content/59/6/e00127-21.long
PMID: 33827899

12. Verma RX, Kannan S, Lin BL, Fomchenko KM, Nieuwenhuis TO, Patil AH, Lukban C, Yang X, Fox-Talbot K, McCall MN, Kwon C, Kass DA, Rosenberg AZ, Halushka MK. Single cell RNA-seq analysis of the flexor digitorum brevis mouse myofibers. Skelet Muscle. 2021 May 17;11(1):13.
Key words: fiber, single cell RNA-sequencing, skeletal muscle, twitch
https://skeletalmusclejournal.biomedcentral.com/articles/10.1186/s13395-021-00269-2
PMID: 34001262

13. Xing D, Adams E, Huang J, Ronnett BM. Refined diagnosis of hydatidiform moles with p57 immunohistochemistry and molecular genotyping: updated analysis of a prospective series of 2217 cases. Mod Pathol. 2021 May;34(5):961-82.
Key words: hydatidiform moles, molecular genotyping, diagnosis, gynecologic pathology
https://www.nature.com/articles/s41379-020-00691-9.pdf
PMID: 33024305

14. Yee R, Dien Bard J, Simner PJ. The genotype-to-phenotype dilemma: how should laboratories approach discordant susceptibility results? J Clin Microbiol. 2021 May 19;59(6):e00138-20.
Key words: antimicrobial resistance, antimicrobial susceptibility testing, molecular methods
https://jcm.asm.org/content/59/6/e00138-20.long
PMID: 33441396

15. Yuan M, White D, Resar L, Bar E, Groves M, Cohen A, Jackson E, Bynum J, Rubens J, Mumm J, Chen L, Jiang L, Raabe E, Rodriguez F, Eberhart CG. Conditional reprograming culture conditions facilitate growth of lower grade glioma models. Neuro Oncol. 2021 May 5;23(5):770-82.
Key words: BRAFV600E, NF1, conditional reprogramming, enescence, low-grade glioma

https://academic.oup.com/neuro-oncology/article/23/5/770/6015051
PMID: 33258947

1. Bhattacharya D, Gupta A, Tierney C, Huang S, Petes MG, Chipato T, Martinson F, Mohtashemi N, Dula D, George K, Chaktoura N, Klingman K, Gnanashanmugam D, Currier JS, Fowler MG. Hepatotoxicity and liver-related mortality in women of child-bearing potential living with HIV and high CD4 counts initiating Efavirenz-containing regimens. Clin Infect Dis. 2021 Apr 26;72(8):1342-9.
Key words: HIV, real-world, hepatotoxicity, liver enzyme elevation, anti-retroviral agents

https://academic.oup.com/cid/article/72/8/1342/5803286
PMID: 32161944

2. Epstein JI, Amin MB, Fine SW, Algaba F, Aron M, Baydar DE, Beltran AL, Brimo F, Cheville JC, Colecchia M, et al. The 2019 Genitourinary Pathology Society (GUPS) white paper on contemporary grading of prostate cancer. Arch Pathol Lab Med. 2021 Apr1;145(4):461-93.
Key words: genitourinary pathology, prostate cancer, cancer grading
https://meridian.allenpress.com/aplm/article/145/4/461/
442303/The-2019-Genitourinary-Pathology-Society-GUPS

PMID: 32589068

3. Grabowski MK, Patel EU, Nakigozi G, Ssempijja V, Ssekubugu R, Ssekasanvu J, Ndyanabo A, Kigozi G, Nalugoda F, Gray RH, Kalibbala S, Serwadda DM, Laeyendecker O, Wawer MJ, Chang LW, Quinn TC, Kagaayi J, Tobian AAR, Reynolds SJ. Prevalence and predictors of persistent HIV viremia and viral rebound following universal test and treat: a population-based study. J Infect Dis. 2021 Apr 8;223(7):1150-60.
Key words: HIV, test and treat, viremia, population viral load, antiretroviral therapy
https://academic.oup.com/jid/article/223/7/1150/6104546
PMID: 33471100

4. Hempel Sullivan H, Maynard JP, Heaphy CM, Lu J, De Marzo AM, Lotan TL, Joshu CE, Sfanos KS. Differential mast cell phenotypes in benign versus cancer tissues and prostate cancer oncologic outcomes. J Pathol. 2021 Apr;253(4):415-26.
Key words: CXCR4, KIT, TFE3, mast cells, metastases, microenvironment, prostate cancer
https://onlinelibrary.wiley.com/doi/10.1002/path.5606
PMID: 33338262

5. Morgenlander WR, Henson SN, Monaco DR, Chen A, Littlefield K, Bloch EM, Fujimura E, Ruczinski I, Crowley AR, Natarajan H, Butler SE, Weiner JA, Li MZ, Bonny TS, Benner SE, Balagopal A, Sullivan D, Shoham S, Quinn TC, Eshleman SH, Casadevall A, Redd AD, Laeyendecker O, Ackerman ME, Pekosz A, Elledge SJ, Robinson M, Tobian AA, Larman HB. Antibody responses to endemic coronaviruses modulate COVID-19 convalescent plasma functionality. J Clin Invest. 2021 Apr 1;131(7):e146927.
Key words: Adaptive immunity, Immunology, Infectious disease
https://www.jci.org/articles/view/146927
PMID: 33571169

6. Negri S, Wang Y, Sono T, Qin Q, Hsu GC, Cherief M, Xu J, Lee S, Tower RJ, Yu V, Piplani A, Meyers CA, Broderick K, Lee M, James AW. Systemic DKK1 neutralization enhances human adipose-derived stem cell mediated bone repair. Stem Cells Transl Med. 2021 Apr;10(4):610-22.
Key words: Wnt signaling, adipose stem cell, adipose stromal cell, bone healing, bone repair
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7980212/
PMID: 33377628

7. Peng S, Tan M, Li YD, Cheng MA, Farmer E, Ferrall L, Gaillard S, Roden RBS, Hung CF, Wu TC. PD-1 blockade synergizes with intratumoral vaccination of a therapeutic HPV protein vaccine and elicits regression of tumor in a preclinical model. Cancer Immunol Immunother. 2021 Apr;70(4):1049-62.
Key words: HPV-associated cancers, human papillomavirus, Intratumoral, PD-1, therapeutic vaccine
https://link.springer.com/article/10.1007/s00262-020-02754-x
PMID: 33108473

8. Rau RE, Dai Y, Devidas M, Rabin KR, Zweidler-McKay P, Angiolillo A, Schore RJ, Burke MJ, Salzer WL, Heerema NA, Carroll AJ, Winick NJ, Hunger SP, Raetz EA, Loh ML, Wood BL, Borowitz MJ. Prognostic impact of minimal residual disease at the end of consolidation in NCI standard-risk B-lymphoblastic leukemia: A report from the Children's Oncology Group. Pediatr Blood Cancer. 2021 Apr;68(4):e28929.
Key words: ALL, B-lymphoblastic leukemia, minimal residual disease
https://onlinelibrary.wiley.com/doi/10.1002/pbc.28929
PMID: 33559396

9. Rooper LM, Lombardo KA, Oliai BR, Ha PK, Bishop JA. MYB RNA in situ hybridization facilitates sensitive and specific diagnosis of adenoid cystic carcinoma regardless of translocation status. Am J Surg Pathol. 2021 Apr 1;45(4):488-97.
Key words: salivary gland, neoplasms, adenoid cystic carcinoma, in situ hybridization, MYB
https://journals.lww.com/ajsp/Fulltext/2021/04000/
MYB_RNA_In_Situ_Hybridization_Facilitates.5.aspx
PMID: 33165092

10. Sidhom JW, Larman HB, Pardoll DM, Baras AS. DeepTCR is a deep learning framework for revealing sequence concepts within T-cell repertoires. Nat Commun. 2021 Mar 11;12(1):1605. doi: 10.1038/s41467-021-21879-w. Erratum in: Nat Commun. 2021 Apr 13;12(1):2309.
Key words: Computational models, functional clustering, machine learning, adaptive immunity, immunogenetics
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7952906/
PMID: 33707415

11. Tseng SH, Lam B, Kung YJ, Lin J, Liu L, Tsai YC, Ferrall L, Roden RBS, Wu TC, Hung CF. A novel pseudovirus-based mouse model of SARS-CoV-2 infection to test COVID-19 interventions. J Biomed Sci. 2021 Apr 30;28(1):34.
Key words: adenovirus, COVID-19, pseudovirus, SARS-CoV-2
https://jbiomedsci.biomedcentral.com/articles/10.1186/s12929-021-00729-3
PMID: 33926459.

12. Uner M, Alhasson B, Obhrai J, Bagnasco SM. ANCA-associated pauci-immune necrotizing glomerulonephritis during the treatment with pembrolizumab. Virchows Arch. 2021 Apr;478(4):801-4.
Key words: ANCA, crescentic glomerulonephritis, immune checkpoint inhibitor, immune-related adverse events, PD-1
https://link.springer.com/article/10.1007%2Fs00428-020-02882-w
PMID: 32691143

13. Vogt SL, Patel M, Lakha A, Philip V, Omar T, Ashmore P, Pather S, Haley LM, Zheng G, Stone J, Mayne E, Stevens W, Wagner-Johnston N, Gocke CD, Martinson NA, Ambinder RF, Xian RR. Feasibility of cell-free DNA collection and clonal immunoglobulin sequencing in South African patients with HIV-associated lymphoma. JCO Glob Oncol. 2021 Apr;7:611-21.
Key words: cell-free DNA, liquid biopsy, HIV lymphoma, immunoglobulin sequencing, global oncology
https://ascopubs.org/doi/pdfdirect/10.1200/GO.20.00651
PMID: 33909482.

14. Wangsiricharoen S, Larman TC, Wakely PE Jr, Siddiqui MT, Ali SZ. Cytopathology of extra-renal perivascular epithelioid cell tumor (PEComa): a series of 7 cases and review of the literature. J Am Soc Cytopathol. 2021 Mar-Apr;10(2):175-86.
Key words: cytopathology, extra-renal, fine-needle aspiration, PEComa, perivascular epithelioid cell tumor
https://www.sciencedirect.com/science/article/pii/S2213294520303094?via%3Dihub
PMID: 33162379

15. Zhang H, Liu AP, Devidas M, Lee SHR, Cao X, Pei D, Borowitz M, Wood B, Gastier-Foster JM, Dai Y, Raetz E, Larsen E, Winick N, Bowman WP, Karol S, Yang W, Martin PL, Carroll WL, Pui CH, Mullighan CG, Evans WE, Cheng C, Hunger SP, Relling MV, Loh ML, Yang JJ. Association of GATA3 polymorphisms with minimal residual disease and relapse risk in childhood acute lymphoblastic leukemia. J Natl Cancer Inst. 2021 Apr 6;113(4):408-17.
Key words: alleles, polymorphism, genome, GATA3 gene, leukemia

https://academic.oup.com/jnci/article/113/4/408/5902455
PMID: 32894760

1. Ahmad Y, Heroes AS, Hume HA, Farouk M, Owusu-Ofori A, Gehrie EA, Goel R, Ness PM, Tobian AAR, Bloch EM. Bacterial contamination of blood products in Africa. Transfusion. 2021 Mar;61(3):767-80.
Key words: Africa, blood transfusion, bacterial contamination, platelets

https://onlinelibrary.wiley.com/doi/epdf/10.1111/trf.16262
PMID: 33469916

2. Early CA, Wangsiricharoen S, Jones RM, VandenBussche CJ. Review of SMARCA4 (BRG1)-deficient carcinomas following a malignant pleural effusion specimen confounded by reduced claudin-4 expression. J Am Soc Cytopathol 2021 Mar-Apr:10(2):197-207.
Key words: SMARCA4, BRG1, pleural fluid, cancer, INI1 https://www.sciencedirect.com/science/article/pii/S2213294520302672?via%3Dihub
PMID: 32893180

3. Hooper JE. Rapid autopsy programs and research support: the pre- and post-COVID eras. AJSP: Reviews & Reports. 2021 March;26(2):100-7.
Key words: autopsy; cancer research, COVID-19, postmortem, rapid autopsy
https://journals.lww.com/pathologycasereviews/Fulltext/2021/03000/
Rapid_Autopsy_Programs_and_Research_Support__The.4.aspx
No PMID available

4. Huang C, Chen L, Savage SR, Eguez RV, Dou Y, Li Y, da Veiga Leprevost F, Jaehnig EJ, Lei JT, Wen B, Schnaubelt M, Krug K, Song X, Cie?lik M, Chang HY, Wyczalkowski MA, Li K, Colaprico A, Li QK, Clark DJ, Hu Y, Cao L, Pan J, Wang Y, Cho KC, Shi Z, Liao Y, Jiang W, Anurag M, Ji J, Yoo S, Zhou DC, Liang WW, Wendl M, Vats P, Carr SA, Mani DR, Zhang Z, Qian J, Chen XS, Pico AR, Wang P, Chinnaiyan AM, Ketchum KA, Kinsinger CR, Robles AI, An E, Hiltke T, Mesri M, Thiagarajan M, Weaver AM, Sikora AG, Lubi?ski J, Wierzbicka M, Wiznerowicz M, Satpathy S, Gillette MA, Miles G, Ellis MJ, Omenn GS, Rodriguez H, Boja ES, Dhanasekaran SM, Ding L, Nesvizhskii AI, El-Naggar AK, Chan DW, Zhang H, Zhang B; Clinical Proteomic Tumor Analysis Consortium. Proteogenomic insights into the biology and treatment of HPV-negative head and neck squamous cell carcinoma. Cancer Cell. 2021 Mar 8;39(3):361-79.e16.
Key words: HNSCC, proteogenomics, proteomics, immunotherapy,EGFR mAb, immune evasion https://www.sciencedirect.com/science/article/pii/S1535610820306553?via%3Dihub
PMID: 33417831

5. Jenike AE, Halushka MK. miR-21: a non-specific biomarker of all maladies. Biomark Res. 2021 Mar 12;9(1):18. doi: 10.1186/s40364-021-00272-1.
Key words: biomarker, heart disease, plasma, serum, cancer

https://biomarkerres.biomedcentral.com/articles/10.1186/s40364-021-00272-1
PMID: 33712063

6. Kared H, Redd AD, Bloch EM, Bonny TS, Sumatoh H, Kairi F, Carbajo D, Abel B, Newell EW, Bettinotti MP, Benner SE, Patel EU, Littlefield K, Laeyendecker O, Shoham S, Sullivan D, Casadevall A, Pekosz A, Nardin A, Fehlings M, Tobian AA, Quinn TC. SARS-CoV-2-specific CD8+ T cell responses in convalescent COVID-19 individuals. J Clin Invest. 2021 Mar;131(5):e145476.
Key words: SARS-CoV-2, T-cell response, CD8+, immunology
https://www.jci.org/articles/view/145476/pdf
PMID: 33427749

7. Liu Y, DeLeon EMB, Okour S, Vang R, Hung CF, Wu TC, Ronnett BM, Xing D. Coexistence of conventional leiomyoma, fumarate hydratase-deficient atypical leiomyoma, and perivascular epithelioid cell tumor in a uterus: a case study. Int J Gynecol Pathol. 2021 Mar 1;40(2):134-40.
Key words: atypical leiomyoma, fumarate hydratase, perivascular epithelioid cell tumor, hereditary leiomyomatosis and renal cell cancer syndrome
https://journals.lww.com/intjgynpathology/Abstract/9000/
Coexistence_of_Conventional_Leiomyoma,_Fumarate.99038.aspx
PMID: 32265359

8. McDonald TM, Epstein JI. Aberrant GATA3 Staining in prostatic adenocarcinoma: a potential diagnostic pitfall. Am J Surg Pathol. 2021 Mar 1;45(3):341-6.
Key words: GATA3, prostate adenocarcinoma, prostate cancer

https://journals.lww.com/ajsp/Fulltext/2021/03000/Aberrant_
GATA3_Staining_in_Prostatic.5.aspx
PMID: 32769430.

9. Miller DL, Ribeiro EA, Roy-Chowdhuri S, Illei PB, Siddiqui MT, Ali SZ. Renal medullary carcinoma involving serous cavity fluids: a cytomorphologic study of 12 cases. J Am Soc Cytopathol .2021 Mar-Apr;10(2):187-96.
Key words: anemia, carcinoma, cytopathology, fine needle aspiration, kidney neoplasms, pleural fluid
https://www.sciencedirect.com/science/article/pii/S2213294520300971?via%3Dihub
PMID: 32651128

10. Mostafa HH, Carroll KC, Hicken R, Berry GJ, Manji R, Smith E, Rakeman JL, Fowler RC, Leelawong M, Butler-Wu SM, Quintero D, Umali-Wilcox M, Kwiatkowski RW, Persing DH, Weir F, Loeffelholz MJ. Multi-center evaluation of the Cepheid Xpert® Xpress SARS-CoV-2/Flu/RSV test. J Clin Microbiol. 2021 March;59(3): e02955-20
Key words: 4-plex, Cepheid, RSV; SARS-CoV-2, flu, influenza
https://jcm.asm.org/content/59/3/e02955-20.long
PMID: 33298613

11. Palumbo PJ, Zhang Y, Clarke W, Breaud A, Sivay M, Cummings V, Hamilton EL, Guo X, Ogendo A, Kayange N, Panchia R, Dominguez K, Chen YQ, Sandfort TGM, Eshleman SH. Uptake of antiretroviral treatment and viral suppression among men who have sex with men and transgender women in sub-Saharan Africa in an observational cohort study: HPTN 075. Int J Infect Dis. 2021 Mar; 104:465-70.
Key words: Antiretroviral drugs, HIV drug resistance, Men who have sex with men, Sub-Saharan Africa, Transgender women
https://www.clinicalkey.com/#!/content/playContent/1-s2.0-
S1201971221000102?returnurl=https:%2F%2Flinkinghub.elsevier.com%
2Fretrieve%2Fpii%2FS1201971221000102%3Fshowall%3Dtrue&referrer=
https:%2F%2Fpubmed.ncbi.nlm.nih.gov%2F33440260%2F
PMID: 33440260

12. Rooper LM. Emerging entities in salivary pathology: a practical review of sclerosing microcystic adenocarcinoma, microsecretory adenocarcinoma, and secretory myoepithelial carcinoma. Surg Pathol Clin 2021 Mar;14(1):137-50.
Key words: salivary gland carcinomas, sclerosing microcystic adenocarcinoma, microsecretory adenocarcinoma, secretory myoepithelial carcinoma, immunohistochemistry
https://www.sciencedirect.com/science/article/pii/S1875918120300763?via%3Dihub
PMID: 33526218

13. Rooper LM, Thompson LDR, Gagan J, Oliai BR, Weinreb I, Bishop JA. Salivary Intraductal carcinoma arising within intraparotid lymph node: a report of 4 cases with identification of a novel STRN-ALK fusion. Head Neck Pathol 2021 Mar;15(1):179-85.
Key words: intraductal carcinoma, intranodal tumors, NCOA4-RET, STRN-ALK, salivary gland neoplasms
https://link.springer.com/article/10.1007/s12105-020-01198-0
PMID: 32661669

14. Zaepfel BL, Zhang Z, Maulding K, Coyne AN, Cheng W, Hayes LR, Lloyd TE, Sun S, Rothstein JD. UPF1 reduces C9orf72 HRE-induced neurotoxicity in the absence of nonsense-mediated decay dysfunction. Cell Rep. 2021 Mar 30;34(13):108925.
Key words: ALS, FTD, neurodegeneration, C9ORF72, UPF1

https://www.sciencedirect.com/science/article/pii/S2211124721002394?via%3Dihub
PMID: 33789100

15. Zyskind I, Rosenberg AZ, Zimmerman J, Naiditch H, Glatt AE, Pinter A, Theel ES, Joyner MJ, Hill DA, Lieberman MR, Bigajer E, Stok D, Frank E, Silverberg JI. SARS-CoV-2 Seroprevalence and symptom onset in culturally linked Orthodox Jewish communities across multiple regions in the United States. JAMA Netw Open. 2021 Mar;4(3):e212816.
Key words: COVID-19, seroprevalence, orthodox Jewish communities
https://jamanetwork.com/journals/jamanetworkopen/fullarticle/2777318
PMID: 33688968

1. Blagg LN, Hruban RH, Gehrie EA. A department-sponsored, hospital-based pathology education symposium is a cost-effective method to provide laboratory staff with highly rated continuing education experiences. Arch Pathol Lab Med. 2021 Feb 1;145(2):231-9.
Key words: education, laboratories, pathology symposium

https://meridian.allenpress.com/aplm/article/145/2/231/
442286/A-Department-Sponsored-Hospital-Based-Pathology
PMID: 33501496

2. Bonny TS, Patel EU, Xianming Z, Bloch EM, Grabowski MK, Abraham AG, Littlefield K, Shrestha R, Benner SE, Laeyendecker O, Shoham S, Sullivan D, Quinn TC, Casadevall A, Pekosz A, Redd AD, Tobian AAR. Cytokine and chemokine levels in COVID-19 convalescent plasma. Open Forum Infect Dis. 2021 Feb;8(2):ofaa574.
Key words: cytokine, convalescent plasma, COVID-19, neutralizing antibodies, SARS-CoV-2
https://academic.oup.com/ofid/article/8/2/ofaa574/6006771
PMID: 33553467

3. Casadevall A, Tobian AAR. Convalescent plasma for COVID-19 - encouraging signals of efficacy (commentary). Br J Haematol. 2021 Feb;192(4):681-2.
Key words: COVID-19, SARS-Cov-2, antibody, convalescent plasma

https://onlinelibrary.wiley.com/doi/10.1111/bjh.17270
PMID: 33524158

4. Craven KE, Gökmen-Polar Y, Badve SS. CIBERSORT analysis of TCGA and METABRIC identifies subgroups with better outcomes in triple negative breast cancer. Sci Rep 2021 Feb;11(1):4691.
Key words: triple negative breast cancer, tumor infiltrating lymphocytes, CD8 T cells, CD4 memory activated T cells, gamma delta T cells
https://pubmed.ncbi.nlm.nih.gov/?term=Craven%20KE%
5BAuthor%5D&cauthor=true&cauthor_uid=33633150
PMID: 33633150

5. Grosser D, Matoso A, Epstein JI. Clear cell adenocarcinoma in men: a series of 15 cases. Am J Surg Pathol. 2021 Feb;45(2):270-6.
Key words: bladder neoplasm, clear cell adenocarcinoma, bladder adenocarcinoma, urethra cancer

https://pubmed.ncbi.nlm.nih.gov/32960833/

6. Jarrett J, Uhteg K, Forman MS, Hanlon A, Vargas C, Carroll KC, Valsamakis A, Mostafa HH. Clinical performance of the GenMark Dx ePlex respiratory pathogen panels for upper and lower respiratory tract infections. J Clin Virol 2021 Feb;135:104737.
Key words: GenMark, ePlex, panels, SARS-CoV-2

https://www.sciencedirect.com/science/article/pii/
S1386653221000044?via%3Dihub
PMID: 33497932

7. Lombardo KA, Murati Amador B, Parimi V, Hoffman-Censits J, Choi W, Hahn NM, Kates M, Bivalacqua TJ, McConkey D, Hoque MO, Matoso A. Urothelial carcinoma in situ of the bladder: correlation of CK20 expression with adaptive immune resistance, response to BCG therapy, and clinical outcome. Appl Immunohistochem Mol Morphol 2021 Feb 1;29(2):127-35.
Key words: urothelial carcinoma in situ, BCG, immune microenvironment, PDL1

https://journals.lww.com/appliedimmunohist/Fulltext/2021/02000/
Urothelial_Carcinoma_In_Situ_of_the_Bladder_.8.aspx
PMID: 32858539

8. Martin LJ, Niedzwiecki MV, Wong M. Chronic intermittent mild whole-body hypothermia is therapeutic in a mouse model of ALS. Cells. 2021 Feb;10(2):320.
Key words: motor neuron, mitochondrial permeability transition pore, cyclophilin D, adenine nucleotide translocase, therapeutic hypothermia
https://www.mdpi.com/2073-4409/10/2/320
PMID: 33557211

9. Neuman NM, Haffner MC, Argani P, Kao CS, Epstein JI. Histopathologic characterization of bladder perivascular epithelioid cell neoplasms (PEComa): A series of 11 cases with a subset having TFE3 rearrangements. Am J Surg Pathol. 2021 Feb;45:169-77.
https://journals.lww.com/ajsp/Fulltext/2021/02000/
Histopathologic_Characterization_of_Bladder.3.aspx

Key words: PECOMA, TFE3, bladder neoplasm
https://pubmed.ncbi.nlm.nih.gov/33002920/

10. Nix JS, Yuan M, Imada EL, Ames H, Marchionni L, Gutmann DH, Rodriguez FJ. Global microRNA profiling identified miR-10b-5p as a regulator of neurofibromatosis 1 (NF1)-glioma migration. Neuropathol Appl Neurobiol 2021 Feb;47(1):96-107.
Key words: NF1, glioma, miR-10b, microRNA, neurofibromatosis

https://onlinelibrary.wiley.com/doi/10.1111/nan.12641
PMID: 32603552

11. Wangsiricharoen S, Maleki Z. Risk stratification and clinical outcome in the atypia of undetermined significance category in the Milan System for Reporting Salivary Gland Cytopathology. Cancer Cytopathol. 2021 Feb;129(2):132-9.
Key words: atypia of undetermined significance (AUS), fine-needle aspiration (FNA), mucin, risk of malignancy (ROM), salivary gland
https://acsjournals.onlinelibrary.wiley.com/doi/10.1002/cncy.22352
PMID: 32936993

1. Allison DB, Smith AP, An D, Miller JA, Shafique K, Song S, Viswnaathan K, Eykman E, Rao RA, WilesA, Barkan GA, Nayar R, Fadda G, Powers CN, Rossi ED, Siddiqui MT, Ali SZ, Kholova I, Layfield LJ, Field A, Baloch Z, Maleki Z. Assessing the diagnostic accuracy for pleomorphic adenoma and warthin tumor by employing the Milan System for Reporting Salivary Gland Cytopathology: An international, multi-institutional study. Cancer Cytopathol. 2021 Jan;129(1):43-52.
Key words: cytopathology, Milan System for Reporting Salivary Gland Cytopathology, pleomorphic adenoma, fine needle aspiration (FNA)

https://acsjournals.onlinelibrary.wiley.com/doi/epdf/10.1002/cncy.22339
PMID: 32767837

2. Conklin SE, Martin K, Manabe YC, Schmidt HA, Miller J, Keruly M, Klock E, Kirby CS, Baker OR, Fernandez RE, Eby YJ, Hardick J, Shaw-Saliba K, Rothman RE, Caturegli PP, Redd AD, Tobian AAR, Bloch EM, Larman HB, Quinn TC, Clarke W*, Laeyendecker O*. Evaluation of saerological SARS-CoV-2 lateral flow assays for rapid point of care testing. J Clin Microbiol 2021 Jan 21;59(2):e02020-20. (equal contribution).
Key words: SARS-CoV-2 serology, point of care test, performance, cross-reactivity

https://jcm.asm.org/content/early/2020/11/13/JCM.02020-20
PMID: 33208477

3. Fomchenko KM, Walsh EM, Yang X, Verma RX, Lin BL, Nieuwenhuis TO, Patil AH, Fox-Talbot K, McCall MN, Kass DA, Rosenberg AZ, Halushka MK. Spatial proteomic approach to characterize skeletal muscle myofibers. J Proteome Res. 2021 Jan 1;20(1):888-94.
Key words: Human Protein Atlas, proteomics, skeletal muscle, twitch
https://pubs.acs.org/doi/10.1021/acs.jproteome.0c00673
PMID: 33251806

4. Halushka MK, Vander Heide RS. Myocarditis is rare in COVID-19 autopsies: cardiovascular findings across 277 postmortem examinations. Cardiovascular Pathol. Jan-Feb 2021;50:107300
Key words: COVID-19, SARS-CoV-2, autopsy, myocarditis, heart

https://www.sciencedirect.com/science/article/pii/S1054880720301046
PMID: 33132119

5. Hutchings D, Windon A, Assarzadegan N, Salimian KJ, Voltaggio L, Montgomery EA. Perianal Paget's disease as spread from non-invasive colorectal adenomas. Histopathology. 2021 Jan;78(2):276-80.
Key words: adenoma, extramammary Paget's disease, perianal Paget's disease

https://onlinelibrary.wiley.com/doi/10.1111/his.14218
PMID: 32705713

6. Isser A, Livingston NK, Schneck JP. Biomaterials to enhance antigen-specific T cell expansion for cancer immunotherapy. Biomaterials. 2021 Jan;268:120584.
Key words: artificial antigen-presenting cells, immunoengineering, cancer immunotherapy, particles, T cell
https://www.sciencedirect.com/science/article/pii/S0142961220308309?via%3Dihub
PMID: 33338931

7. Kaur HB, Salles DC, Paulk A, Epstein JI, Eshleman JR, Lotan TL. PIN-like ductal carcinoma of the prostate has frequent activating RAS/RAF mutations. Histopathology. 2021 Jan;78(2):327-33.
Key words: prostate, PIN?like ductal carcinoma, RAS, RAF, next-generation sequencing

https://onlinelibrary.wiley.com/doi/10.1111/his.14224
PMID: 32740981

8. Kim BW, Martin LJ. Mending the broken in amyotrophic lateral sclerosis: DNA damage and repair in motor neuron degeneration. Neural Regen Res. 2021 Jan;16(1):104-5.
Key words: ALS, motor neurons, DNA damage, cell modeling
https://www.nrronline.org/temp/NeuralRegenRes161104-6049221_164812.pdf
PMID: 32788455

9. Lee JK, Santos PT, Chen MW, O'Brien CE, Kulikowicz E, Adams S, Hardart H, Koehler RC, Martin LJ. Combining Hypothermia and Oleuropein Subacutely Protects Subcortical White Matter in a Swine Model of Neonatal Hypoxic-Ischemic Encephalopathy. J Neuropathol Exp Neurol. 2021 Jan;80(2):182-98.
Key words: BIN1, cardiac arrest, hypothermia, hypoxia, myelin basic protein

https://academic.oup.com/jnen/article/80/2/182/5992385
PMID: 33212486

10. Monaco DR, Sie BM, Nirschl TR, Knight AC, Sampson HA, Nowak-Wegrzyn A, Wood RA, Hamilton RG, Frischmeyer-Guerrerio PA, Larman HB. Profiling serum antibodies with a pan allergen phage library identifies key wheat allergy epitopes. Nat Commun. 2021 Jan;12(1):379.
Key words: antibodies, mucosal immunology, software, translational research

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7822912/
PMID: 33483508

11. Munson E, Carroll KC. Summary of novel bacterial isolates derived from human clinical specimens and nomenclature revisions published in 2018 and 2019. J Clin Microbiol. 2021 Jan;59(2):e01309-20.
Key words: nomenclature, prokaryotes, taxonomy

https://jcm.asm.org/content/59/2/e01309-20.long
PMID: 32967902

12. Patel EU, Bloch EM, Clarke W, Hsieh YH, Boon D, Eby Y, Fernandez RE, Baker OR, Keruly M, Kirby CS, Klock E, Littlefield K, Miller J, Schmidt HA, Sullivan P, Piwowar-Manning E, Shrestha R, Redd AD, Rothman RE, Sullivan D, Shoham S, Casadevall A, Quinn TC, Pekosz A, Tobian AAR*, Laeyendecker O*. Comparative performance of five commercially available serologic assays to detect antibodies to SARS-CoV-2 and identify individuals with high neutralizing titers. J Clin Microbiol. 2021 Jan;59(2):e02257-20.
Key words: COVID-19, SARS-CoV-2, serologic assays, neutralizing titers, convalescent plasma
https://jcm.asm.org/content/59/2/e02257-20.long
PMID: 33139419

13. Zhang Y, Wymant C, Laeyendecker O, Grabowski MK, Hall M, Hudelson S, Piwowar-Manning E, McCauley M, Gamble T, Hosseinipour MC, Kumarasamy N, Hakim JG, Kumwenda J, Mills LA, Santos BR, Grinsztejn B, Pilotto JH, Chariyalertsak S, Makhema J, Chen YQ, Cohen MS, Fraser C, Eshleman SH. Evaluation of phylogenetic methods for inferring the direction of Human Immunodeficiency Virus (HIV) transmission: HIV Prevention Trials Network (HPTN) 052. Clin Infect Dis. 2021 Jan;72(1):30-37.
Key words: HIV, direction of transmission, phylogenetic analysis, next-generation sequencing, HPTN 052
https://academic.oup.com/cid/article/72/1/30/5699877
PMID: 31922537

1. Chowsilpa S, An D, Maleki Z. Adenoid cystic carcinoma cytology: Salivary gland and nonsalivary gland. Diagn Cytopathol. 2020 Dec;48(12):1282-9.
Key words: adenoid cystic carcinoma, basaloid neoplasm, fine needle aspiration, nonsalivary gland adenoid cystic carcinoma, the Milan system for reporting salivary gland cytopathology
https://onlinelibrary.wiley.com/doi/10.1002/dc.24573
PMID: 32809258

2. Fogel JM, Bonsall D, Cummings V, Bowden R, Golubchik T, de Cesare M, Wilson EA, Gamble T, Del Rio C, Batey DS, Mayer KH, Farley JE, Hughes JP, Remien RH, Beyrer C, Fraser C, Eshleman SH. Performance of a high-throughput next-generation sequencing method for analysis of HIV drug resistance and viral load. J Antimicrob Chemother. 2020 Dec 1;75(12):3510-6.
Key words: HIV, drug resistance, sequencing, viral load

https://academic.oup.com/jac/article/75/12/3510/5890039
PMID: 32772080

3. Li YD, Chi WY, Su JH, Ferrall L, Hung CF, Wu TC. Coronavirus vaccine development: from SARS and MERS to COVID-19. J Biomed Sci. 2020 Dec 20;27(1):104
Key words: SARS-CoV-2, coronaviruses, vaccine, vaccine development

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7749790/
PMID: 33341119

4. Liu B, Totten M, Nematollahi S, Datta K, Memon W, Marimuthu S, Wolf LA, Carroll KC, Zhang SX. Development and evaluation of a fully automated molecular assay targeting the mitochondrial small subunit rRNA gene for the detection of Pneumocystis jirovecii in bronchoalveolar lavage fluid specimens. J Mol Diagn 2020 Dec;22(12):1482-93.
Key words: molecular assay, mitochondria, Pneumocystis jirovecoo, bronchoalveolar lavage
https://www.sciencedirect.com/science/article/pii/S1525157820304888?via%3Dihub
PMID: 33069878

5. Morris CP, Bergman Y, Tekle T, Fissel JA, Tamma PD, Simner PJ. Cefiderocol Antimicrobial susceptibility testing against multidrug-resistant Gram-negative bacilli: a comparison of disk diffusion to broth microdilution. J Clin Microbiol. 2020 Dec 17;59(1):e01649-20.
Key words: Cefiderocol, antimicrobial susceptibility testing, broth microdilution, disk diffusion
https://jcm.asm.org/content/59/1/e01649-20.long
PMID: 32938734

6. Negri S, Wang Y, Sono T, Lee S, Hsu GC, Xu J, Meyers CA, Qin Q, Broderick K, Witwer KW, Peault B, James AW. Human perivascular stem cells prevent bone graft resorption in osteoporotic contexts by inhibiting osteoclast formation. Stem Cells Transl Med. 2020 Dec;9(12):1617-30.
Key words: adipose stem cell, bone graft, mesenchymal stem cell, osteoclast, pericyte

https://stemcellsjournals.onlinelibrary.wiley.com/doi/10.1002/sctm.20-0152
PMID: 32697440

7. Sadegh-Nasseri S. How a proposed hypothesis during My PhD training shaped my career. Critical Reviews in Immunol. 2020;40(5):449-64.
Key words: Sercarz, career in science, laboratory training, immunology

http://www.dl.begellhouse.com/download/article/5f075f666372d12d/CRI-35324.pdf
No PMID available

8. Shore N, Kaplan SA, Tutrone R, Levin R, Bailen J, Hay A, Kalota S, Bidair M, Freedman S, Goldberg K, Snoy F, Epstein JI. Prospective evaluation of fexapotide triflutate injection treatment of Grade Group 1 prostate cancer: 4-year results. World J Urol. 2020 Dec;38(12):3101-11.
Key words: prostate cancer, fexapotide triflutate, urology, focal therapy, treatment
https://link.springer.com/article/10.1007/s00345-020-03127-w
PMID: 32088746

9. Simner PJ, Patel R. Cefiderocol antimicrobial susceptibility testing considerations: the Achilles heel of the Trojan Horse? Review article. J Clin Microbiol. 2020 Dec 17;59(1):e00951-20.
Key words: Cefiderocol, clinical laboratories, aerobic Gram-negative bacilli

https://jcm.asm.org/content/59/1/e00951-20.long
PMID: 32727829

10. Thompson ED, Roberts NJ, Wood LD, Eshleman JR, Goggins MG, Kern SE, Klein AP, Hruban RH. The genetics of ductal adenocarcinoma of the pancreas in the year 2020: dramatic progress, but far to go. Mod Pathol. 2020 Dec;33(12):2544-63.
Key words: genetics, pancreatic cancer, The Cancer Genome Atlas, germline variants
https://www.nature.com/articles/s41379-020-0629-6
PMID: 32704031

11. Uhteg K, Carroll KC, Mostafa HH. Coronavirus detection in the clinical microbiology laboratory: are we ready for identifying and diagnosing a novel virus? Clin Lab Med. 2020 Dec;40(4):459-72.
Key words: coronaviruses, SARS, MERS, COVID-19, SARS-CoV-2 (2019-nCoV), sequencing, molecular diagnosis
https://www.sciencedirect.com/science/article/pii/S0272271220300585?via%3Dihub
PMID: 33121615

12. Zhou Y, Lih TM, Pan J, Höti N, Dong M, Cao L, Hu Y, Cho KC, Chen SY, Eguez RV, Gabrielson E, Chan DW, Zhang H, Li QK. Proteomic signatures of 16 major types of human cancer reveal universal and cancer-type-specific proteins for the identification of potential therapeutic targets. J Hematol Oncol. 2020 Dec 7;13(1):170.
Key words: Proteomic analysis, data-independent acquisition, tissue-enriched proteins, cancer-associated proteins
https://jhoonline.biomedcentral.com/track/pdf/10.1186/s13045-020-01013-x.pdf
PMID: 33287876

1. Amin A, Murati-Amador B, Lombardo KA, Jackson CL, Grada Z, Palsgrove DN, Matoso A. Analysis of intestinal metaplasia without dysplasia in the urinary bladder reveal only rare mutations associated with colorectal adenocarcinoma. Appl Immunohistochem Mol Morphol. 2020 Nov/Dec;28(10):786-90.
Key words: intestinal metaplasia, bladder cancer, adenocarcinoma
https://journals.lww.com/appliedimmunohist/Fulltext/2020/
11000/Analysis_of_Intestinal_Metaplasia_Without.10.aspx
PMID: 31876604

2. Argani P, Harvey I, Nielsen GP, Takano A, Suurmeijer AJH, Voltaggio L, Zhang L, Sung YS, Stenzinger A, Mechtersheimer G, Dicksoni BC, Antonescu CR. EWSR1/FUS-CREB fusions define a distinctive malignant epithelioid neoplasm with predilection for mesothelial-lined cavities. Mod Pathol. 2020 Nov;33(11):2233-43.
Key words: transocation, pediatric, mesothelioma, CREB, EWS

https://www.nature.com/articles/s41379-020-0646-5
PMID: 32770123

3. Benner SE, Patel EU, Laeyendecker O, Pekosz A, Littlefield K, Eby Y, Fernandez RE, Miller J, Kirby CS, Keruly M, Klock E, Baker OR, Schmidt HA, Shrestha R, Burgess I, Bonny TS, Clarke W, Caturegli P, Sullivan D, Shoham S, Quinn TC, Bloch EM, Casadevall A, Tobian AAR, Redd AD. SARS-CoV-2 Antibody Avidity Responses in COVID-19 Patients and Convalescent Plasma Donors. J Infect Dis. 2020 Nov;222(12):1974-84.
Key words: SARS-CoV-2, avidity, anti-spike, anti-nucleocapsid, convalescent plasma

https://academic.oup.com/jid/article/222/12/1974/5903688
PMID: 32910175

4. Blackford AL, Canto MI, Klein AP, Hruban RH, Goggins M. Recent trends in the incidence and survival of stage 1A pancreatic cancer: a surveillance, epidemiology, and end results analysis. J Natl Cancer Inst. 2020 Nov 1;112(11):1162-9.
Key words: memory T cell, gene, CD4 T cell, memory cell markers, cell longevity

https://academic.oup.com/jnci/article/112/11/1162/5709818
PMID: 31958122

5. Daneshpajouhnejad P, Miller JA, Maleki Z. Diagnostic utility of high-risk human papillomavirus mRNA in situ hybridisation in squamous cell carcinoma of unknown primary in the head and neck and implementing American Society of Clinical Oncology guideline recommendations. Cytopathology. 2020 Nov;31(6):547-54.
Key words: American Society of Clinical Oncology guideline, fine needle aspiration, head and neck, humanpaillomavirus, RNA in situ hybridisation
https://onlinelibrary.wiley.com/doi/10.1111/cyt.12896
PMID: 32735747

6. Huang B, Trujillo MA, Fujikura K, Qiu M, Chen F, Felsenstein M, Zhou C, Skaro M, Gauthier C, Macgregor-Das A, Hutchings D, Hong SM, Hruban RH, Eshleman JR, Thompson ED, Klein AP, Goggins M, Wood LD, Roberts NJ. Molecular characterization of organoids derived from pancreatic intraductal papillary mucinous neoplasms. J Pathol. 2020 Nov;252(3):252-62.
Key words: intraductal papillary mucinous neoplasm, pancreas, precursor, organoids, RNA

https://onlinelibrary.wiley.com/doi/10.1002/path.5515
PMID: 32696980

7. Klein SL, Pekosz A, Park HS, Ursin RL, Shapiro JR, Benner SE, Littlefield K, Kumar S, Naik HM, Betenbaugh MJ, Shrestha R, Wu AA, Hughes RM, Burgess I, Caturegli P, Laeyendecker O, Quinn TC, Sullivan D, Shoham S, Redd AD, Bloch EM, Casadevall A, Tobian AA. Sex, age, and hospitalization drive antibody responses in a COVID-19 convalescent plasma donor population. J Clin Invest. 2020 Nov;130(11):6141-50.
Key words: SARS-CoV-2, COVID-19, immunoglobulins, IgG titers
https://www.jci.org/articles/view/142004
PMID: 32764200

8. Miller D, Morris CP, Maleki Z, White M, Rodriguez EF. Health disparities in cervical cancer: Prevalence of high-risk HPV and cytologic diagnoses according to race. Cancer Cytopathol. 2020 Nov;128(11):860-9.
Key words: early detection of cancer, health inequities, human papillomavirus infections, cervical cancer
https://acsjournals.onlinelibrary.wiley.com/doi/epdf/10.1002/cncy.22316
PMID: 32598100

9. Miller DL, Roy-Chowdhuri S, Illei P, James A, Hruban RH, Ali SZ. Primary pancreatic Ewing sarcoma: a cytomorphologic and histopathologic study of 13 cases. J Am Soc Cytopathol. 2020 Nov-Dec;9(6):502-12.
Key words: fine-needle aspiration, cytopathology, pancreatic neoplasms, ewing, EWSR 1 protein
https://www.sciencedirect.com/science/article/pii/S2213294520300806?via%3Dihub
PMID: 32536453

10. Mustafa S, Hruban RH, Ali SZ. Acinar cell carcinoma of the pancreas: a clinicopathologic and cytomorphologic review. J Am Soc Cytopathol. 2020 Nov-Dec;9(6):586-95.
Key words: acinar cell carcinoma, pancreas, fine-needle aspiration, cytomorphology, immunohistochemical stains

https://www.sciencedirect.com/science/article/pii/
S2213294520300673?via%3Dihub

PMID: 32461075

11. Priemer D, Gravenmier C, Batouli A, Hooper JE. Overview of pathologic findings of vaping in the context of an autopsy patient with chronic injury. Arch Pathol Lab Med. 2020 Nov;144(11):1408-13.
Key words: lung injury, vaping, tetrahydrocannabinol, public health, autopsy findings

https://meridian.allenpress.com/aplm/article/144/11/1408/
442270/Overview-of-Pathologic-Findings-of-Vaping-in-the
PMID: 32383974

12. Sivay MV, Grabowski MK, Zhang Y, Palumbo PJ, Guo X, Piwowar-Manning E, Hamilton EL, Viet Ha T, Antonyak S, Imran D, Go V, Liulchuk M, Djauzi S, Hoffman I, Miller W, Eshleman SH. Phylogenetic analysis of human immunodeficiency virus from people who inject drugs in Indonesia, Ukraine, and Vietnam: HPTN 074. Clin Infect Dis. 2020 Nov;71(8):1836-46.
Key words: HIV, phylogenetics, PWID, Asia, Eastern Europe

https://academic.oup.com/cid/article/71/8/1836/5651189
PMID: 31794031

13. Song N, Sengupta S, Khoruzhenko S, Welsh RA, Kim A, Kumar MR, Sønder SU, Sidhom JW, Zhang H, Jie C, Siliciano RF, Sadegh-Nasseri S. Multiple genetic programs contribute to CD4 T cell memory differentiation and longevity by maintaining T cell quiescence. Cell Immunol. 2020 Nov; 357:104210.
Key words: CD4 T cell, cell longevity, gene, genetic programs, memory T cell

https://www.sciencedirect.com/science/article/pii/S0008874920303701?via%3Dihub
PMID: 32987276

14. Sono T, Hsu CY, Negri S, Miller S, Wang Y, Xu J, Meyers CA, Peault B, James AW. Platelet derived growth factor receptor-beta (Pdgfrb) lineage tracing highlights perivascular to myofibroblast transdifferentiation during post-traumatic osteoarthritis. J Orthop Res. 2020 Nov;38(11):2484-94.
Key words: DMM, PDGFR?, myofibroblast, pericyte, perivascular stem cell

https://onlinelibrary.wiley.com/doi/10.1002/jor.24648
PMID: 32134140

1. Caturegli G, Materi J, Howard BM, Caturegli P. Clinical validity of serum antibodies to SARS-CoV-2: A case-control study. Ann Intern Med. 2020 Oct 20;173(8):614-22.
Key words: COVID-19, serum antibody testing, IgG and IgA antibodies, NAAT
https://www.acpjournals.org/doi/pdf/10.7326/M20-2889
PMID: 32628534

2. Fujikura K, Hutchings D, Braxton AM, Zhu Q, Laheru DA, Hruban RH, Thompson ED, Wood LD. Intraductal pancreatic cancer is less responsive than cancer in the stroma to neoadjuvant chemotherapy. Mod Pathol. 2020 Oct;33(10):2026-34.
Key words: neoadjuvant chemotherapy, pancreatic cancer, PDAC cells

https://www.nature.com/articles/s41379-020-0572-6
PMID: 32457408

3. Hu Y, Pan P, Shah P, Ao M, Thomas SN, Liu Y,Chen L, Schnaubelt M, Clark DJ, Rodriguez H, Boja ES, Hiltke T, Kinsinger CR, Rodland KD, Li QK, Qian J, Zhang Z, Chan DW, Zhang H. Integrated proteomic and glycoproteomic characterization of human high-grade serous ovarian carcinoma. Clinical Proteomic Cell Rep. 2020 Oct;33(3):108276.
Key words: CPTAC, glycosylation, mass spectrometry, glycoproteomics, high-grade serous ovarian carcinoma
https://www.sciencedirect.com/science/article/pii/S2211124720312651?via%3Dihub
PMID: 33086064

4. Ippolito S, Piantanida E, Tanda ML, Caturegli P. Graves' disease insights from a review of the Johns Hopkins surgical pathology archive. J Endocrinol Invest. 2020 Oct;43(10):1519-22.
Key words: gender differences, Graves' disease, lymphocytic infiltration, papillary thyroid cancer, thyroidectomy, thyroiditis and cancer
https://link.springer.com/article/10.1007/s40618-020-01232-6

5. Lee JK, Liu D, Raven EP, Jiang D, Liu P, Qin Q, Kulikowicz E, Santos PT, Adams S, Zhang J, Koehler RC, Martin LJ, Tekes A. Mean diffusivity in striatum correlates with acute neuronal death but not lesser neuronal injury in a pilot study of neonatal piglets with encephalopathy. J Magn Reson Imaging. 2020 Oct;52(4):1216-16.
Key words: striatum, acute neuronal death, encephalopathy
https://onlinelibrary.wiley.com/doi/full/10.1002/jmri.27181
PMID: 33086064

6. Morris M, Driscoll M, Henson JW, Cobbs C, Jiang L, Gocke CD, Chen L, Rodriguez FJ. Low-grade gemistocytic morphology in H3 G34R-mutant gliomas and concurrent K27M mutation: clinicopathologic findings. J Neuropathol Exp Neurol. 2020 Oct 1;79(10):1038-43.
Key words: G34R, Gemistocytic, H3F3A, Histone H3, HIST1H3B, K27M, Low-grade glioma
https://academic.oup.com/jnen/article/79/10/1038/5909358
PMID: 32954438

7. Olczak P, Roden RBS. Progress in L2-based prophylactic vaccine development for protection against diverse human papillomavirus genotypes and associated diseases (review). Vaccines (Basel). 2020 Oct;8(4):E568
Key words: HPV, human papillomavirus, vaccine, cross-protection, neutralization
https://www.mdpi.com/2076-393X/8/4/568
PMID: 33019516

8. Patel EU, White JL, Gaydos CA, Quinn TC, Mehta SH, Tobian AAR. Marijuana use, sexual behaviors, and prevalent sexually transmitted infections among sexually experienced males and females in the United States: Findings From the National Health and Nutrition Examination Surveys. Sex Transm Dis. 2020 Oct;47(10):672-8.
Key words: STI's, marijuana use, public health, CDC
https://journals.lww.com/stdjournal/Fulltext/2020/10000/
Marijuana_Use,_Sexual_Behaviors,_and_Prevalent.5.aspx
PMID: 32936602

9. Rooper LM, Uddin N, Gagan J, Brosens LAA, Magliocca KR, Edgar MA, Thompson LDR, Agaimy A, Bishop JA. Recurrent loss of SMARCA4 in sinonasal teratocarcinosarcoma. Am J Surg Pathol. 2020 Oct;44(10):1331-9.
Key words: nasal neoplasms, nasal cancers, malignant teratocarcinosarcoma, SMARCA4, BR G1
https://journals.lww.com/ajsp/Fulltext/2020/10000/
Recurrent_Loss_of_SMARCA4_in_Sinonasal.4.aspx

PMID: 32520761

10. Sagara T, Debeljak M, Wright CM, Anders NM, Liang H, Rudek MA, Ostermeier M, Eshleman JR, Matsushita Y. Successful gene therapy requires targeting the vast majority of cancer cells. Cancer Biol Ther. 2020 Oct 2;21(10):946-53.
Key words: 5-FU, fluorouracil, patient-derived tumor xenograft, relapse, regression

https://www.tandfonline.com/doi/epub/10.1080/15384047.
2020.1809912?needAccess=true

PMID: 32997949

11. Shen YA, Hong J, Asaka R, Asaka S, Hsu FC, Suryo Rahmanto Y, Jung JG, Chen YW, Yen TT, Tomaszewski A, Zhang C, Attarwala N, DeMarzo AM, Davidson B, Chuang CM, Chen X, Gaillard S, Le A, Shih IM, Wang TL. Inhibition of the MYC-regulated glutaminase metabolic axis is an effective synthetic lethal approach for treating chemoresistant ovarian cancers. Cancer Res. 2020 Oct;80(20):4514-26.
Key words: MYC oncogene, ovarian cancer, glutaminase, GLS inhibitors

https://cancerres.aacrjournals.org/content/80/20/4514.long
PMID: 32859605

12. White MJ, Wyse RJ, Ware AD, Deville C, Jr. Current and historical trends in diversity by race, ethnicity, and sex within the US pathology physician workforce. Am J Clin Pathol. Oct 2020;154(4):450-8.
Key words: Diversity, gender, workforce, pathology, underrepresented in medicine
https://academic.oup.com/ajcp/article/154/4/450/5891778
PMID: 32785661

13. Xu J, Wang Y, Hsu CY, Negri S, Tower RJ, Gao Y, Tian Y, Sono T, Meyers CA, Hardy WR, Chang L, Hu S, Kahn N, Broderick K, Péault B, James AW. Lysosomal protein surface expression discriminates fat- from bone-forming human mesenchymal precursor cells. Elife. 2020 Oct 12;9:e58990.
Key words: bone, fat, perivascular stem cells, exocytosis, LAMP1, CD107a

https://elifesciences.org/articles/58990
PMID: 33044169

1..Bloch EM, Gehrie EA, Ness PM, Sugarman J, Tobian AAR. Blood transfusion safety in low resources countries: aspiring to a higher standard. Annals of Internal Medicine. 2020 Sept;173:482-3.
Key words: health care quality assessment, blood transfusion, blood banks, nucleic acids, pathogens
https://www.acpjournals.org/doi/pdf/10.7326/M20-0203
PMID: 32539444

2. Bonny TS, Kirby C, Martens C, Rose R, Desai N, Seisa M, Petropoulos C, Florman S, Brown D, Segev D, Durand CM, Tobian AAR, Redd AD. Outcome of donor-derived superinfection screening in HIV-positive to HIV-positive kidney and liver transplantation: a multicenter, prospective, observational study. Lancet HIV. 2020 Sept;7(9):e611-e619.
Key words: HIV superinfection, kidney, liver
https://www.clinicalkey.com/#!/content/journal/1-s2.0-S2352301820302009
PMID: 32730756

3. Chan D, Doughty RN, Lund M, Lee M, Kerr AJ. Target doses of secondary prevention medications are not being achieved in patients with reduced left ventricular ejection fraction after acute coronary syndrome (ANZACS-QI 34). Heart, Lung and Circ. 2020 Sept;29(9):1386-96.
Key words: left ventricular ejection fraction, acute coronary syndrome
https://www.sciencedirect.com/science/article/pii/
S144395062030113X?via%3Dihub
PMID: 32423781

4. Epstein DJ, Thompson LDR, Saleem A, Kao CS, Epstein JI. Fungal prostatitis due to endemic mycoses and Cryptococcus: A multicenter case series. Prostate. 2020 Sep;80(12):1006-11.
Key words: fungal infections, prostatitis, cryptococcus

https://onlinelibrary.wiley.com/doi/full/10.1002/pros.24034
PMID: 32572997

5. Hickey JW, Isser A, Salathe SF, Gee KM, Hsiao MH, Shaikh W, Uzoukwu NC, Bieler JG, Mao HQ, Schneck JP. Adaptive nanoparticle platforms for high throughput expansion and detection of antigen-specific T cells. Nano Lett. 2020 Sep 9;20(9):6289-98.
Key words: antigen-specific T cells, detection, artificial antigen presenting cell, rare cell enrichment
https://pubs.acs.org/doi/10.1021/acs.nanolett.0c01511
PMID: 32594746

6. Kruse RL, Neally M, Cho BC, Bloch EM, Lokhandwala PM, Ness PM, Frank SM, Tobian AAR, Gehrie EA. Cryoprecipitate utilization patterns observed with a required prospective approval process vs electronic dosing guidance. Am J Clin Pathol. 2020 Aug 5;154(3):362-8.
https://academic.oup.com/ajcp/article/154/3/362/5843307
PMID: 32445461

7. Kwon R, Zhang ML, VandenBussche CJ. Considerations for remote learning in pathology during COVID-19 social distancing. Cancer Cytopathol. 2020 Sep;128(9):642-7.
Key words: COVID, social distancing, remote learning, education
https://acsjournals.onlinelibrary.wiley.com/doi/full/10.1002/cncy.22289
PMID: 32497399

8. Montagne JM, Zheng XA, Pinal-Fernandez I, Milisenda JC, Christopher-Stine L, Lloyd TE, Mammen AL, Larman HB. Ultra-efficient sequencing of T Cell receptor repertoires reveals shared responses in muscle from patients with Myositis. EBioMedicine. 2020 Sep;59:102972
Key words: TCR repertoire, myositis, idiopathic Inflammatory myopathy, autoimmunity
https://www.sciencedirect.com/science/article/pii/S2352396420303480?via%3Dihub
PMID: 32891935

9. Mostafa HH, Lamson DM, Uhteg K, Geahr M, Gluck L, Brazelton de Cárdenas JN, Morehead E, Forman M, Carroll KC, Hayden RT, St. George K. Multicenter evaluation of the NeuMoDx™ SARS-CoV-2 Test. J Clin Virol. 2020 Sep; 130: 104583.
Key words: COVID-19, SARS, test
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7413157/pdf/main.pdf

10. Nix JS, Rooper LM. Navigating small biopsies of salivary gland tumors: a pattern-based approach. J Am Soc Cytopathol. 2020 Sept-Oct;9(5):369-82.
Key words: biopsy, salivary gland, tumors
https://www.sciencedirect.com/science/article/pii/S2213294520301113?via%3Dihub
PMID: 32660844

11. Rodriguez EF, Jones R, Gabrielson M, Santos D, Pastorello RG, Maleki Z. Application of The International System for Reporting Serous Fluid Cytopathology (ISRSFC) on reporting pericardial effusion cytology. Acta Cytol. 2020 Sept-Oct;64(5):477-85.
https://www.karger.com/Article/FullText/507311
PMID: 32422631

12. Sono T, Hsu CY, Wang Y, Xu J, Cherief M, Marini S, Huber AK, Miller S, Péault B, Levi B, James AW. Perivascular Fibro-Adipogenic Progenitor Tracing during Post-Traumatic Osteoarthritis. Am J Pathol. 2020 Sep;190(9):1909-20.
Key words: Pericytes, perivascular stem cells, osteoarthritis, fibrosis

https://www.sciencedirect.com/science/article/pii/
S0002944020302881?via%3Dihub
PMID: 32533926

13. Tabibi S, Tabibi T, Conic RRZ, Banisaeed N, Streiff MB. therapeutic plasma exchange: a potential management strategy for critically ill COVID-19 patients. J Intensive Care Med. 2020 Sept;35(9):827-35.
Key words: plasma exchange, COVID-19, cytokine storm, ARDS, coagulopathy, DIC, endotheliopathy
https://journals.sagepub.com/doi/10.1177/0885066620940259
PMID: 32666875

14. Zhan H, Bhattacharya S, Cai H, Iglesias PA, Huang CH, Devreotes PN. An excitable Ras/PI3K/ERK signaling network controls migration and oncogenic transformation in epithelial cells. Dev Cell. 2020 Sep 14;54(5):608-623.e5.
Key words: excitability, wave, threshold, oncogenic transformation, Ras

https://www.sciencedirect.com/science/article/pii/
S1534580720305992?via%3Dihub

PMID: 32877650

15. Zhang Y, Byrnes K, Lam-Himlin D, Pittman M, Pezhouh M, Gonzalez RS, Alruwaii Z, Larman T, Miller JA, Matoso A, Oshima K, Epstein JI, Montgomery EA, Voltaggio L. Gastrointestinal malakoplakia: clinicopathologic analysis of 26 cases. Am J Surg Pathol. 2020 Sept;44(9):1251-8.
Key words: gastrointestinal malakoplakia, clinicopathology
https://journals.lww.com/ajsp/FullText/2020/09000/
Gastrointestinal_Malakoplakia__Clinicopathologic.11.aspx

PMID: 32301754

1. Conklin SE, Knezevic CE. Advancements in the gold standard: Measuring steroid sex hormones by mass spectrometry. Clin Biochem. 2020 Aug; 82:21-32.
Key words: steroid sex hormones, mass spectrometry, immunoassays

https://www.sciencedirect.com/science/article/pii/S0009912019314110?via%3Dihub
PMID: 32209333

2. Fissel JA, Yarbrough ML, Tekle T, Burnham CA, Simner PJ. Reporting considerations for cefepime-susceptible and -susceptible-dose dependent results for carbapenemase-producing enterobacterales. J Clin Microbiol. 2020 Aug;58(9):e01271-20.
Key words: cefepime, carbapenemase, enterobacterales
https://jcm.asm.org/content/58/9/e01271-20.long
PMID: 32641398

3. Heaphy CM, Bi WL, Coy S, Davis C, Gallia GL, Santagata S, Rodriguez FJ. Telomere length alterations and ATRX/DAXX loss in pituitary adenomas. Mod Pathol. 2020;33(8):1475-81.
Key words: telomeres, pituitary adenomas

https://www.nature.com/articles/s41379-020-0523-2
PMID: 32203094

4. Manohar M, Marzinke MA. Validation and implementation of an ultrasensitive liquid chromatographic-tandem mass spectrometric (LC-MS/MS) assay for dapivirine quantitation in breast milk. Clin Biochem. 2020 Aug;82:66-72.
Key words: antiretroviral, LC-MS/MS, breast milk, Dapivirine, HIV

https://www.sciencedirect.com/science/article/pii/S0009912019312160?via%3Dihub
PMID: 31843664

5. Rodriguez EF, Tseng LH, De Marchi F, Haung J, Belchis D, Xian R, Gocke CD, Eshleman JR, Illei PB, Lin MT. Clonal origin evaluated by trunk and branching drivers and prevalence of mutations in multiple lung tumor nodules. Mol Diagn Ther. 2020 Aug;24(4):461-72.
Key words: intrapulmonary metastasis, multiple primary lung cancers, trunk driver, branching driver, clonality
https://link.springer.com/article/10.1007/s40291-020-00471-w
PMID: 32504414

6. Salles DC, Mata DA, Epstein JI. Significance of paneth-cell-like differentiation in prostatic adenocarcinoma: A retrospective cohort study of 80 cases. Hum Pathol. 2020 Aug;102:7-12.
Key words: prostate adenocarcinoma, neuroendocrine, paneth
https://www.sciencedirect.com/science/article/pii/S0046817720300964?via%3Dihub
PMID: 32445653

7. Shabihkhani M, Patil P, Murati Amador B, Plaza JA, Osunkoya AO, Lombardo KA, Epstein JI, Matoso A. Extramammary paget disease of the scrotum: a contemporary clinicopathologic analysis of 20 cases in the United States. Appl Immunohistochem Mol Morphol. 2020 Aug;28(7):524-31.
Key words: Paget, scrotum, GATA3, PSA, GCDFP15

https://insights.ovid.com/crossref?an=00129039-900000000-98690
PMID: 31290785

8. Wang Y, Negri S, Li Z, Xu J, Hsu CY, Peault B, Broderick K, James AW. Anti-DKK1 enhances the early osteogenic differentiation of human adipose-derived stem/stromal cells. Stem Cells Dev. 2020 Aug;29(15):1007-15.
Key words: Bone, bone healing, bone repair, mesenchymal stem cells, Wnt signaling

https://www.liebertpub.com/doi/10.1089/scd.2020.0070?url_ver=Z39.88-2003&rfr_id=ori%3Arid%3Acrossref.org&rfr_dat=cr_pub++0pubmed&
PMID: 32460636

9. Yang W, Song A, Ao M, Xu Y, Zhang H. Large-scale site-specific mapping of the O-GalNAc glycoproteome. Nat Protoc. 2020 Aug;15(8):2589-610.
Key words: glycosylation, O-linked, site-specific, large-scale, glycoproteomics

https://www.nature.com/articles/s41596-020-0345-1
PMID: 32681153

10. Yoshizawa T, Hong SM, Jung D, Noe M, Kiemen A, Wu PH, Wirtz D, Hruban R, Wood LD, Oshima K. Three-dimensional analysis of extrahepatic cholangiocarcinoma and tumor budding. J Pathol. 2020 Aug;251(4):400-10.
Key words: bile duct, neoplasm, 3D imaging, confocal microscopy, tumor budding

https://onlinelibrary.wiley.com/doi/full/10.1002/path.5474
PMID: 32476131

1. Argani P, Reuter VE, Eble JN, Vlatkovic L, Yaskiv O, Swanson D, Dickson BC, Antonescu CR, Matoso A, Gagan J, Palsgrove DN. Biphasic Hyalinizing Psammomatous Renal Cell Carcinoma (BHP RCC): A Distinctive Neoplasm Associated With Somatic NF2 Mutations. Am J Surg Pathol. 2020 Jul;44(7):901-16.
Key words: kidney, neoplasm, renal cell carcinoma, somatic mutations, NF2 gene
https://journals.lww.com/ajsp/FullText/2020/07000/
Biphasic_Hyalinizing_Psammomatous_Renal_Cell.11.aspx
PMID: 32217839

2. Clark DJ, Zhang H. Proteomic approaches for characterizing renal cell carcinoma. Clin Proteomics. 2020 Jul;17:28.
Key words: Renal cell carcinoma, proteomics, tissue profiling, serum/plasma profiling, urine profiling
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7391522/

3. Eberhart CG, Bar EE. Spatial enrichment of cellular states in glioblastoma. Acta Neuropathol. 2020 Jul;140(1):85-87.
Key words: glioblastoma, cellular states, ANOVA, cellular plasticity
https://link.springer.com/article/10.1007/s00401-020-02165-3
PMID: 32449056

4. Gehrie EA, Frank SM, Goobie SM. Balancing supply and demand for blood during the COVID-19 pandemic. Editorial. Anesthesiology. 2020 Jul;133(1):16-8.
Key words: COVID-19; Blood Transfusion; Blood Shortage; Blood Banking

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7176270/

5. Huang W, Navarro-Serer B, Jeong YJ, Chianchiano P, Xia L, Luchini C, Veronese N, Dowiak C, Ng T, Trujillo MA, Huang B, Pflüger MJ, Macgregor-Das AM, Lionheart G, Jones D, Fujikura K, Nguyen-Ngoc KV, Neumann NM, Groot VP, Hasanain A, van Oosten AF, Fischer SE, Gallinger S, Singhi AD, Zureikat AH, Brand RE, Gaida MM, Heinrich S, Burkhart RA, He J, Wolfgang CL, Goggins MG, Thompson ED, Roberts NJ, Ewald AJ, Wood LD. Pattern of invasion in human pancreatic cancer organoids is associated with loss of SMAD4 and clinical outcome. Cancer Res. 2020 July;80(13):2804-17.
Key words: SMAD4, PDAC, TGF?, organoids
https://cancerres.aacrjournals.org/content/80/13/2804.short?rss=1
PMID: 32376602

6. Hsu GC, Marini S, Negri S, Wang Y, Xu J, Pagani C, Hwang C, Stepien D, Meyers CA, Miller S, McCarthy E, Lyons KM, Levi B, James AW. Endogenous CCN family member WISP1 inhibits trauma-induced heterotopic ossification. JCI Insight. 2020 Jul;5(13):e135432.
Key words: CCN4, heterotopic bone, osteogenesis

https://insight.jci.org/articles/view/135432
PMID: 32484792

7. Pujadas E, Chen L, Weingart JD, Orr B, Ozer BH, Holdhoff M, Rodriguez FJ. TSC2 alterations in anaplastic ependymoma progression to ependymosarcoma. Clin Neuropathol. 2020 Jul/Aug;39(4):179-87.
Key words: TSC2, anaplastic ependymoma, ependymosarcoma
https://pubmed.ncbi.nlm.nih.gov/32017698/

1. Bloch EM, Shoham S, Casadevall A, Sachais BS, Shaz B, Winters JL, van Buskirk C, Grossman BJ, Joyner M, Henderson JP, Pekosz A, Lau B, Wesolowski A, Katz L, Shan H, Auwaerter PG, Thomas D, Sullivan DJ, Paneth N, Gehrie E, Spitalnik S, Hod E, Pollack L, Nicholson WT, Pirofski LA, Bailey JA, Tobian AA. Deployment of convalescent plasma for the prevention and treatment of COVID-19. J Clin Invest. 2020 Jun;130(6):2757-65.
Key words: convalescent plasma, COVID 19, antibodies

https://www.jci.org/articles/view/138745
PMID: 32254064

2. Byrnes K, Khararjian A, Mannan AASR, Arnold M, Voltaggio L. Young-onset ischemic colitis: a condition of elusive etiology frequently associated with immune dysregulation. Int J Surg Pathol. 2020 Jun;28(4):361-6.
Key words: bloody diarrhea, ischemic colitis, ulcerative colitis, vasculitis, young onset
https://journals.sagepub.com/doi/full/10.1177/1066896919894671?url_ver=Z39.88-2003&rfr_id=ori:rid:crossref.org&rfr_dat=cr_pub%3dpubmed
PMID: 31870209

3. Eberhart CG, Rubens J. Editorial: SWI/SNF complex differences promote cellular heterogeneity in rhabdoid tumors. Neuro Oncol. 2020 Jun;22(6):741-2.
Key words: rhabdoid tumors, cellular heterogeneity
https://academic.oup.com/neuro-oncology/article/22/6/741/5813715

4. Macgregor-Das A, Yu J, Tamura K, Abe T, Suenaga M, Sindo K, Borges M, Koi C, Kohi S, Sadakari Y, Dal Molin M, Almario JA, Ford M, Chuidian M, Burkhart R, He J, Hruban RH, Eshleman JR, Goggins M. Detection of circulating tumor DNA in patients with pancreatic cancer using digital next-generation sequencing. J Mol Diagn. 2020 Jun;22(6):748-756.
Key words: Pancreatic cancer, KRAS, digital NGS
https://www.sciencedirect.com/science/article/pii/S1525157820300568?via%3Dihub
PMID: 32205290

5. Pezhouh MK, Burgart LJ, Chiu K, Cohen DA, Hutchings DA, Sanderson SO, Shirazi M, Stanich PP, VandenBussche CJ, Voltaggio L, Willhoit ED, Xue Y, Arnold CA. Characterization of novel injectable lifting agents used in colonic polyp removal: an emerging amyloid mimic. Am J Surg Pathol. 2020 Jun;44(6):793-8.
Key words: Orise, Eleview, injectable lifting agents, amyloid mimic, colon polyp

https://journals.lww.com/ajsp/FullText/2020/06000/C
haracterization_of_Novel_Injectable_Lifting.10.aspx
PMID: 31934919

6. Rodriguez EF, De Marchi F, Lokhandwala PM, Belchis D, Xian R, Gocke CD, Eshleman JR, Illei P, Li MT. IDH1 and IDH2 mutations in lung adenocarcinomas: Evidences of subclonal evolution. Cancer Med. 2020 Jun;9(12):4386-394.
Key words: IDH1, IDH2, cytosine deamination, lung cancers, parallel evolution

https://onlinelibrary.wiley.com/doi/full/10.1002/cam4.3058
PMID: 32333643

7. Wake L, VandenBussche CJ, Ali SZ, Wagner-Johnston ND, Burns KH, Gocke CD, Vuica-Ross M, Borowtiz MJ, Duffiled AS. Flow cytometric analysis of fine needle aspirates is affected by tumor subtype, but not by anatomic location nor technique. Diagn Cytogenetics. 2020 June;48(6):538-46.
Key words: FNA, fine needle aspirates, flow cytometry
https://onlinelibrary.wiley.com/doi/full/10.1002/dc.24417
PMID: 32212260

8. Wake LM, Ware AD. ? heavy chain disease presenting in a patient with systemic lupus erythematosus. Blood. 2020 Jun 4;135(23):2110.
Key words: heavy chain disease, systemic lupus erythematosus

https://ashpublications.org/blood/article/135/23/2110/458142/
heavy-chain-disease-presenting-in-a-patient-with

PMID: 32497227

9. Xian RR, Xie Y, Haley LM, Yonescu R, Pallavajjala A, Pittaluga S, Jaffe ES, Duffield AS, McCall CM, Gheith SMF, Gocke CD. CREBBP and STAT6 co-mutation and 16p13 and 1p36 loss define the t(14;18)-negative diffuse variant of follicular lymphoma. Blood Cancer J. 2020;10(6):69.
Key words: genomics, follicular lymphoma, molecular classification, CRBBP, STAT6 https://www.nature.com/articles/s41408-020-0335-0
PMID: 32555149

10. Yang W, Ao M, Song A, Xu Y, Sokoll L, Zhang H. Mass spectrometric mapping of glycoproteins modified by Tn-Antigen using solid-phase capture and enzymatic release. Anal Chem. 2020 June;92(13):9230-8.
Key words: Tn-antigen, glycoproteomics, site-specific, large-scale, pancreatic cancer

https://pubs.acs.org/doi/10.1021/acs.analchem.0c01564
PMID: 32510927

1. Abe T, Koi C, Kohi S, Song KB, Tamura K, Macgregor-Das A, Kitaoka N, Chuidian M, Ford M, Dbouk M, Borges M, He J, Burkhart R, Wolfgang CL, Klein AP, Eshleman JR, Hruban RH, Canto MI, Goggins M. Gene variants that affect levels of circulating tumor markers increase identification of patients with pancreatic cancer. Clin Gastroenterology and Hepatol. 2020 May;18(5):1161-1169.e5.
Key words: Diagnosis; Early Detection; Genotype; Screening

https://pubmed.ncbi.nlm.nih.gov/31676359/

2. Costigliolo F, Lombardo K, Arend L, Rosenberg AZ, Matoso A, Carter-Monroe N, Bagnasco SM. BK virus RNA in renal allograft biopsies. J Histochem Cytochem. 2020 May;68(5):319-25.
Key words: infection, nucleic acid, pathology, transplantation
https://journals.sagepub.com/doi/full/10.1369/0022155420922604?url_ver=Z39.88-2003&rfr_id=ori:rid:crossref.org&rfr_dat=cr_pub%3dpubmed
PMID: 32352851

3. Choi BR, Cave C, Na CH, Sockanathan S. GDE2-dependent activation of canonical Wnt signaling in neurons regulates oligodendrocyte maturation. Cell Rep. 2020 May;31(5):107540.
Key words: Gde2, Wnt signaling, myelination, oligodendrocyte maturation, phosphacan

https://www.sciencedirect.com/science/article/pii/
S221112472030440X?via%3Dihub

PMID: 32375055

4. Dholakia J, Chen W, O'Malley DM, Ronnett BM. A rare case of atypical placental site nodule with an emerging intermediate trophoblastic tumor. Int J Gynecol Pathol. 2020 May;39(3):238-46.
Key words: trophoblastic tumor, placental site nodule
https://insights.ovid.com/crossref?an=00004347-900000000-99112
PMID: 30829757

5. Eberhart C. Astrocytes - New stars in the medulloblastoma firmament. Neuro Oncol. 2020 May 15;22(5):587-9.
Key words: astrocytes, medulloblastoma

https://academic.oup.com/neuro-oncology/article/22/5/587/5802783
No PMID available

6. Kacker S, Katz LM, Ness PM, Bloch EM, Goel R, Gehrie EA, Lokhandwala PM, Tobian AAR. Financial analysis of large-volume delayed sampling to reduce bacterial contamination of platelets. Transfusion. 2020 May;60(5):997-1002.
Key words: large-volume delayed sampling (LVDS), pathogen reduction, point-of-release testing, secondary bacterial culture
https://onlinelibrary.wiley.com/doi/full/10.1111/trf.15773
PMID: 32275069

7. Maleki Z, Abram M, Dell'Aquila M, Kilic I, Lu R, Musarra T, Barkan G, Rajakorpi E, Rossi ED, Kholova I. Insulinoma-associated protein 1 (INSM-1) expression in medullary thyroid carcinoma FNA: a multi-institutional study. J Am Soc Cytopathol. 2020 May-June;9(3):185?90.
Key words: FNA (Fine-needle aspiration), INSM-1, immunohistochemistry, insulinoma-associated protein 1

https://www.sciencedirect.com/science/article/pii/S2213294520300326?via%3Dihub
PMID: 32197966

8. Meyers CA, Lee S, Sono T, Xu J, Negri S, Tian Y, Wang Y, Li Z, Miller S, Chang L, Gao Y, Minichiello L, Clemens TL, James AW. A neurotrophic mechanism directs sensory nerve transit in cranial bone. Cell Rep. 2020 May 26;31(8):107696.
Key words: Bone, bone repair, skeletal nerves, nerve growth factor, NGF, TrkA

https://www.sciencedirect.com/science/article/pii/S2211124720306495
PMID: 32460020

9. Morris CP, Chowsilpa S, Mustafa S, Chan I, Miller D, Maleki Z, Rodriguez EF. Impact of the current US Preventive Services Task Force recommendations for cervical cancer screening in young women 21 to 29 years old. Am J Clin Pathol. 2020 May;153(6):734?42.
Key words: Cervical cancer screening; HPV; HPV 16; HPV 18; High-grade intraepithelial lesion; Pap test; USPSTF
https://academic.oup.com/ajcp/article/153/6/734/5812988
PMID: 32221518

10. Murphy KJ, Conroy AL, Ddungu H, Shrestha R, Kyeyune-Byabazaire D, Petersen MR, Musisi E, Patel EU, Kasirye R, Bloch EM, Lubega I, John CC, Hume HA, Tobian AAR. Malaria parasitemia among blood donors in Uganda. Transfusion. 2020 May;60(5):955?64.
Key words: Cervical cancer screening, HPV, HPV 16, HPV 18, high-grade intraepithelial lesion
https://onlinelibrary.wiley.com/doi/full/10.1111/trf.15775
PMID: 32282944

11. Nakata S, Price A, Eberhart C, Morris M. Increased Tau expression correlates with IDH mutation in infiltrating gliomas and impairs cell migration. J Neuropathol Exp Neurol. 2020 May;79(5):493-9.
Key words: Astrocytoma; Glioma; IDH; MAPT; Prognosis; Tau

https://academic.oup.com/jnen/article/79/5/493/5809104
PMID: 32181806

12. Voltaggio L, McCluggage WG, Iding JS, Martin B, Longacre TA, Ronnett BM. A novel group of HPV-related adenocarcinomas of the lower anogenital tract (vagina, vulva, and anorectum) in women and men resembling HPV-related endocervical adenocarcinomas. Mod Pathol. 2020 May;33(5):944-52.
Key words: HPV, adenocarcinomas, anogenital tract

https://www.nature.com/articles/s41379-019-0437-z
PMID: 31857682

13. Xu J, Li D, Hsu CY, Tian Y, Zhang L, Wang Y, Tower RJ, Chang L, Meyers CA, Gao Y, Broderick K, Morris C, Hooper JE, Nimmagadda S, Peault B, James AW. Comparison of skeletal and soft tissue pericytes identifies CXCR4+ bone forming mural cells in human tissues. Bone Res. 2020;8:22.
Key words: Bone, mesenchymal stem cell, pericyte, perivascular stem cell, SDF1, CXCR4

https://www.nature.com/articles/s41413-020-0097-0
No PMID available

1. Donde A, Sun M, Jeong YH, Wen X, Ling J, Lin S, Braunstein K, Nie S, Wang S, Chen L, Wong PC. Upregulation of ATG7 attenuates motor neuron dysfunction associated with depletion of TARDBP/TDP-43. Autophagy.. 2020 Apr;16(4):672-82.
Key words: ATG7, amyotrophic lateral sclerosis, frontotemporal dementia, TDP-43, motor neurons
https://www.tandfonline.com/doi/full/10.1080/15548627.2019.1635379
PMID: 31242080

2. Garcia JA, Best SR, Rooper LM. HPV RNA in-situ hybridization as a diagnostic aid in papillary laryngeal lesions. Laryngoscope. 2020 Apr;130(4):955-60.
Key words: Larynx, RNA in-situ hybridization, human papillomavirus, squamous cell carcinoma, squamous papilloma
https://onlinelibrary.wiley.com/doi/full/10.1002/lary.28159
PMID: 31283030

3. Gehrie EA, Tobian AAR. PATCHing platelet data to improve transfusion. Blood. 2020 Apr;135:1309-10.
Key words: antiplatelet agents, blood platelets, cerebral hemisphere hemorrhage, adverse effects
https://ashpublications.org/blood/article-lookup/doi/10.1182/blood.2020005384
No PMID available

4. Goel R, Josephson CD, Patel EU, Petersen MR, Makhani S, Frank SM, Ness PM, Bloch EM, Gehrie EA, Lokhandwala PM, Nellis MM, Karam O, Shaz BH, Patel RM, Tobian AAR. Perioperative transfusions and venous thromboembolism. Pediatrics. 2020 Apr;145(4):e20192351
Key words: Perioperative RBC transfusions, venous thromboembolism (VTE), RBC's, pediatric patients
https://pediatrics.aappublications.org/content/145/4/e20192351
PMID: 32198293

5. Hong SM, Jung D, Kiemen A, Gaida MM, Yoshizawa T, Braxton AM, Noë M, Lionheart G, Oshima K, Thompson ED, Burkhart R, Wu PH, Wirtz D, Hruban RH, Wood LD. Three-dimensional visualization of cleared human pancreas cancer reveals that sustained epithelial-to-mesenchymal transition is not required for venous invasion. Mod Pathol. 2020 Apr; 33(4):639-47.
Key words: pancreatic cancer, 3D analyses, vascular invasion

https://www.nature.com/articles/s41379-019-0409-3
PMID: 31700162

6. Lin MT, Zheng G, Tseng LH, Zhang P, Ling H, Azad N, Gocke CD, Montgomery E, Eshleman JR. Multiclonal colorectal cancers with divergent histomorphological features and RAS mutations: one cancer or separate cancers? Hum Pathol. 2020 Apr;98:120-8.
Key words: multiclonality, colorectal cancer, KRAS, NRAS, parallel evolution
https://www.sciencedirect.com/science/article/pii/S0046817720300514
PMID: 32171651

7. Nieuwenhuis TO, Yang SY, Verma RX, Pillalamarri V, Arking DE, Rosenberg AZ, McCall MN, Halushka MK. Consistent RNA sequencing contamination in GTEx and other data sets. Nat Commun. 2020 Apr 22;11(1):1933.
Key words: RNA-sequencing, GTEx, contamination, expression
https://www.nature.com/articles/s41467-020-15821-9
PMID: 32321923

8. Nix JS, Blakeley J, Rodriguez FJ. An update on the central nervous system manifestations of neurofibromatosis type 1. Acta Neuropathol. 2020 Apr;139(4):625-41.
Key words: Brain tumor, glioma, hydrocephalus, neurofromatosis, neurofibromin
https://link.springer.com/article/10.1007/s00401-019-02002-2
PMID: 30963251

9. Rodriguez EF, Pastorello R, Osmani L, Hopkins M, Kryatova M, Kawamoto S, Maleki Z. Ultrasound-guided transthoracic fine-needle aspiration: a reliable tool in diagnosis and molecular profiling of lung masses. Acta Cytologica 2020 Mar- Apr;64:208-15.
Key words: Lung carcinoma, transthoracic needle aspiration, minimally invasive technique, cytology, adequacy
https://www.karger.com/Article/FullText/501421
PMID: 31362293

10. Xing D, Zhong M, Ye F, O'Malley MT, Li S, Vang R, Ronnett BM. Ovarian intermediate trophoblastic tumors: genotyping defines a distinct category of nongestational tumors of germ cell type. Am J Surg Pathol. 2020 Apr;44(4):516-25.
Key words: pithelioid trophoblastic tumor, new classification, nongestational trophoblastic tumor, ovarian germ cell tumor, placental site trophoblastic tumor
https://journals.lww.com/ajsp/FullText/2020/04000/Ovarian_
Intermediate_Trophoblastic_Tumors_.10.aspx
PMID: 31688005

11. Yang G, Höti N, Chen SY, Zhou Y, Wang Q, Betenbaugh M, Zhang H. One-step enrichment of intact glycopeptides from glycoengineered chinese hamster ovary cells. Front Chem. 2020 Apr;8:240. eCollection 2020.
Key words: Intact glycopeptides, glycoengineered CHO cells, one-step enrichment, FUT8 knockout, mass spectrometry

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7180227/

12. Zhang SX, Carroll KC, Lewis S, Totten M, Mead P, Samuel L, Steed LL, Nolte FS, Thornberg A, Reid JL, Whitfield NN, Babady NE. Multi-center evaluation of a PCR-based digital microfluidics and electrochemical detection system for the rapid identification of 15 fungal pathogens directly from positive blood cultures. J Clin Microbiol 2020 Apr 23;58(5). pii: e02096-19
Key words: Candida, Candida auris, cryptococcus, fusarium, fungi, rhodotorula
https://jcm.asm.org/content/58/5/e02096-19.long
PMID: 32075904

1. Argani P, Zhang L, Sung YS, Bacchi C, Swanson D, Dickson BC, Antonescu CR. Novel SS18-NEDD4 gene fusion in a primary renal synovial sarcoma. Genes Chromosomes Cancer. 2020 Mar;59(3):203-8.
Key words: renal, synovial sarcoma, gene fusions

https://onlinelibrary.wiley.com/doi/full/10.1002/gcc.22814
PMID: 31595587

2. Carroll KC, Reid JL, Thornberg A, Whitfield NN, Trainor D, Lewis S, Wakefield T, Davis TE, Church KG, Samuel L, Mills R, Jim P, Young S, Nolte FS. Clinical performance of the novel GenMark Dx ePlex blood culture ID Gram-positive panel. J Clin Microbiol. 2020 Mar 25;58(4). pii: e01730-19.
Key words: Gram-positive bacteria, blood culture, eSensor technology, identification, multiplex nucleic acid test

https://jcm.asm.org/content/58/4/e01730-19.long
PMID:31996444

3. Cho KC, Clark DJ, Schnaubelt M, Teo GC, Leprevost FDV, Bocik W, Boja ES, Hiltke T, Nesvizhskii AI, Zhang H. Deep proteomics using two dimensional data independent acquisition mass spectrometry. Anal Chem. 2020 Mar;92(6):4217-25.
Key words: two dimensional data independent acquisition (DIA), mass spectrometry, proteomics
https://pubs.acs.org/doi/pdf/10.1021/acs.analchem.9b04418
PMID: 32058701

4. Choi HS, Won T, Hou X, Chen G, Bracamonte-Baran W, Talor MV, Jur?ová I, Szárszoi O, ?urnova L, St?íž I, Hooper JE, Melenovský V, ?iháková D. Innate lymphoid cells play a pathogenic role in pericarditis.
Cell Rep. 2020 Mar;30(9):2989-3003.e6.
Key words: IL-33, innate lymphoid cells, cardiac inflammation, eosinophils, group 2 innate lymphoid cells https://www.sciencedirect.com/science/article/pii/S2211124720302011?via%3Dihub
PMID:32130902

5. Hempel Sullivan H, Heaphy CM, Kulac I, Cuka N, Lu J, Barber JR, De Marzo AM, Lotan TL, Joshu CE, Sfanos KS. High extratumoral mast cell counts are associated with a higher risk of adverse prostate cancer outcomes. Cancer Epidemiol Biomarkers Prev. 2020 Mar;29(3):668-75.
Key words: Prostate cancer, extratumoral mast cell numbers

https://cebp.aacrjournals.org/content/29/3/668.long
PMID: 31932412

6. Jones CB, Davis CM, Sfanos KS. The potential effects of radiation on the gut-brain axis. Radiat Res. 2020 Mar;193(3):209-22.
Key words: enteric nervous system, gut-brain communication, GI microbiome, lipids

https://bioone.org/journals/radiation-research/volume-193/issue-3/RR15493.1/The-Potential-Effects-of-Radiation-on-the-Gut-Brain-Axis/10.1667/RR15493.1.full
PMID: 31898468

7. Kryvenko ON, Williamson SR, Schwartz LE, Epstein JI. Gleason Score 5+3=8 (Grade Group 4) prostate cancer - A rare occurrence with contemporary grading. Hum Pathol. 2020 Mar;97:40-51.
Key words: Gleason score, prostate cancer grading, grade Group

https://www.sciencedirect.com/science/article/pii/S0046817719302072?via%3Dihub
PMID: 31923450

8. Lally K, Kruse RL, Smetana H, Davis R, Roots A, Marshall C, Ness PM, DeZern AE, Gladstone DE, Brennan DC, Desai NM, Tobian AAR, Bloch EM, Gehrie EA. Isohemagglutinin titering performed on an automated solid-phase and hemagglutinin-based analyzer is comparable to results obtained by manual gel testing.
Transfusion. 2020 Mar;60(3):628-66.
Key words: blood transfusion, hemolysis, hemolytic transfusion reactions, isohemagglutinins, laboratory management
https://onlinelibrary.wiley.com/doi/full/10.1111/trf.15671
PMID: 31957889

1. Eich ML, Del Carmen Rodriguez Pena M, Schwartz L, Granada CP, Rais-Bahrami S, Giannico G, Amador BM, Matoso A, Gordetsky JB. Morphology, p16, HPV, and outcomes in squamous cell carcinoma of the penis: a multi-institutional study. Human Path. 2020 Feb;96:79-86.
Key words: HPV, immunohistochemistry, pathology, penis, squamous cell carcinoma
https://www.sciencedirect.com/science/article/
pii/S0046817719301923?via%3Dihub

2. Eshleman SH, Piwowar-Manning E, Wilson EA, Lennon D, Fogel JM, Agyei Y, Sullivan PA, Weng L, Moore A, Laeyendecker O, Kosloff B, Bwalya J, Maarman G, van Deventer A, Floyd S, Bock P, Ayles H, Fidler S, Hayes R, Donnell D; HPTN 071 (PopART) Study Team. Determination of HIV status and identification of incident HIV infections in a large, community-randomized trial: HPTN 071 (PopART). J Int AIDS Soc. 2020 Feb;23(2):e25452. doi: 10.1002/jia2.25452.
Key words: HIV, HPTN, testing, Africa, treatment
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7028526/

3. Grabowski KM, Lessler J, Bazaale J, Nabukalu D5, Nankinga J, Nantume B, Ssekasanvu J, Reynolds SJ, Ssekubugu R, Nalugoda F, Kigozi G, Kagaayi J, Santelli JS, Kennedy C, Wawer MJ, Serwadda D, Chang LW, Gray RH. Migration, hotspots, and dispersal of HIV infection in Rakai, Uganda. Nat Commun. 2020 Feb 20;11(1):976.
Key words: HIV, Africa, Uganda
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7033206/

4. Haney NM, Faisal FA, Lu J, Guedes LB, Reuter VE, Scher HI, Eastham JA, Marchionni L, Joshu C, Gopalan A, Lotan TL. PTEN loss with ERG negative status is associated with lethal disease after radical prostatectomy. J Urol. 2020 Feb;203:1-7.
Key words: PTEN phosphohydrolase, mortality, oncogene proteins, prostatectomy, prostatic neoplasms
https://www.auajournals.org/doi/10.1097/JU.0000000000000533
PMID: 31502941

5. Hassan O, Murati Amador B, Lombardo KA, Salles D, Cuello F, Marwaha AS, Daniels MJ, Kates M, Bivalacqua TJ, Matoso A. Clinical significance of urothelial carcinoma ambiguous for muscularis propria invasion on initial transurethral resection of bladder tumor. World J Urol. 2020 Feb;38(2):389-95.
Key words: cystectomy, muscularis propria, urothelial carcinoma
https://link.springer.com/article/10.1007%2Fs00345-019-02782-y
PMID:31030230

6. Kates M, Matoso A, Choi W, Baras AS, Daniels MJ, Lombardo K, Brant A, Mikkilineni N, McConkey DJ, Kamat AM, Svatek RS, Porten SP, Meeks JJ, Lerner SP, Dinney CP, Black PC, McKiernan JM, Anderson C, Drake CG, Bivalacqua TJ. Adaptive immune resistance to intravesical BCG in non-muscle invasive bladder cancer: implications for prospective BCG-unresponsive trials. Clin Cancer Res. 2020 Feb 15;26(4):882-91.
Key words: Bladder cancer, BCG, PD-L1, immunotherapy
https://clincancerres.aacrjournals.org/content/26/4/882.long
PMID:31712383

7. Knezevic CE, Clarke W. Cancer chemotherapy: the case for therapeutic drug monitoring. Ther Drug Monit. 2020 Feb;42(1):6-19.
Key words: chemotherapy, therapeutic drug monitoring, pharmacokinetics, personalized medicine
https://journals.lww.com/drug-monitoring/FullText/2020/02000/Cancer_
Chemotherapy__The_Case_for_Therapeutic_Drug.2.aspx
PMID: 31568180

8. Liu C, Dillon J, Beavis AL, Liu Y, Lombardo K, Fader AN, Hung CF, Wu TC, Vang R, Garcia JE, Xing D. Prevalence of somatic and germline mutations of fumarate hydratase in uterine leiomyomas from young patients. Histopathology. 2020 Feb;76(3):354-65.
Key words: fumarate hydratase, germline mutation, hereditary leiomyomatosis and renal cell cancer (HLRCC), leiomyomas
https://onlinelibrary.wiley.com/doi/full/10.1111/his.14007
PMID: 31564060

9. Ratmann O, Kagaayi J, Hall M, Golubchick T, Kigozi G, Xi X, Wymant C, Nakigozi G, Abler-Dorner L, Bonsall D, Gall A, Hoppe A, Kellam P, Bazaale J, Kalibbala S, Laeyendecker O, Lessler J, Nalugoda F, Chang LW, de Oliveira T, Pillay D, Quinn TC, Reynolds SJ, Spencer SEF, Ssekubugu R, Serwadda D, Wawer MJ, Gray RH, Fraser C, Grabowski MK on behalf of the Rakai Health Sciences Program and the Pangea HIV Consortium.Quantifying HIV transmission flow between high-prevalence hotspots and surrounding communities: a population-based study in Rakai, Uganda. Lancet HIV. 2020;7:e173-83.
Key words: HIV, Africa
https://www.thelancet.com/journals/lanhiv/article/
PIIS2352-3018(19)30378-9/fulltext

No PMID available

10. Sadasivam M, Noel S, Rabb H, Hamad ARA. Renal double negative T cells: increasing importance in health and disease. Letter to the Editor. Ann Transl Med 2020 Feb;8(4):143
Key words: Double negative T cells, kidney, acute kidney injury, regulatory T cells
http://atm.amegroups.com/article/view/32534/pdf
PMID: 32175435

11. Stein JE, Lipson EJ, Cottrell TR, Forde PM, Anders RA, Cimino-Mathews A, Thompson ED, Allaf ME, Yarchoan M, Feliciano J, Wang H, Jaffee EM, Pardoll DM, Topalian SL, Taube JM. Pan-tumor pathologic scoring of response to PD-(L)1 blockade. Clin Cancer Res. 2020 Feb 1;26(3):545-51.
Key words: irPRC, PD-1, neoadjuvant, pathologic response, MPR
https://clincancerres.aacrjournals.org/content/26/3/545.long
PMID: 31672770

12. Wang Y, Xu J, Meyers CA, Gao Y, Tian Y, Broderick K, Peault B, James AW. PDGFR? marks distinct perivascular populations with different osteogenic potential within adipose tissue. Stem Cells. 2020 Feb;38(2):276-90.
Key words: mesenchymal stem cell, perivasacular stem cells, osteogenesis, adipogenesis, stem cell fate
https://stemcellsjournals.onlinelibrary.wiley.com/doi/
epdf/10.1002/stem.3108

PMID: 31742801

13. Welsh RA, Song N, Foss CA, Boronina T, Cole RN, Sadegh-Nasseri S. Lack of the MHC class II chaperone H2-O causes susceptibility to autoimmune diseases. PLOS Biology 2020 Feb;18(2):1-29 e3000590 open access.
Key words: Autoimmune diseases, T helper cells, regulatory T cells, central nervous system, antigen-presenting cells

https://doi.org/10.1371/journal.pbio.3000590
PMID: 32069316

1. Argani P, Zhang L, Sung YS, White MJ, Miller K, Hopkins M, Small D, Pratilas CA, Swanson D, Dickson B, Antonescu CR. A novel RBMX-TFE3 gene fusion in a highly aggressive pediatric renal PEComa- a brief report. Genes Chromosomes Cancer. Jan 2020;59:58-63.
Key words: kidney, translocation, TFE3:PEComa
https://onlinelibrary.wiley.com/doi/full/10.1002/gcc.22801
PMID: 31408245

2. Chen SY, Dong M, Yang G, Zhou Y, Clark DJ, Lih TM, Schnaubelt M, Liu Z, Zhang H. Glycans, glycosite, and intact glycopeptide analysis of N-Linked glycoproteins using liquid handling systems. Anal Chem. 2020 Jan 3;92(2):1680-6.
Key words: glycans, glycosite, intact glycopeptide, glycoproteins, mass spectrometry
https://pubs.acs.org/doi/full/10.1021/acs.analchem.9b03761
PMID: 31859482

3. Faisal FA, Lotan LJ. The genomic and molecular pathology of prostate cancer: clinical implications for diagnosis, prognosis, and therapy. Adv Anat Pathol. 2020 Jan;27(1):11-19.
Key words: prostate cancer, genomics, molecular pathology
https://insights.ovid.com/pubmed?pmid=31503032
No PMID available

4. Fogel JM, Sivay MV, Cummings V, Wilson EA, Hart S, Gamble T, Laeyendecker O, Fernandez RE, Del Rio C, Batey DS, Mayer KH, Farley JE, McKinstry L, Hughes JP, Remien RH, Beyrer C, Eshleman SH. HIV drug resistance in a cohort of HIV-infected MSM in the United States. AIDS. 2020 Jan 1;34(1):91-101.
Key words: HIV, resistance, MSM, antiretroviral
https://insights.ovid.com/pubmed?pmid=31634196
PMID: 31634196

5. Goggins M, Overbeek KA, Brand R, Syngal S, Del Chiaro M, Bartsch DK, Bassi C, Carrato A, Farrell J, Fishman EK, Fockens P, Gress TM, van Hooft JE, Hruban RH, Kastrinos F, Klein A, Lennon AM, Lucas A, Park W, Rustgi A, Simeone D, Stoffel E, Vasen HFA, Cahen DL, Canto MI, Bruno M; International Cancer of the Pancreas Screening (CAPS) consortium. Management of patients with increased risk for familial pancreatic cancer: updated recommendations from the International Cancer of the Pancreas Screening (CAPS) Consortium. Gut. 2020 Jan;69(1):7-17.
Key words: early detection; familial pancreatic cancer; genetic predisposition; pancreatic ductal adenocarcinoma; surveillance
https://gut.bmj.com/content/69/1/7.long
PMID: 31672839

6. Kim BW, Jeong YE, Wong M, Martin LJ. DNA damage accumulates and responses are engaged in human ALS brain and spinal motor neurons and DNA repair is activatable in iPSC-derived motor neurons with SOD1 mutations. Acta Neuropathol Commun 2020 Jan 31;8(1):7. Open Access
Key words: ATM, apoptosis, base excision repair, DNA N-glycosylase, motor cortex
https://actaneurocomms.biomedcentral.com/articles/10.1186/s40478-019-0874-4
PMID: 32005289

7. Martin AM, Bell WR, Yuan M, Harris L, Poore B, Arnold A, Engle EL, Asnaghi L, Lim M, Raabe EH, Eberhart CG. PD-L1 expression in pediatric low-grade gliomas is independent of BRAF V600E mutational status. J Neuropathol Exp Neurol 2020 Jan;79(1):74-85.
Key words: BRAF, immune response, low-grade glioma, PD-1, PD-L1, tumor infiltrating immune cells
https://academic.oup.com/jnen/article/79/1/74/5670883
PMID: 31819973

8. Maynard JP, Ertunc O, Kulac I, Baena Del Valle JA, De Marzo AM, Sfanos KS. IL8 expression is associated with prostate cancer aggressiveness and androgen receptor loss in primary and metastatic prostate cancer. Mol Cancer Res Jan 2020; 18(1):153-65.
Key words: prostate cancer, IL8
https://mcr.aacrjournals.org/content/18/1/153
PMID: 31604846

9. McGonigle AM, Waters KM, Thoman SK, Vozniak SO, Ness PM, King KE, Tobian AAR, Lokhandwala PM. Solvent detergent treated pooled plasma and prevention of allergic reactions. Transfusion 2020; 60: 54-61.
Key words: transfusion reactions, thrombotic thrombocytopenic purpura (TTP), plasma

https://onlinelibrary.wiley.com/doi/full/10.1111/trf.15600
PMID: 31840276

10. Shabihkhani M, Simpson JF, White MJ, Cimino-Mathews A, Argani P. Artifactual displacement of ductal carcinoma in situ (ADDCIS) (Toothpaste Effect): A mimicker of invasive ductal carcinoma. Am J Surg Pathol. 2020 Jan;44(1):120-8.
Key words: breast, ductal carcinoma in situ, artifact, mimic
https://insights.ovid.com/crossref?an=00000478-202001000-00013
PMID: 31503011

1. Al-Hussain T, Haffner MD, Altaweel WM, Epstein JI. Plasmacytoid acinar adenocarcinoma of the prostate: a newly described variant of prostate cancer. Hum Pathol. 2019 Dec;94:86-91.
Key words: prostate cancer, plamacytoid, adenocarcinoma, variants

https://www.sciencedirect.com/science/article/pii/
S0046817719301984?via%3Dihub
PMID: 31698007

2. Alruwaii ZI, Zhang Y, Larman T, Miller JA, Montgomery EA. Rosai-Dorfman disease of the digestive system-beware vasculopathy: a clinicopathologic analysis. Am J Surg Pathol. 2019 Dec;43(12):1644-52.
Key words: Rosai-Dorfman disease, vasculopathy

https://journals.lww.com/ajsp/Fulltext/2019/12000/Rosai_
Dorfman_Disease_of_the_Digestive.7.aspx
PMID: 31414989

3. Asrani K, Murali S, Lam B, Na CH, Phatak P, Sood A, Kaur H, Khan Z, Noë M, Anchoori RK, Talbot CC Jr, Smith B, Skaro M, Lotan TL. mTORC1 feedback to AKT modulates lysosomal biogenesis through MiT/TFE regulation. J Clin Invest. 2019 Dec;129(12):5584-99.
Key words: mTORC1, TSC, Lysosomes, TFE3, EGFR, Genetic diseases, Metabolism, Oncology
https://www.jci.org/articles/view/128287
PMID: 31527310

4. Cheng W, Wang S, Zhang Z, Morgens DW, Hayes LR, Lee S, Portz B, Xie Y, Nguyen BV, Haney MS, Yan S, Dong D, Coyne AN, Yang J, Xian F, Cleveland DW, Qiu Z, Rothstein JD, Shorter J, Gao FB, Bassik MC, Sun S. CRISPR-Cas9 screens identify the RNA helicase DDX3X as a repressor of C9ORF72 (GGGGCC)n repeat-associated non-AUG translation. Neuron. 2019 Dec;104(5):885-98.e8.
Key words: neurodegeneration, repeat expansion, ALS, FTD, RNA

https://www.sciencedirect.com/science/article/pii/S0896627319307767
PMID: 31587919

5. Chui MH, Kjaer SK, Frederiksen K, Hannibal CG, Wang TL, Vang R, Shih IM. BRAFV600E -mutated ovarian serous borderline tumors are at relatively low risk for progression to serous carcinoma. Oncotarget. 2019 Dec 3;10(64):6870-8.
Key words: ovary, serous borderline tumor, BRAF, serous carcinoma

http://www.oncotarget.com/index.php?journal=oncotarget&page=
article&op=view&path[]=27326&pubmed-linkout=1

PMID: 31839880

6. Gupta RK, Rosenberg AZ, Bagnasco SM, Arend LJ. Renal crystal-storing histiocytosis involving glomeruli-A comprehensive clinicopathologic analysis. Ann Diagn Pathol. 2019 Dec;43:151403.
Key words: Crystal-storing histiocytosis (CSH), dysproteinemia, kidney biopsy, multiple myeloma, plasma cell dyscrasia
https://www.sciencedirect.com/science/article/pii/S1092913419303235?via%3Dihub
PMID: 31494491

7. Hutchings D, Jiang Z, Skaro M, Weiss MJ, Wolfgang CL, Makary MA, He J, Cameron JL, Zheng L, Klimstra DS, Brand RE, Singhi AD, Goggins M, Klein AP, Roberts NJ, Hruban RH. Histomorphology of pancreatic cancer in patients with inherited ATM serine/threonine kinase pathogenic variants. Mod Pathol. 2019 Dec;32:1806-13.
Key words: pancreatic cancer, histomorphology, ATM serine/threonine kinase, gene

https://www.ncbi.nlm.nih.gov/pubmed/31285527

8. Karaba AH, Blair PW, Martin K, Saheed MO Carroll KC Borowitz MJ. The effects of a systemwide diagnostic stewardship change on West Nile Virus disease ordering practices. Open Forum Infectious Diseases. 2019 Dec;6(12): ofz488 (online only)
Key words: West Nile Virus, Nucleic Acid Amplification tests, stewardship

https://academic.oup.com/ofid/article/6/12/ofz488/5625823
No PMID available

9. Kroloff M, Crane G, Press R, Lee S, Larson S, Xian R. Next-generation sequencing analysis in posttransplant relapsed acute myeloid leukemia reveals clonal evolution and donor-derived germline variant indicating bone marrow chimerism. AJSP: Review and Reports. 2019 Nov/Dec;24(6):260-2. Case Review.
Key words: acute myeloid leukemia, next-generation sequencing, bone marrow transplant, tumor mutations

https://journals.lww.com/pathologycasereviews/fulltext/
2019/11000/Next_Generation_Sequencing_Analysis_in.4.aspx

No PMID available

10. Le A, Udupa S, Zhang C. The metabolic interplay between cancer and other diseases. Trends in Cancer.. 2019 Dec;5(12):P809-21.
Key words: cancer metabolism, diabetes, cardiovascular diseases, neurological diseases, obesity

https://www.cell.com/action/showPdf?pii=S2405-8033%2819%2930219-5
PMID: 31813458

11. Li Z, Meyers CA, Chang L, Lee S, Li Z, Tomlinson R, Hoke A, Clemens TL, James AW. Fracture repair requires TrkA signaling by skeletal sensory nerves. J Clin Invest. 2019 Dec 2;129(12):5137-50.
Key words: bone, bone healing, tissue repair, fracture repair, skeletal nerves
https://www.jci.org/articles/view/128428
PMID: 31638597

12. Payer LM, Burns KH. Transposable elements in human genetic disease. Nat Rev Genet. 2019 Dec;20(12):760-72. (Review)
https://www.nature.com/articles/s41576-019-0165-8
PMID: 31515540

13. Rooper LM, McCuiston AM, Westra WH, Bishop JA. SOX10 Immunoexpression in basaloid squamous cell carcinomas: a diagnostic pitfall for ruling out salivary differentiation. Head Neck Pathol. 2019 Dec;13(4):543-7.
Key words: basaloid squamous cell carcinoma, human papillomavirus, immunohistochemistry, SOX10, squamous cell carcinoma
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6854191/

14. Vizcaino MA, Tabbarah AZ, Asnaghi L, Maktabi A, Eghrari AO, Srikumaran D, Eberhart CG, Rodriguez FJ. ADAM3A copy number gains occur in a subset of conjunctival squamous cell carcinoma and its high grade precursors. Hum Pathol. 2019 Dec;94:92-97.
Key words: ADAM3A, conjunctiva, conjunctival squamous intraepithelial neoplasia, ocular surface carcinoma, squamous cell carcinoma
https://www.sciencedirect.com/science/article/pii/
S0046817719301601?via%3Dihub

PMID: 31493427

1. Chui MH, Xing D, Zeppernick F, Wang ZQ, Hannibal CG, Frederiksen K, Kjaer SK, Cope L, Kurman RJ, Shih IM, Wang TL, Vang R. Clinicopathologic and molecular features of paired cases of metachronous ovarian serous borderline tumor and subsequent serous carcinoma. Am J Surg Pathol. 2019 Nov;43(11):1462-72.
Key words: Ovary, serous borderline tumor, serous carcinoma, clonality, tumor progression
https://insights.ovid.com/crossref?an=00000478-201911000-00002
PMID: 31343420

2. Donde A, Sun M, Ling JP, Braunstein KE, Pang B, Wen X, Cheng X, Chen L, Wong PC. Splicing repression is a major function of TDP-43 in motor neurons. Acta Neuropathol. 2019 Nov;138(5):813-826.
Key words: amyotrophic lateral sclerosis, cryptic exon, drosophila, motor neuron, mouse
https://link.springer.com/article/10.1007%2Fs00401-019-02042-8
PMID:31332509

3. Hansen G, Young S, Wu AHB, Herding E, Nordberg V, Mills R, Griego-Fullbright C, Wagner A, Ong CM, Lewis S, Yoon J, Estis J, Sandlund J, Friedland E, Carroll KC. Ultrasensitive detection of Clostridioides difficile toxins in stool using single molecule counting technology: Comparison with CCCNA free toxin detection. J Clin Microbiol. 2019 Oct 23;57(11). pii: e00719-19. doi: 10.1128/JCM.00719-19. Print 2019 Nov.
Key words: Clostridium difficile, toxin, single molecule counting technology, enzyme immunoassays
https://jcm.asm.org/content/57/11/e00719-19.long
PMID: 31434724

4. Hill MR, Hopkins MR, Knezevic CE. Emerging toxidromes: a 25-year-old woman with syncope and ECG changes. Clin Chem. 2019 Nov;65(11):1357-62.
Key words: toxidromes, syncope, ECG
http://clinchem.aaccjnls.org/content/65/11/1357.long
PMID: 31662334

5. Idrees MT, Ulbright TM, Epstein JI. Fluorescent in situ hybridization (FISH) analysis for 12p alterations in sarcomatoid yolk sac tumors. Am J Surg Pathol 2019 Nov;43(11):1566-73.
Key words: testis germ cell tumors, sarcomatoid yolk sac tumor, fluorescent in situ hybridization, isochromosome12p overrepresentation, isochromosome 12p
https://insights.ovid.com/crossref?an=00000478-201911000-00014
PMID: 31478941

6. Porter CM, Haffner MC, Kulac I, Maynard JP, Baena-Del Valle JA, Isaacs WB, Yegnasubramanian S, De Marzo AM, Sfanos KS. Lactoferrin CpG island hypermethylation and decoupling of mRNA and protein expression in the early stages of prostate carcinogenesis. Am J Pathol. 2019 Nov;189(11):2311-22.
Key words: lactoferrin (LTF), prostate cancer, hypermethylation

https://www.sciencedirect.com/science/article/pii/S0002944019306984?via%3Dihub
PMID: 31499027

7. Samarska IV, Epstein JI. Condyloma acuminatum of urinary bladder: relation to squamous cell carcinoma. Am J Surg Pathol. 2019 Nov;43(11):1547-53.
Key words: bladder carcinoma, condyloma acuminatum, urniary bladder, squamous cell carcinoma, HPV
https://insights.ovid.com/crossref?an=00000478-900000000-97595
PMID: 31368913

8. Udupa S, Nguyen S, Hoang G, Nguyen T, Quinones A, Pham K, Asaka R, Nguyen K, Elgogary A, Jung JG, Xu Q, Fu J, Thomas AG, Tsukamoto T, Hanes J, Slusher BS, Cooper AJL, Le A. Upregulation of the glutaminase II pathway contributes to glutamate production upon glutaminase 1 inhibition in pancreatic cancer. Proteomics. 2019 Nov;19(21-22):e1800451.
Key words: glutaminase 1 inhibition, glutaminase II pathway, glutamine transaminase K (GTK), ?-ketoglutaramate (KGM), patient-derived orthotopic pancreatic cancer
https://onlinelibrary.wiley.com/doi/abs/10.1002/pmic.201800451
PMID: 31231915

9. Workneh M, Wang R, Kazmi AQ, Chambers KK, OpeneBNA, Lewis S, Goodman K, Tamma PD, Carroll K, Milstone AM, Simner PJ for the CDC Prevention Epicenters Program. Evaluation of the direct MacConkey method for identification of carbapenem-resistant gram-negative organisms from rectal swabs: re-evaluating zone diameter cutoffs. J Clin Microbiol. 2019 Nov 22;57(12). pii: e01127-19.
Key words: CRO; carbapenem-resistant organism; colonization; direct MacConkey Plate method; method
https://jcm.asm.org/content/57/12/e01127-19.long
PMID: 31597748

1. Clark DJ, Dhanasekaran SM, Petralia F, Pan J, Song X, et al. Clinical proteomic tumor analysis consortium. integrated proteogenomic characterization of clear cell renal cell carcinoma. Cell 2019 Oct;179(4):964-83.e31.
Key words: ccRCC, proteogenomic, immune infiltration, drug targets, CPTAC
https://www.sciencedirect.com/science/article/pii/
S0092867419311237?via%3Dihub
PMID: 31675502

2. Fischer CG, Guthrie VB, Braxton AM, Zheng L, Wang P, Song Q, Griffin JF, Chianchiano PE, Hosoda W, Niknafs N, Springer S, Molin MD, Masica D, Scharpf RB, Thompson ED, He J, Wolfgang CL, Hruban RH, Roberts NJ, Lennon AM, Jiao Y, Karchin R, Wood LD. Intraductal papillary mucinous neoplasms arise from multiple independent clones, each with distinct mutations. Gastroenterology. 2019 Oct;157(4):1123-37.e22.
Key words: PDAC, carcinogenesis, driver gene, oncogene
https://www.sciencedirect.com/science/article/pii/
S0016508519409876?via%3Dihub
PMID:31175866

3. Gehrie EA, Rutter SJ, Snyder EL. Pathogen reduction: The State of the Science in 2019. Hematol Oncol Clin North Am. 2019 Oct;33(5):749-66.
Key words: blood transfusion, pathogen reduction, plasma transfusion, platelet transfusion, red blood cell transfusion
https://www.sciencedirect.com/science/article/pii/
S0889858819300590?via%3Dihub
PMID: 31466602

4. Matsushita Y, Smith B, Delannoy M, Trujillo MA, Chianchiano P, McMillan R, Kamiyama H, Liang H, Thompson ED, Hruban RH, Matsui W, Wood LD, Roberts NJ, Eshleman JR. Biphenotypic differentiation of pancreatic cancer in 3-dimensional culture. Pancreas. 2019 Oct;48(9):1225-31.
Key words: biophenotype, pancreatic cancer

https://insights.ovid.com/crossref?an=00006676-201910000-00016
PMID: 31593010

5. Miller JA, An D, Shafique K, Song S, Rao RA, Viswanathan K, Eykman E, Wiles A, Ali SZ, Field A, Fadda G, Barkan GA, Layfield LJ, Rossi ED, Powers CN, Siddiqui MT, Kholova I, Baloch Z, Maleki Z. Mucoepidermoid carcinoma, acinic cell carcinoma, and adenoid cystic carcinoma on fine-needle aspiration biopsy and The Milan System: an international multi-institutional study. J Am Soc Cytopathol. 2019 Sep-Oct;8(5):270-7.
Key words: Acinic cell carcinoma, adenoid cystic carcinoma, fine-needle aspiration, mucoepidermoid carcinoma, risk of malignancy
https://www.sciencedirect.com/science/article/pii/S221329451930033X?via%3Dihub
PMID: 31104944

6. Miller KP, Venkataraman G, Gocke CD, Batista DA, Borowitz MJ, Burns KH, Pratz K, Duffield AS. Bone marrow findings in patients with acute promyelocytic leukemia treated with arsenic trioxide. Am J Clin Pathol. 2019 Oct 7;152(5):675-85.
Key words: acute promyelocytic leukemia, all-trans retinoic acid, arsenic trioxide
https://academic.oup.com/ajcp/article/152/5/675/5532258
PMID: 31305869

7. Palumbo PJ, Zhang Y, Fogel JM, Guo X, Clarke W, Breaud A, Richardson P, Piwowar-Manning E, Hart S, Hamilton EL, Hoa NTK, Liulchuk M, Anandari L, Ha TV, Dumchev K, Djoerban Z, Hoffman I, Hanscom B, Miller WC, Eshleman SH. HIV drug resistance in persons who inject drugs enrolled in an HIV prevention trial in Indonesia, Ukraine, and Vietnam: HPTN 074. PLoS One. 2019 Oct 10;14(10):e0223829.
Key words: HIV, resistance, substance use, HPTN
https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0223829
PMID:31600343

8. Tseng LH, De Marchi F, Pallavajjalla A, Rodriguez E, Xian R, Belchis D, Gocke CD, Eshleman JR, Illei P, Lin MT. Clinical validation of discordant trunk driver mutations in paired primary and metastatic lung cancer specimens. Am J Clin Pathol. 2019 Oct;152(5):570-81.
Key words: trunk driver mutations, lung cancers, KRAS, EGFR, quality assessment
https://academic.oup.com/ajcp/advance-article/doi/10.1093/ajcp/aqz077/5527153
PMID: 31264684

9. Verdugo D, Voltaggio L, Hoot A, Rodriguez FJ. Cerebral pleomorphic liposarcoma: Clinicopathologic findings. Clin Neuropathol. 2019 Sep/Oct;38(5):233-7.
Key words: clinopathology, cerebral pleomorphic liposarcoma
https://www.dustri.com/nc/article-response-page.html?artId=185452&doi=
PMID:31347491

10. Ware AD, Wake L, Brown P, Webster JA, Smith BD, Duffield AS. B-lymphoid blast phase of chronic myeloid leukemia: A case report and review of the literature. AJSP: Reviews & Reports: September/October 2019;24(5):191-5.
Key words: Leukemia, TKI therapy, B-lymphoid, bone marrow

https://journals.lww.com/pathologycasereviews/Fulltext/2019/09000/B_
Lymphoid_Blast_Phase_of_Chronic_Myeloid.2.aspx

1. Cheah JX, Nieuwenhuis TO, Halushka MK. An expanded proteome of cardiac t-tubules. Cardiovasc Pathol. 2019 Sept-Oct;42:15-20.
Key words: Caveolin, proteomics, T-tubule

https://www.sciencedirect.com/science/article/pii/S1054880719300614?via%3Dihub
PMID: 31202980

2. Duregon E, Schneider J, DeMarzo AM, Hooper JE. Rapid research autopsy is a stealthy but growing contributor to cancer research. Cancer. 2019 Sep;125(17):2915-9.
Key words: autopsy, cancer research, metastases, postmortem, rapid autopsy
https://onlinelibrary.wiley.com/doi/full/10.1002/cncr.32184
PMID: 31090935

3. Hsu C, Salazar MG, Miller S, Meyers C, Ding C, Hardy WR, Peault B, James AW. Comparison of human tissue microarray to human pericyte transcriptome yields novel perivascular cell markers. Stem Cells Dev. 2019 Sep 15;28(18):1214-23.
Key words: pericyte, perivascular stem cells, mesenchymal stem cells
https://www.liebertpub.com/doi/full/10.1089/scd.2019.0106?url_ver=Z39.88-2003&rfr_id=ori:rid:crossref.org&rfr_dat=cr_pub%3dpubmed
PMID: 31264500

4. Khani F, Wobker SE, Hicks JL, Robinson BD, Barbieri CE, De Marzo AM, Epstein JI, Pritchard CC, Lotan TL. Intraductal carcinoma of the prostate in the absence of high-grade invasive carcinoma represents a molecularly distinct type of in situ carcinoma enriched with oncogenic driver mutations. J Pathol. 2019 Sep;249(1):79-89.
Key words: MAPK, PI3K, intraductal carcinoma, oncogenic driver mutations, prostate cancer
https://onlinelibrary.wiley.com/doi/full/10.1002/path.5283

5. Li J, Lai H, Chen S, Kickler T, Lai S. Cocaine use modifies the association between antiretroviral therapy and endothelial dysfunction among adults with HIV infection. J Med Virol 2019 Sep;91(9):1660-7.
Key words: HIV infection, antiretroviral therapy, cocaine use, endothelin-1, von Willebrand factor antigen
https://onlinelibrary.wiley.com/doi/full/10.1002/jmv.25507

6. Mitchell SL, Simner PJ. Next-generation sequencing in clinical microbiology: are we there yet? Clin Lab Med. 2019 Sep;39(3):405-18.
Key words: clinical microbiology, infectious disease, metagenomics next-generations sequencing (mNGS), Next-generation sequencing (NGS), targeted next-generation sequencing (tNGS)
https://www.sciencedirect.com/science/article/pii/S0272271219300307?via%3Dihub
PMID: 31383265

7. Park Y, Chui MH, Suryo Rahmanto Y, Yu ZC, Shamanna RA, Bellani MA, Gaillard S, Ayhan A, Viswanathan A, Seidman MM, Franco S, Leung AKL, Bohr VA, Shih IM, Wang TL. Loss of ARID1A in tumor cells renders selective vulnerability to combined ionizing radiation and PARP inhibitor therapy. Clin Cancer Res. 2019 Sep 15;25(18):5584-94.
https://clincancerres.aacrjournals.org/content/25/18/5584.long
PMID: 31196855

8. Patel EU, Bloch EM, Grabowski MK, Goel R, Lokhandwala PM, Brunker PAR, White JL, Shaz B, Ness PM, Tobian AAR. Sociodemographic and behavioral characteristics associated with blood donation in the United States: a population-based study. Transfusion. 2019 Sep;59(9):2899-907.
https://onlinelibrary.wiley.com/doi/full/10.1111/trf.15415
PMID: 31222779

9. Sadegh-Nasseri S, Kim A. Selection of immunodominant epitopes during antigen processing is hierarchical. Mol Immunol. 2019 Sep;113:115-9.
Key words: immunodominance, antigen processing, T cell epitope, mass spectrometry
https://www.sciencedirect.com/science/article/pii/S0161589018306539?via%3Dihub
PMID: 30146122

10. Wang Q, Yang G, Wang T, Yang W, Betenbaugh MJ, Zhang H. Characterization of intact glycopeptides reveals the impact of culture media on site-specific glycosylation of EPO-Fc fusion protein generated by CHO-GS cells. Biotechnol Bioeng. 2019 Sep;116(9):2303-15.
Key words: CHO-GS cells, EPO-Fc protein, culture media, intact glycopeptide analysis, site-specific glycosylation
https://onlinelibrary.wiley.com/doi/full/10.1002/bit.27009
PMID:31062865

11. Ware AD, Murdock T, Voltaggio L, Windon AL, Troncoso JC, Hruban RH, White MJ. The "Race" toward diversity, inclusion, and equity in pathology: The Johns Hopkins Experience. Acad Pathol 2019 Sep 8;6:2374289519873104.
Key words: diversity, medical student, outreach, pathology, pipeline

https://www.ncbi.nlm.nih.gov/pubmed/31523705

12. Wobker SE, Matoso A, Pratilas CA, Mangray S, Zheng G, Lin MT, Debeljak M, Epstein JI, Argani P. Metanephric adenoma-epithelial Wilms tumor overlap lesions: an analysis of BRAF status. Am J Surg Pathol. 2019 Sep;43(9):1157-69.
Key words: Wilms, metanephric, BRAF, kidney
https://insights.ovid.com/crossref?an=00000478-201909000-00001
PMID:31192863

13. Xing D, Berrebi AA, Liu C, Richmond A, Vang R, Ronnett BM. An epithelioid smooth muscle neoplasm mimicking a signet ring cell carcinoma in the ovary. Int J Gynecol Pathol. 2019 Sep;38(5):464-9.
Key words: ovary, epithelioid muscle neoplasm, signet ring cell carcinoma

https://insights.ovid.com/pubmed?pmid=29750703
PMID:29750703

14. Xu J, Wang Y, Hsu CY, Gao Y, Meyers CA, Chang L, Zhang L, Broderick K, Ding C, Peault B, Witwer K, James AW. Human perivascular stem cell-derived extracellular vesicles mediate bone repair. Elife. 2019 Sep 4;8. pii: e48191. doi: 10.7554/eLife.48191.
Key words: osteogenesis, bone formation, bone tissue engineering, mesenchymal stem cells, exosomes
https://elifesciences.org/articles/48191
PMID:31482845

15. Zheng G, Richmond A, Liu C, Berrebi A, Pallavajjala A, Haley L, Stone RL, McCarthy E, Vang R, Xing D. Clinicopathologic features and genetic alterations of a primary osteosarcoma of the uterine corpus. Int J Gynecol Pathol. 2019 Sep;38(5):414-9.
Key words: osteosarcoma, uterus, clinicopathology
https://insights.ovid.com/pubmed?pmid=29629977
PMID: 29629977

1. Boivin MJ, Maliwichi-Senganimalunje L, Ogwang LW, Kawalazira R, Sikorskii A, Familiar-Lopez I, Kuteesa A, Nyakato M, Mutebe A, Namukooli JL, Mallewa M, Ruiseñor-Escudero H, Aizire J, Taha TE, Fowler MG. Neurodevelopmental effects of ante-partum and post-partum antiretroviral exposure in HIV-exposed and uninfected children versus HIV-unexposed and uninfected children in Uganda and Malawi: a prospective cohort study. Lancet HIV. 2019 Aug;6(8):PE518-E530.
Key words: HIV exposure, Uganda, Malawi, neurodevelopmental effects
https://www.thelancet.com/journals/lanhiv/article/PIIS2352-3018(19)30083-9/fulltext
PMID: 31122797

2. Fenwick AJ, Carroll KC. Practical problems when incorporating rapidly changing microbial taxonomy into clinical practice. Clin Chem Lab Med. 2019 Aug 27;57(9):e238-e240. (Letter to Editor)
Key words: microbiology, new, problems, taxonomy

https://www.degruyter.com/view/j/cclm.ahead-of-print/cclm-
2018-1068/cclm-2018-1068.xml
PMID: 30721139

3. Groot VP, Mosier S, Javed AA, Teinor JA, Gemenetzis G, Ding D, Haley LM, Yu J, Burkhart RA, Hasanain A, Debeljak M, Kamiyama H, Narang A, Laheru DA, Zheng L, Lin MT, Gocke CD, Fishman EK, Hruban RH, Goggins MG, Molenaar IQ, Cameron JL, Weiss MJ, Velculescu VE, He J, Wolfgang CL1, Eshleman JR. Circulating tumor DNA as a clinical test in resected pancreatic cancer. Clin Cancer Res. 2019 Aug;25(16):4973-84.
Key words: tumor DNA, pancreatic cancer
https://clincancerres.aacrjournals.org/content/25/16/4973.long
PMID: 31142500

4. Hamad ARA, Sadasivam M, Rabb H. Hybrid lipids, peptides, and lymphocytes: new era in type 1 diabetes research. J Clin Invest. 2019 Aug;130:3527-9.
Key words: lipids, peptides, lymphocytes, type 1 diabetes
https://www.jci.org/articles/view/130313
PMID:31380812

5. Pederzoli F, Murati Amador B, Samarska I, Lombardo KA, Kates M, Bivalacqua TJ, Matoso A. Diagnosis of urothelial carcinoma in situ using blue light cystoscopy and the utility of immunohistochemistry in blue light-positive lesions diagnosed as atypical. Hum Pathol. 2019 Aug;90:1-7.
Key words: Blue light cystoscopy, photosensitizing agents, urothelial carcinoma in situ
https://www.sciencedirect.com/science/article/pii/S0046817719300838?via%3Dihub
PMID: 31071342

6. Rodriguez FJ, Graham MK, Brosnan-Cashman JA, Barber JR, Davis C, Vizcaino MA, Palsgrove DN, Giannini C, Pekmezci M, Dahiya S, Gokden M, Noë M, Wood LD, Pratilas CA, Morris CD, Belzberg A, Blakeley J, Heaphy CM. Telomere alterations in neurofibromatosis type 1-associated solid tumors. Acta Neuropathol Commun. 2019 Aug;7(1):139.
Key words: telomere, neurofibromatosis, solid tumors
https://actaneurocomms.biomedcentral.com/articles/10.1186/s40478-019-0792-5
PMID:31462295

7. Tamma PD, Kazmi A, Bergman Y, Goodman KE, Ekunseitan E, Amoah J, Simner PJ. The likelihood of developing a carbapenem-resistant Enterobacteriaceae infection during a hospital stay. Antimicrob Agents Chemother. 2019 Jul 25;63(8). pii: e00757-19. doi: 10.1128/AAC.00757-19. Print 2019 Aug.
Key words: CRE, ICU, carbapenem resistance, multidrug-resistant organisms
https://aac.asm.org/content/63/8/e00757-19.long
PMID:31138574

1. Gehrie EA, M. Frank SM, Visagie M, Grabowski MK, Tobian AAR, Strockbine VS, DeMario VM, Lawrence C, Hambley B, Uglik K, Ness PM, Dezern A, Bloch EM. One-unit compared to two-unit unit platelet transfusions for adult oncology outpatients. Vox Sang. 2019 Jul;114(5):517-22.
Key words: blood components, patient blood management, platelet concentrates, platelet transfusion, refractoriness (platelets), transfusion strategy
https://onlinelibrary.wiley.com/doi/full/10.1111/vox.12785
PMID: 31056742

2. Hou X, Chen G, Bracamonte-Baran W, Choi HS, Diny NL, Sung J, Hughes D, Won T, Wood MK, Talor MV, Hackam DJ, Klingel K, Davogustto G, Taegtmeyer H, Coppens I, Barin JG, ?iháková D. The cardiac microenvironment instructs divergent monocyte fates and functions in myocarditis. Cell Rep. 2019 Jul;28(1):172-189.e7
Key words: myocarditis, macrophages, cardiac immunity

https://www.sciencedirect.com/science/article/pii/S221112471930765X?via%3Dihub
PMID: 31269438

3. Lokhandwala PM, Tseng LH, Rodriguez E, Zheng G, Pallavajjalla A, Gocke CD, Eshleman JR, Lin MT. Clinical mutational profiling and categorization of BRAF mutations in melanomas using next generation sequencing. BMC Cancer. 2019 Jul;19(1):665.
Key words: BRAF, categorization, kinase-impaired, melanoma, NRAS
https://www.ncbi.nlm.nih.gov/pubmed/31277584

4. Springer S, Masica DL, Dal Molin M, Douville C, Thoburn CJ, Afsari B, Li L, Cohen JD, Thompson E, Allen PJ, Klimstra DS, Schattner MA, Schmidt CM, Yip-Schneider M, Simpson RE, Fernandez-Del Castillo C, Mino-Kenudson M, Brugge W, Brand RE, Singhi AD, Scarpa A, Lawlor R, Salvia R, Zamboni G, Hong SM, Hwang DW, Jang JY, Kwon W, Swan N, Geoghegan J, Falconi M, Crippa S, Doglioni C, Paulino J, Schulick RD, Edil BH, Park W, Yachida S, Hijioka S, van Hooft J, He J, Weiss MJ, Burkhart R, Makary M, Canto MI, Goggins MG, Ptak J, Dobbyn L, Schaefer J, Sillman N, Popoli M, Klein AP, Tomasetti C, Karchin R, Papadopoulos N, Kinzler KW, Vogelstein B, Wolfgang CL, Hruban RH, Lennon AM. A mulitmodality test to guide the management of patients with a pancreatic cyst. Sci Transl Med. 2019 Jul;11(501). pii: eaav4772. doi: 10.1126/scitranslmed.aav4772.
https://stm.sciencemag.org/content/11/501/eaav4772.short
PMID: 31316009

5. White JL, Patel EU, Abraham AG, Grabowski, MK, Arav-Boger R, Avery RK, Thomas DL, Tobian AAR. Prevalence, magnitude and genotype distribution of urinary cytomegalovirus (CMV) shedding among CMV-seropositive children and adolescents in the United States. Open Forum Infect Dis. 2019 Jul;6(7):ofz272.
Key words: National Health and Nutrition Examination Survey (NHANES), cytomegalovirus (CMV), genotype, shedding
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6602884/pdf/ofz272.pdf

6. Xing D, Zheng G, Pallavajjala A, Schoolmeester JK, Liu Y, Haley L, Hu Y, Liu L, Logan L, Lin Y, Pearce KE, Sattler CA, Tsai YC, Vang R, Hung CF, Wu TC, Ronnett BM. Lineage-specific alterations in gynecologic neoplasms with choriocarcinomatous differentiation: implications for origin and therapeutics. Clin Cancer Res. 2019 Jul;25(14):4516-29.
Key words: Gynecologic tumors, choriocarcinomatous differentiation, mutations, single nucleotide polymorphisms, PD-L1
https://clincancerres.aacrjournals.org/content/early/2019/04/20/1078-0432.CCR-18-4278
PMID: 31010836

1. Ciháková D, Eaton WW, Talor MV, Harkus UH, Demyanovich H, Rodriguez K, Feldman S, Kelly DL. Gut permeability and mimicry of the Glutamate Ionotropic Receptor NMDA type Subunit Associated with protein 1 (GRINA) as potential mechanisms related to a subgroup of people with schizophrenia with elevated antigliadin antibodies (AGA IgG). Schizophr Res. 2019 Jun;208:414-9.
Key words: AGA, ASCA, GRINA, gliadin, gluten sensitivity, schizophrenia
https://www.sciencedirect.com/science/article/pii/S0920996419300076?via%3Dihub
PMID: 30685393

2. Hickey JW, Dong Y, Chung JW, Salathe SF, Pruitt HC, Li X, Chang C, Fraser AK, Bessell Ca, Ewald AJ, Gerecht S, Mao HQ, Schneck JP. Engineering an artificial T?cell stimulating matrix for immunotherapy. Advanced Materials. 2019 Jun;31(23):e1807359.
Key words: adoptive T cell therapy, artificial matrix, extracellular matrix, hydrogel, immunotherapy
https://onlinelibrary.wiley.com/doi/full/10.1002/adma.201807359
PMID: 30968468

3. Hruban RH, Gaida MM, Thompson E, Hong SM, Noë M, Brosens LA, Jongepier M, Offerhaus GJA, Wood LD. Why is pancreatic cancer so deadly? The pathologist's view. J Pathol. 2019 Jun;248(2):131-41.
Key words: pancreas, pancreas cancer, pancreatic cancer, prognosis, tumor immune microenvironment
https://onlinelibrary.wiley.com/doi/full/10.1002/path.5260c
PMID: 30838636

4. James AW, Péault B. Perivascular mesenchymal progenitors for bone regeneration. J Orthop Res. 2019 Jun;37(6):1221-8.
Key words: pericyte, stem cell, bone, bone repair
https://onlinelibrary.wiley.com/doi/full/10.1002/jor.24284
PMID: 30908717

5. Kwon R, Duffield AS. HTLV-1-associated adult T-cell leukemia/lymphoma with disseminated strongyloidiasis. Blood. 2019 Jun 13;133(24):2623.
Key words: infectious diseases, Strongyloides, leukemia, lymphoma, HTLV-1
http://www.bloodjournal.org/content/133/24/2623.long
PMID: 31196878

6. Murati Amador B, Matoso A. Testicular germ cell tumor showing concurrent PNET and neuroglial neoplasms With Wide Spectrum of Grades. Am J Surg Pathol. 2019 Jun;43(6):865-7. (letter to Editor)
Key words: germ cell tumor, neuroglial neoplasm, PNET
https://insights.ovid.com/pubmed?pmid=31091205
PMID: 31091205

7. Sono T, Ware AD, McCarthy EF, James AW. Chondromyxoid fibroma of the pelvis: institutional case series with a focus on distinctive features. Int J Surg Pathol. 2019 Jun;27(4):352-9.
Key words: Bone tumors, skeletal tumors, cartilage tumors, chondrosarcoma
https://journals.sagepub.com/doi/full/10.1177/1066896918820446?url_ver=Z39.88-2003&rfr_id=ori%3Arid%3Acrossref.org&rfr_dat=cr_pub%3Dpubmed
PMID: 30580642

8. Toonstra C, Hu Y, Zhang H. Deciphering the roles of N-Glycans on collagen-platelet interactions. J Proteome Res. 2019 Jun 7;18(6):2467-77.
Key words: N-glycans, affinity purification, collagen, collagen-platelet interactions, glycoproteins
https://pubs.acs.org/doi/10.1021/acs.jproteome.9b00003
PMID: 31055923

1. Ahmed R, Omidian Z, Giwa A, Cornwell B, Majety N, Bell DR, Lee S, Zhang H, Michels A, Desiderio S, Sadegh-Nasseri S, Rabb H, Gritsch S, Suva ML, Cahan P, Zhou R, Jie C, Donner T, Hamad ARA. A public BCR present in a unique dual-receptor-expressing lymphocyte from Type 1 diabetes patients encodes a potent T cell autoantigen. Cell. 2019 May 30;177(6):1583-99.
Key words: DEs, autoantigen, duel expressers, insulin mimotope, islet autoantigen, type 1
https://www.sciencedirect.com/science/article/pii/
S0092867419305057?via%3Dihub
PMID: 31150624

2. Arnold CAA, Kherad Pezhouh M, Lam-Himlin D, Pittman M, VandenBussche C, Voltaggio L. 90Y-TheraSpheres®: The New Look of Yttrium-90. Am J Surg Pathol. 2019 May;43(5):688-94.
Key words: hepatic malignancy, radiation therapy, Yttrium-90
https://insights.ovid.com/pubmed?pmid=30720534
No PMID available

3. Birkness J, Lam-Himlin D, Byrnes K, Wood L, Voltaggio L. The inverted appendix - a potentially problematic diagnosis: clinicopathologic analysis of 21 cases. Histopathology. 2019 May;74(6):853-60.
Key words: appendiceal intussusception, inverted appendix,low-grade appendiceal mucinous neoplasm, neuroendocrine tumour, traditional serrated adenoma
https://onlinelibrary.wiley.com/doi/full/10.1111/his.13824
PMID: 30667075

4. Clark DJ, Hu Y, Schnaubelt M, Fu Y, Ponce S, Chen S-Y, Zhou Y, Shah P, Zhang H. Simple tip-based sample processing method for urinary proteomic analysis. Analytical Chemistry. 2019 May 7; 91(9):5517-33.
Key words: proteomics, automated sample processing, urine proteome, mass spectrometry
https://pubs.acs.org/doi/10.1021/acs.analchem.8b05234
PMID: 30924636

5. Faisal FA, Tosoian JJ, Han M, Macura KJ, Pavlovich CP, Lotan TL. Clinical, pathologic, and oncologic findings of radical prostatectomy patients with extraprostatic extension diagnosed on pre-operative prostate biopsy. J Urol. 2019 May;201(5):937-42.
Key words: biopsy, needle, neoplasm staging, prostatectomy, prostatic neoplasms, surgical pathology
https://www.auajournals.org/doi/10.1016/j.juro.2018.10.023
PMID: 30414957

6. Guarner J, Schroeder LF, Amukele TK. Three approaches to creating an essential diagnostics list. Am J Clin Pathol. 2019 May;151(5):443-45.
Key words: EDL, essential diagnostics, List
https://academic.oup.com/ajcp/article/151/5/443/5248364
PMID:30551217

7. Haddaway K, Bloch EM, Tobian AAR, Frank SM, Sikorski R, Cho BC, Zheng G, Jani J, Lokhandwala PM, Lawrence CE, Blagg L, Ness PM, Kickler TS, Gehrie EA. Hemostatic properties of cold?stored whole blood leukoreduced using a platelet?sparing versus a non-platelet?sparing filter. Transfusion. 2019 May;59(5):1809-17.
Key words: transfusion Practices, blood component preparations, hemostasis, platelets
https://onlinelibrary.wiley.com/doi/full/10.1111/trf.15159
PMID: 30741432

8. Kopp JB, Rosenberg AZ. One actor, many roles: histopathologies associated with APOL1 genetic variants. Adv Anat Pathol. 2019 May;26(3):215-9. (Review)
Key words: histopathology, apolipoprotein L1, glomerular disease
https://insights.ovid.com/pubmed?pmid=30624253
PMID: 30624253

9. Kaur HB, Lu J, Guedes LB, Maldonado L, Reitz L, Barber JR, De Marzo AM, Tomlins SA, Sfanos KS, Eisenberger M, Schaeffer EM, Joshu CE, Lotan TL. TP53 missense mutation is associated with increased tumor-infiltrating T-cells in primary prostate Cancer. Hum Pathol. 2019 May;87:95-102.
Key words: CD3, CD8, FOXP3, Prostatic adenocarcinoma, T cells, TP53, Tumor-infiltrating lymphocytes
https://www.sciencedirect.com/science/article/pii/S0046817719300231?via%3Dihub
PMID: 30851334

10. Maleki Z, Baloch Z, Lu R, Shafique K, Song SJ, Viswanathan K, Rao RA, Lefler H, Fatima A, Wiles A, Jo VY, Wang H, Fadda G, Powers CN, Ali SZ, Pantanowitz L, Siddiqui MT, Nayar R, Klijanienko J, Barkan GA, Krane JF, Rossi ED, Callegari F, Kholová I, Bongiovanni M, Faquin WC, Pusztaszeri MP. Application of the Milan System for Reporting Submandibular Gland Cytopathology: An international, multi?institutional study. Cancer Cytopathol. 2019 May;127(5):306-15.
Key words: Milan System for Reporting Salivary Gland Cytopathology (MRSSGC), atypia of undetermined significance (AUS), benign neoplasm, fine-needle aspiration (FNA), malignant
https://onlinelibrary.wiley.com/doi/full/10.1002/cncy.22135
PMID: 31050186

11. Mocci E, Debeljak M, Klein AP, Eshleman JR. A new fast phasing method based on haplotype subtraction. J Mol Diagn. 2019 May;21(3):427-36.
Key words: alleles, genotypes, phasing, algorithms heterozygotes
https://www.sciencedirect.com/science/article/pii/S152515781830360X?via%3Dihub
PMID: 30872187

12. Omidian Z, Ahmed R, Giwa A, Donner T, Hamad ARA. IL-17 and limits of success. Cell Immunol. 2019 May;339:33-40.
Key words: autoimmune diseases, clinical trials, IL-17, immunotherapy, interleukin-17
https://www.sciencedirect.com/science/article/pii/S0008874918303174?via%3Dihub
PMID: 30765202

13. Patel EU, White JL, Bloch EM, Grabowski MK, Gehrie EA, Lokhandwala PM, Brunker PAR, Goel R, Shaz BH, Ness PM, Tobian AAR. Association of blood donation with iron deficiency among adolescent and adult females in the United States: a nationally representative study. Transfusion. 2019 May;59:1723-33.
Key words: blood, blood donation, iron deficiency, adolescent
https://onlinelibrary.wiley.com/doi/epdf/10.1111/trf.15179
PMID:30779173

14. Sfanos KS, Joshu CE. IBD as a risk factor for prostate cancer: what is the link? Nat Rev Urol. 2019 May;16(5):271-2.
Key words: IBD, prostate cancer, risk factors
https://www.nature.com/articles/s41585-019-0157-7
PMID:30742047

15. Skaro M, Nanda N, Gauthier C, Felsenstein M, Jiang Z, Qiu M, Shindo K, Yu J, Hutchings D, Javed AA, Beckman R, He J, Wolfgang CL, Thompson E, Hruban RH, Klein AP, Goggins M, Wood LD, Roberts NJ. Prevalence of germline mutations associated with cancer risk in patients with intraductal papillary mucinous neoplasms. Gastroenterology. 2019 May;156(6):1905-13.
Key words: cancer, genetics, pancreas, predisposition, germline genetics

https://www.sciencedirect.com/science/article/pii/
S0016508519303531?via%3Dihub

PMID: 30716324

1. Bell DT, Bergman Y, Kazmi AQ, Lewis S, Tama PD, Simner PJ. A novel phenotypic method to screen for plasmid-mediated colistin resistance among enterobacteriales. J Clin Microbiol. 2019 Apr;57:e00040-19.
Key words: colistin, mcr, phenotypic method, plasmid-mediated colistin resistance
https://jcm.asm.org/content/57/5/e00040-19
PMID: 30842232

2. Eshleman SH, Laeyendecker O, Kammers K, Chen A, Sivay MV, Kottapalli S, Sie BM, Yuan T, Monaco DR, Mohan D, Wansley D, Kula T, Morrison C, Elledge SJ, Brookmeyer R, Ruczinski I, Larman HB. Comprehensive profiling of HIV antibody evolution. Cell Rep. 2019 Apr 30;27(5):1422-33.e4.
Key words: antibody response to HIV, antibody profiling, HIV incidence, antibody biomarker serosignature
https://www.sciencedirect.com/science/article/pii/S221112471930436X?via%3Dihub
PMID: 31042470

3. Guarner J, Schroeder LF, Amukele TK. Three approaches to creating an essential diagnostics list. Am J Clin Pathol. 2019 Apr 2;151(5):443-5.
Key words: EDL, essential diagnostics, list
https://academic.oup.com/ajcp/article/151/5/443/5248364
PMID: 30551217

4. Kacker S, Bloch EM, Ness PM, Gehrie EA, Marshall CE, Lokhandwala PM, Tobian AAR. Financial impact of alternative approaches to reduce bacterial contamination of platelet transfusions. Transfusion. 2019 Apr;59(4):1291-9.
https://onlinelibrary.wiley.com/doi/full/10.1111/trf.15139
PMID: 30623459

5. Li QK, Pavlovich CP, Zhang H, Kinsinger CR, Chan DW. Challenges and opportunities in the proteomic characterization of clear cell renal cell carcinoma (ccRCC): A critical step towards the personalized care of renal cancers. (review) Semin Cancer Biol. 2019 Apr;55:8-15.
Key words: Clear cell renal cell carcinoma (ccRCC), clinical application, personalized medicine, protein profiling, proteomics

https://www.sciencedirect.com/science/article/pii/S1044579X18300397?via%3Dihub
PMID: 30055950

6. c A. Evaluation and reporting of biopsies from the columnar-lined esophagus and gastro-esophageal junction (GEJ). Ann Diagn Pathol. 2019 April;39:111-7.
Key words: Barrett's Esophagus, columnar lined esophagus, intestinal metaplasia of the gastric cardia, Prague classification
https://www.sciencedirect.com/science/article/pii/S1092913419300498?via%3Dihub
PMID: 30055950

7. Natsumeda M, Liu Y, Nakata S, Miyahara H, Hanaford A, Ahsan S, Stearns D, Skuli N, Kahlert UD, Raabe EH, Rodriguez F, Eberhart CG. Inhibition of enhancer of zest homologue 2 is a potential therapeutic target for high-MYC medulloblastoma. Neuropathology. 2019 Apr;39(2):71-77.
Key words: EZH2, EZH2 inhibitor, H3K27me3, MYC, medulloblastoma
https://onlinelibrary.wiley.com/doi/full/10.1111/neup.12534
PMID: 30632221

8. Nguyen T, Kirsch BJ, Asaka R, Nabi K, Quinones A, Tan J, Antonio MJ, Camelo F, Li T, Nguyen S, Hoang G, Nguyen K, Udupa S, Sazeides C, Shen YA, Elgogary A, Reyes J, Zhao L, Kleensang A, Chaichana KL, Hartung T, Betenbaugh MJ7, Marie SK, Jung JG, Wang TL, Gabrielson E, Le A. Uncovering the role of N-acetyl-aspartyl-glutamate as a glutamate reservoir in cancer. Cell Rep. 2019 Apr 9;27(2):491-501.e6.
Key words: N-acetyl-aspartyl-glutamate (NAAG), glutamate carboxypeptidase II (GCPII), glutaminase inhibitor, glutamate deprivation, glutamate reservoir, stable isotoperesolved metabolomics
https://www.sciencedirect.com/science/article/pii/
S2211124719303523?via%3Dihub

PMID:30970252

9. Patel EU, Mehta SH, Boon DE, Quinn TC, Thomas DL, Tobian AAR. Limited coverage of hepatitis C virus testing in the United States, 2013-2017. Clin Infect Dis. 2019 Apr 8;68(8):1402-5.
Key words: HCV, National Health Interview Survey, baby boomer, hepatitis, screening
https://academic.oup.com/cid/article/68/8/1402/5098442
PMID: 30239645

10. Trabzonlu L, Kulac I, Zheng Q, Hicks JL, Haffner MC, Nelson WG, Sfanos KS, Ertunc O, Lotan TL, Heaphy CM, Meeker AK, Yegnasubramanian S, De Marzo AM. Molecular pathology of high-grade prostatic intraepithelial neoplasia: challenges and opportunities. Cold Spring Harb Perspect Med. 2019 Apr 1;9(4). pii: a030403.
Key words: molecular pathology, prostatic intraepithelial neoplasia
http://perspectivesinmedicine.cshlp.org/content/9/4/a030403.long
PMID:30082453

11. Wang Q, Chung CY, Yang W, Yang G, Chough S, Chen Y, Yin B, Bhattacharya R, Hu Y, Saeui CT, Yarema KJ, Betenbaugh MJ, Zhang H. Combining butyrated ManNAc with glycoengineered CHO cells improves EPO glycan quality and production. Biotechnol J. 2019 Apr;14(4):e1800186.
Key words: EPO; butyrated ManNAc; glycoengineering; intact glycopeptide analysis, sialylation
https://onlinelibrary.wiley.com/doi/full/10.1002/biot.201800186
PMID:30221828

12. Wang C, Höti N, Lih TM, Sokoll LJ, Zhang R, Zhang Z, Zhang H, Chan DW. Development of a glycoproteomic strategy to detect more aggressive prostate cancer using lectin-immunoassays for serum fucosylated PSA. Clin Proteomics. 2019 Apr 6;16:13. doi: 10.1186/s12014-019-9234-4. eCollection 2019.
Key words: fucosylated PSA, glycoproteomic, lectin-immunoassays, prostate cancer
https://clinicalproteomicsjournal.biomedcentral.com/articles/
10.1186/s12014-019-9234-4
PMID: 30996714

13. Zheng G, Tseng LH, Haley L, Ibrahim J, Bynum J, Xian R, Gocke CD, Eshleman JR, Lin MT. Clinical validation of coexisting driver mutations in colorectal cancers. Hum Pathol. 2019 Apr;86:12-20.
Key words: BRAF, coexisting mutation, colorectal cancer, KRAS, NRAS, PIK3CA
https://www.sciencedirect.com/science/article/pii/S0046817718304660?via%3Dihub
PMID: 30481508

1. Antonarakis ES, Shaukat F, Isaacsson Velho P, Kaur H, Shenderov E, Pardoll DM, Lotan TL. Clinical features and therapeutic outcomes in men with advanced prostate cancer and DNA mismatch repair gene mutations. Eur Urol. 2019 Mar;75(3):378-82.
Key words: MSH2, MSH6, microsatellite instability, mismatch repair, prostate cancer
https://www.sciencedirect.com/science/article/pii/S0302283818307504?via%3Dihub
PMID: 30337059

2. Asnaghi L, White DT, Key N, Choi J, Mahale A, Alkatan H, Edward DP, Elkhamary SM, Al-Mesfer S, Maktabi A, Hurtado CG, Lee GY, Carcaboso AM, Mumm JS, Safieh LA, Eberhart CG. ACVR1C/SMAD2 signaling promotes invasion and growth in retinoblastoma. Oncogene. 2019 Mar;38:2056-75.
Key words: Retinoblastoma, TGF-?, gene expression, ACVR1C/SMAD2 pathway
https://www.nature.com/articles/s41388-018-0543-2
PMID: 30401983

3. Bracamonte-Baran W, Chen G, Hou X, Talor MV, Choi HS, Davogustto G, Taegtmeyer H, Sung J, Hackam DJ, Nauen D, ?iháková D. Non-cytotoxic cardiac innate lymphoid cells are a resident and quiescent type 2-commited population. Front Immunol. 2019 Mar;10:634.
Key words: innate lymphoid cells, IL-33, heart, myocarditis, myocardial infarction, fibroblasts
https://www.frontiersin.org/articles/10.3389/fimmu.2019.00634/full
PMID:30984196

4. Di Dalmazi G, Chalan P, Caturegli P. MYMD-1, a Novel Immunometabolic Regulator, Ameliorates Autoimmune Thyroiditis via Suppression of Th1 Responses and TNF-? Release. J Immunol. 2019 Mar;202(5):1350-62.
Key words: thyroiditis, MYMD-1, Hashimoto thyroiditis, autoimmunity, smoking
http://www.jimmunol.org/content/202/5/1350.long
PMID: 30674573

5. Foster P, Sokoll L, Li J, Gerstenblith G, Fishman EK, Kickler T, Chen S, Tai H, Lai H, Lai S. Circulating levels of cardiac troponin T are associated with coronary noncalcified plaque burden in HIV-infected adults: a pilot study. Int J STD AIDS. 2019 Mar;30(3):223-30.
Key words: HIV infection, noncalcified plaque volume, cardiac troponin T, chronic kidney disease, injection
https://journals.sagepub.com/doi/full/10.1177/0956462418800873?url_ver=Z39.88-2003&rfr_id=ori%3Arid%3Acrossref.org&rfr_dat=cr_pub%3Dpubmed
PMID: 30381028

6. Kuboki Y, Fischer CG, Beleva Guthrie V, Huang W, Yu J, Chianchiano P, Hosoda W, Zhang H, Zheng L, Shao X, Thompson ED, Waters K, Poling J, He J, Weiss MJ, Wolfgang CL, Goggins MG, Hruban RH, Roberts NJ, Karchin R, Wood LD. Single-cell sequencing defines genetic heterogeneity in pancreatic cancer precursor lesions. J Pathol. 2019 Mar;247(3):347-56.
Key words: genetic heterogeneity, intraductal papillary mucinous neoplasm, pancreatic cancer precursor lesion, single-cell sequencing, somatic mutation
https://onlinelibrary.wiley.com/doi/full/10.1002/path.5194
PMID: 30430578

7. Lakis NS, Lombardo KA, Mangray S, Netto GJ, Salles D, Matoso A. INSL3 Expression in Leydig Cell Hyperplasia and Leydig Cell Tumors. Appl Immunohistochem Mol Morphol. 2019 Mar;27(3):203-9.
Key words: Leydig cell tumor, Leydig cell hyperplasia, sex cord stromal tumor, INSL3, testis
https://journals.lww.com/appliedimmunohist/fulltext/2019/03000/INSL3_
Expression_in_Leydig_Cell_Hyperplasia_and.6.aspx
PMID: 29084059

8 Matoso A, Idrees MT, Rodriguez FJ, Ibrahim J, Perrino CM, Ulbright TM, Epstein JI. Neuroglial differentiation and neoplasms in testicular germ cell tumors lack immunohistochemical evidence of alterations characteristic of their CNS counterparts: A Study of 13 Cases. Am J Surg Pathol. 2019 Mar;43(3):422-31.
Key words: germ cell tumor, teratoma, neuroglia, glioma
https://journals.lww.com/ajsp/fulltext/2019/03000/Neuroglial_
Differentiation_and_Neoplasms_in.15.aspx
PMID:30557172

9. Rodriguez EF, Judd Fite J, Chowsilpa S, Maleki Z. Insulinoma-associated protein 1 immunostaining on cytology specimens: an institutional experience. Hum Pathol. 2019 March;85:128-35.
Key words: cytology, INSM1, insulinoma-associated protein 1, neuroendocrine markers, small cell carcinoma
https://www.sciencedirect.com/science/article/pii/S0046817718304350?via%3Dihub
PMID:30502379

10. Rooper LM, Sharma R, Gocke CD, Belchis DA. The Utility of NKX2.2 and TLE1 Immunohistochemistry in the Differentiation of Ewing Sarcoma and Synovial Sarcoma. Appl Immunohistochem Mol Morphol. 2019 Mar;27(3):174-9.
Key words: Ewing sarcoma, synovial sarcoma, immunohistochemistry, molecular testing
https://journals.lww.com/appliedimmunohist/fulltext/2019/03000/The_Utility_of_
NKX2_2_and_TLE1.2.aspx

11. Sono T, Meyers CA, Miller D, Ding C, McCarthy EF, James AW. Overlapping features of rapidly progressive osteoarthrosis and Charcot arthropathy. J Orthop 2019 Mar 12;16(3):260-4.
Key words: Osteoarthritis, arthropathy, Charcot joint, joint disease, RPOA
https://www.sciencedirect.com/science/article/pii/S0972978X18303660?via%3Dihub

12. Steranka JP, Tang Z, Grivainis M, Huang CRL, Payer LM, Rego FOR, Miller TLA, Galante PAF, Ramaswami S, Heguy A, Fenyo D, Boeke JD, Burns KH. Transposon insertion profiling by sequencing (TIPseq) for mapping LINE-1 insertions in the human genome. Mobile DNA. 2019 Mar;10:8 (open access)
Key words: LINE-1, targeted PCR, next generation sequencing
https://mobilednajournal.biomedcentral.com/articles/10.1186/s13100-019-0148-5
PMID:30899333

13. Sugimoto K, Ito T, Woo J, Tully E, Sato K, Orita H, Brock MV, Gabrielson E. Prognostic impact of phosphorylated discoidin domain receptor-1 in esophageal cancer. J Surg Res. 2019 Mar;235:479-86.
Key words: Discoid domain receptor-1, esophageal squamous cell carcinoma, phosphorylation, prognosis, receptor tyrosine kinase
https://www.sciencedirect.com/science/article/pii/S0022480418307625?via%3Dihub
PMID: 30691832

14. Vizcaino MA, Palsgrove DN, Yuan M, Giannini C, Cabrera-Aldana EE, Pallavajjala A, Burger PC, Rodriguez FJ. Granular cell astrocytoma: an aggressive IDH-wildtype diffuse glioma with molecular genetic features of primary glioblastoma. Brain Pathol. 2019 Mar;29(2):193-204.
Key words: TERT, GBM, granular cell, IDH-wildtype, astrocytoma, diffuse glioma, glioblastoma
https://onlinelibrary.wiley.com/doi/full/10.1111/bpa.12657
PMID:30222900

15. Wang C, Rosner GL, Roden RBS. A Bayesian design for phase I cancer therapeutic vaccine trials. Stat Med. 2019 Mar 30;38(7):1170-89.
Key words: Bayesian, HPV, phase I, cancer therapeutic vaccine, clinical trial
https://onlinelibrary.wiley.com/doi/full/10.1002/sim.8021
PMID: 30368868

1. Allison DB, Rooper LM, Mustafa S, Maleki Z, Wakely PE Jr, Ali SZ. Cytopathologic characteristics of HPV-related small cell carcinoma of the oropharynx. Cancer Cytopathol. 2019 Feb;127(1):35-43.
Key words: cytopathology, head and neck cancer, human papillomavirus, small cell carcinoma, squamous cell carcinoma
https://onlinelibrary.wiley.com/doi/full/10.1002/cncy.22078
PMID: 30468701

2. De Marchi F, Haley L, Fryer H, Ibrahim J, Beierl K, Zheng G, Gocke CD, Eshleman JR, Belchis D, Illei P, Lin MT. Clinical validation of coexisting activating mutations within EGFR, mitogen-activated protein kinase, and phosphatidylinositol 3-kinase pathways in lung cancers. Arch Pathol Lab Med. 2019 Feb;143(2):174-82.
Key words: coexisting mutations, KRAS, EGFR, lung cancers, quality assessment
https://www.archivesofpathology.org/doi/10.5858/arpa.2017-0495-OA?url_ver=Z39.88-2003&rfr_id=ori:rid:crossref.org&rfr_dat=cr_pub%3dpubmed

3. Goel R, Patel EU, White JL, Chappidi M, Ness PM, Cushing MM, Takemoto C, Shaz BH, Frank SM, Tobian AAR. Factors associated with red blood cell, platelet, and plasma transfusions among inpatient hospitalizations: a nationally representative study in the United States. Transfusion. 2019 Feb;59(2):500-7.
Key words: transfusion, platelet, hospitalization
https://onlinelibrary.wiley.com/doi/full/10.1111/trf.15088
PMID:30548491

4. Homsy J, King R, Bannink F, Namukwaya Z, Vittinghof E, Amone A, Ojok F, Rukundo G, Amama S, Etima J, Matovu J, Weissglas F, Ojom L, Atim P, Darbes L, Byamugisha J, Rutherford G, Katabira E, Fowler MG; PRIMAL Study Team. Primary HIV prevention in pregnant and lactating Ugandan women: A randomized trial. PLoS One. 2019 Feb 25;14(2):e0212119.
Key words: Uganda, HIV, pregnancy
https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0212119#ack
PMID:30802277

5. Rooper LM, Jo VY, Antonescu CR, Nose V, Westra WH, Seethala RR, Bishop JA. Adamantinoma-like Ewing sarcoma of the salivary glands: a newly recognized mimicker of basaloid salivary carcinomas. Am J Surg Pathol. 2019 Feb;43(2):187-94.
Key words: Ewing sarcoma, salivary glands, salivary carcinoma
https://journals.lww.com/ajsp/fulltext/2019/02000/Adamantinoma_like_
Ewing_Sarcoma_of_the_Salivary.5.aspx
PMID:30285997

6. Sadasivam M, Noel S, Lee SA, Gong J, Allaf ME, Pierorazio P, Rabb H, Hamad ARA. Activation and proliferation of PD-1+ kidney double-negative T cells is dependent on nonclassical MHC proteins and IL-2. J Am Soc Nephrol. 2019 Feb;30(2):277-92. (cover article)
Key words: T cells, immunology, ischemia-reperfusion

https://jasn.asnjournals.org/content/30/2/277.long
PMID: 30622155

7. Shaukat I, Kern JJ, Höti N, Zhang H, Li J, Zheng G, Askin F, Gabrielson E3 Li QK. Detection of RAS and RAS-associated alterations in primary lung adenocarcinomas. A correlation between molecular findings and tumor characteristics. Hum Pathol. 2019 Feb;84:18-25.
Key words: EGFR, KRAS, lung adenocarcinomas (ADC), NRAS
https://www.sciencedirect.com/science/article/pii/S0046817718303629?via%3Dihub
PMID: 30266251

8. Yu SH, Maynard JP, Vaghasia AM, De Marzo AM, Drake CG, Sfanos KS. A role for paracrine interleukin-6 signaling in the tumor microenvironment in prostate tumor growth. Prostate. 2019 Feb;79(2):215-22.
Key words: inflammation, interleukin 6, microenvironment, prostate cancer, tumor growth
https://onlinelibrary.wiley.com/doi/full/10.1002/pros.23726
PMID: 30345534

1. Akshintala VS, Talukdar R, Singh VK, Goggins M. The gut microbiome in pancreatic disease. Clin Gastroenterol Hepatol. 2019 Jan;17(2):290-5.
Key words: Dysbiosis; Intratumoral Bacteria; Microbiome; Pancreatic Cancer; Pancreatitis; Probiotics
https://www.sciencedirect.com/science/article/pii/S1542356518308838?
via%3Dihub

PMID:30144522

2. Bell WR, Meeker AK, Rizzo A, Rajpara S, Rosenthal IM, Flores Bellver M, Aparicio Domingo S, Zhong X, Barber JR, Joshu CE, Canto-Soler MV, Eberhart CG, Heaphy CM. A unique telomere DNA expansion phenotype in human retinal rod photoreceptors associated with aging and disease.Brain Pathology. 2019 Jan;29(1):45-52.
Key words: diabetic retinopathy, glaucoma; retina, rod photoreceptors, telomeres
https://onlinelibrary.wiley.com/doi/full/10.1111/bpa.12618
PMID: 29668072

3. Fogel JM, Sandfort T, Zhang Y, Guo X, Clarke W, Breaud A, Cummings V, Hamilton EL, Ogendo A, Kayange N, Panchia R, Dominguez K, Chen YQ, Eshleman SH. Accuracy of self-reported HIV status among African men and transgender women who have sex with men who were screened for participation in a research study: HPTN 075. AIDS Behav. 2019 Jan;23(1):289-94.
Key words: HIV, self-report, MSM, transgender women, Africa, ART
https://link.springer.com/article/10.1007%2Fs10461-018-2231-1
PMID: 30051192

4. Gelwan E, Zhang ML, Allison DB, Cowan ML, DeLuca J, Fite JJ, Wangsiricharoen S, Williamson B, Zhou A, VandenBussche CJ. Variability among observers utilizing the CellSolutions BestCyte Cell Sorter imaging system for the assessment of urinary tract cytology specimens. J Am Soc Cytopathol. 2019 Jan 1;8(1):18-26.
Key words: cytology, bladder cancer, digital imaging, urine, urothelial carcinoma
https://www.sciencedirect.com/science/article/pii/S2213294518300693
No PMID available

5. Hong SM, Noë M, Hruban CA, Thompson ED, Wood LD, Hruban RH. A "clearer" view of pancreatic pathology: a review of tissue clearing and advanced microscopy techniques. Adv Anat Pathol. 2019 Jan;26(1):31-9. (REVIEW)
Key words: pathologic lesions, pancreas, microscopy
https://insights.ovid.com/pubmed?pmid=30256228
PMID: 30256228

6. Isser A, Schneck JP. High-affinity T cell receptors for adoptive cell transfer. J Clin Invest 2019 Jan 2;129(1):69-71.
Key words: T cell receptors, adoptive cell transfer
https://www.jci.org/articles/view/125471
PMID: 30530992

7. Leiby DA, O'Brien SF, Wendel S, Nguyen ML, Delage G, Devare SG, Hardiman A, Nakhasi HL, Sauleda S, Bloch EM; WPTTID Subgroup on Parasites. International survey on the impact of parasitic infections: frequency of transmission and current mitigation strategies. Vox Sang. 2019 Jan;114(1):17-27.
Key words: Babesia ; Leishmania ; Plasmodium ; Trypanosoma cruzi ; public health; transfusion transmission
https://onlinelibrary.wiley.com/doi/full/10.1111/vox.12727
PMID: 30523642

8. Matoso A, Epstein JI. Defining clinically significant prostate cancer on the basis of pathological findings. Review. Histopathology. 2019 Jan;74(1):135-45.
Key words: active surveillance, prostate cancer, significant cancer
https://onlinelibrary.wiley.com/doi/full/10.1111/his.13712
PMID: 30565298

9. Payer LM, Steranka JP, Ardeljan D, Walker J, Fitzgerald KC, Calabresi PA, Cooper TA, Burns KH. Alu insertion variants alter mRNA splicing. Nucleic Acids Res. 2019 Jan 10;47(1):421-31.
Key words: mRNA splicing, Alu retrotransposons

https://academic.oup.com/nar/article/47/1/421/5168819
PMID: 30418605

10. Rodriguez FJ, Brosnan-Cashman JA, Allen SJ, Vizcaino MA, Giannini C, Camelo-Piragua S, Webb M, Matsushita M, Wadhwani N, Tabbarah A, Hamideh D, Jiang L, Chen L, Arvanitis LD, Alnajar HH, Barber JR, Rodríguez-Velasco A, Orr B, Heaphy CM. Alternative lengthening of telomeres, ATRX loss and H3-K27M mutations in histologically defined pilocytic astrocytoma with anaplasia. Brain Pathol. 2019 Jan;29(1):126-40.
Key words: ATRX, H3-K27M, alternative lengthening of telomeres, glioma, pilocytic astrocytoma
https://onlinelibrary.wiley.com/doi/full/10.1111/bpa.12646
PMID: 30192422

11. Simner PJ, Bergman Y, Trejo M, Roberts AA, Marayan R, Tekle T, Campeau S, Kazmi A, Bell D, Lewis S, Tamma PD, Humphries R, Hindler JA. Two-Site evaluation of the colistin broth disk elution test to determine colistin in vitro activity against gram-negative bacilli. J Clin Microbiol. 2019 Jan;57(2):e01163-18.
Key words: colistin broth disk elution, antimicrobial susceptibility testing, colistin, method
https://jcm.asm.org/content/jcm/57/2/e01163-18.full.pdf
PMID: 30282791

12. Tamma PD, Fan Y, Bergman Y, Pertea G, Kazmi AQ, Lewis S, Carroll KC, Schatz MC, Timp W, Simner PJ. Applying rapid whole-genome sequencing to predict phenotypic antimicrobial susceptibility testing results among carbapenem-resistant Klebsiella pneumoniae clinical isolates. Antimicrob Agents Chemother. 2018 Dec 21;63(1). pii: e01923-18. doi: 10.1128/AAC.01923-18. Print 2019 Jan.
Key words: Illumina; WGS; antibiotic resistance; antimicrobial resistance
https://aac.asm.org/content/63/1/e01923-18.long
PMID:30373801

13. Wang Y, Xu J, Chang L, Meyers CA, Zhang L, Broderick K, Lee M, Peault B, James AW. Relative contributions of adipose-resident CD146+ pericytes and CD34+ adventitial progenitor cells in bone tissue engineering. NPJ Regen Med. 2019 Jan 7;4:1. doi: 10.1038/s41536-018-0063-2. eCollection 2019.
Key words: Mesenchymal stem cell, perivascular stem cell, bone tissue, bone repair, bone regeneration
https://www.nature.com/articles/s41536-018-0063-2
PMID: 30622740

14. Weimer A, Tagny CT, Tapko JB, Gouws C, Tobian AAR, Ness PM, Bloch EM. Blood transfusion safety in sub-Saharan Africa: A literature review of changes and challenges in the 21st century. Transfusion. 2019 Jan;59(1):412-27.
https://onlinelibrary.wiley.com/doi/full/10.1111/trf.14949
PMID: 30615810

15. Zhou AG, Salles DC, Samarska IV, Epstein JI. How are Gleason Scores categorized in the current literature: an analysis and comparison of articles published in 2016-2017. Eur Urol. 2019 Jan;75(1):25-31.
Key words: Gleason score, prostate cancer grading, grade groups
https://www.sciencedirect.com/science/article/pii/S0302283818305438?via%3Dihub
PMID: 30057131

1. Cloutier J, Thompson ED, Cimino-Mathews A, Rooper LM, Matoso A, Argani P. Metastatic breast cancer simulating well-differentiated neuroendocrine neoplasms of visceral organs. Hum Pathol. 2018 Dec;82:76-86.
Key words: breast carcinoma, metastastatic, endocrine
https://www.sciencedirect.com/science/article/pii/S0046817718302697?via%3Dihub
PMID: 30031098

2. Gehrie EA. Atypical bacterial growth within units of platelets challenges transfusion medicine dogma. J Clin Microbiol. 2018 Nov 27;56(12). pii: e01363-18. doi: 10.1128/JCM.01363-18.
Key words: bacterial growth, platelets, transfusion medicine
https://jcm.asm.org/content/56/12/e01363-18.long
No PMID available

3. Hickey JW, Isser AY, Vicente FP, Warner SB, Mao HQ, Schneck JP. Efficient magnetic enrichment of antigen-specific T cells by engineering particle properties. Biomaterials. 2018 Dec;187:105-16.
Key words: artificial antigen-presenting cells, immunotherapy, magnetic enrichment, nanoparticles, T cells
https://www.sciencedirect.com/science/article/pii/S0142961218306665?via%3Dihub
PMID: 30312851

4. Jaiswal AK, Sadasivam M, Hamad ARA. Unexpected alliance between syndecan-1 and innate-like T cells to protect host from autoimmune effects of interleukin-17. World J Diabetes. 2018 Dec 15;9(12):220-5.
Key words: interleukin-17, natural killer T 17 cells, natural killer T cell, syndecan-1
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6304294/

5. Montgomery E, Arnold CA, Lam-Himlin D, Salimian K, Waters K. Some observations on Barrett esophagus and associated dysplasia. Ann Diagn Pathol. 2018 Dec;37:75-82.
Key words: Barrett esophagus, dysplasia
https://www.sciencedirect.com/science/article/pii/S1092913418303101?via%3Dihub
PMID: 30312881

6. Palsgrove DN, Brosnan-Cashman JA, Giannini C, Raghunathan A, Jentoft M, Bettegowda C, Gokden M, Lin D, Yuan M, Lin MT, Heaphy CM, Rodriguez FJ. Subependymal giant cell astrocytoma-like astrocytoma: a neoplasm with a distinct phenotype and frequent neurofibromatosis type-1-association. Mod Pathol. 2018 Dec;31(12):1787-800.
Key words: astrocytoma, neoplasm, neurofibromatosis
https://www.nature.com/articles/s41379-018-0103-x
PMID: 29973652

7. Paulk A, Giannico G, Epstein JI. PIN-like (Ductal) adenocarcinoma of the prostate. Am J Surg Pathol 2018 Dec;42(12):1693-1700.
Key words: ductal adenocarcinoma, Gleason grade, prostatic adenocarcinoma
https://journals.lww.com/ajsp/fulltext/2018/12000/PIN_like__
Ductal__Adenocarcinoma_of_the_Prostate.13.aspx
PMID: 30138215

8. Pisanic TR 2nd, Cope LM, Lin SF, Yen TT, Athamanolap P, Asaka R, Nakayama K, Fader AN, Wang TH, Shih IM, Wang TL. Methylomic analysis of ovarian cancers identifies tumor-specific alterations readily detectable in early precursor lesions. Clin Cancer Res. 2018 Dec 15;24(24):6536-47.
Key words: methylation, ovarian cancer, endometrioid cancer, early detection
http://clincancerres.aacrjournals.org/content/24/24/6536.long
PMID:30108103

8. Qiu J, Peng S, Ma Y, Yang A, Farmer E, Cheng MA, Roden RBS, Wu TC, Chang YN, Hung CF. Epithelial boost enhances antigen expression by vaccinia virus for the generation of potent CD8+ T cell-mediated antitumor immunity following DNA priming vaccination. Virology. 2018 Dec;525:205-15.
Key words: PMID: Human papillomavirus; Pre-clinical model; TA-HPV; Therapeutic HPV vaccine; pNGVL4a-Sig/E7(detox)/HSP70
https://www.sciencedirect.com/science/article/pii/S0042682218302988?via%3Dihub
PMID: 30296681

9. Samaan S, Quddus MR, Matoso A. "Man in Istanbul" lesions of the urinary tract (known entities in an unusual context): melanoma, carcinoid tumors, epithelioid angiosarcoma. Surg Pathol Clin. 2018 Dec;11(4):825-36. Review
Key words: bladder, carcinoid tumor, epithelioid angiosarcoma, kidney, melanoma
https://www.sciencedirect.com/science/article/pii/S1875918118300473?via%3Dihub
PMID: 30447844

10. Waters KM, Salimian KJ, Voltaggio L, Montgomery EA. Refined criteria for separating low-grade dysplasia and nondysplastic Barrett esophagus reduce equivocal diagnoses and improve prediction of patient outcome: A 10-Year review. Am J Surg Pathol. 2018 Dec;42(12):1723-9.
Key words: dysplasia, Barrett esophagus, patient outcome
https://journals.lww.com/ajsp/fulltext/2018/12000/Refined_Criteria_
for_Separating_Low_grade.17.aspx

PMID: 30234520

1. Argani P, Reuter VE, Kapur P, Brown JE, Sung YS, Zhang L, Williamson R, Francis G, Sommerville S, Swanson D, Dickson BC, Antonescu CR. Novel MEIS1-NCOA2 gene fusions define a distinct primitive spindle cell sarcoma of the kidney. Am J Surg Pathol. 2018 Nov;42(11):1562-70.
Key words: Kidney, sarcoma, translocation
https://journals.lww.com/ajsp/fulltext/2018/11000/Novel_
MEIS1_NCOA2_Gene_Fusions_Define_a_Distinct.17.aspx
PMID: 30179902

2. Asnaghi L, White DT, Key N, Choi J, Mahale A, Alkatan H, Edward DP, Elkhamary SM, Al-Mesfer S, Maktabi A, Hurtado CG, Lee GY, Carcaboso AM, Mumm JS, Safieh LA, Eberhart CG. ACVR1C/SMAD2 signaling promotes invasion and growth in retinoblastoma. Oncogene. 2018 Nov 6. doi: 10.1038/s41388-018-0543-2.
Key words: retinoblastoma, optic nerve, signaling
https://www.nature.com/articles/s41388-018-0543-2
PMID: 30401983

3. Hutchings D, Waters KM, Weiss MJ, Wolfgang CL, Makary MA, He J, Cameron JL, Wood LD, Hruban RH. Cancerization of the pancreatic ducts: demonstration of a common and under-recognized process using immunolabeling of paired duct lesions and invasive pancreatic ductal adenocarcinoma for p3 and Smad4 expression. Am J Surg Pathol. 2018 Nov;42(11):1556-61.
Key words: pancreatic ducts, duct lesions, pancreatic adenocarcinoma
https://journals.lww.com/ajsp/fulltext/2018/11000/Cancerization
_of_the_Pancreatic_Ducts_.16.aspx
PMID: 30212393

4. Kageyama Y, Saito A, Pletnikova O, Rudow GL, Irie Y, An Y, Murakami K, Irie K, Resnick SM, Fowler DR, Martin LJ, Troncoso JC. Amyloid ? toxic conformer has dynamic localization in the human inferior parietal cortex before amyloid ? plaques form. Sci Rep. 2018 Nov 15;8(1):16895.
Key words: glymphatic system, microvesicle, aging, astrocytes, Alzheimer's disease, lysosome
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6237870/

5. Khararjian A, Mathew P, Choudhary A, Baras A. Cost effectiveness of intraoperative gross examination in colorectal resections: a retrospective review of 200 consecutive cases. Arch Pathol Lab Med. 2018 Nov;142(11):1403-6.
Key words: cost effectiveness, colorectal resection, retrospective review
http://www.archivesofpathology.org/doi/10.5858/arpa.2017-0201-OA?url_ver=Z39.88-2003&rfr_id=ori:rid:crossref.org&rfr_dat=cr_pub%3dpubmed
PMID: 29902068

6. Li G, Adams E, Eshleman JR, Eberhart CG. No BRAF V600E mutation identified in 28 periocular pyogenic granuloma. Ophthalmic Plast Reconstr Surg. 2018 Nov/Dec;34(6):525-7.
Key words: mutation, periocular pyogenic granuloma
http://www.archivesofpathology.org/doi/10.5858/arpa.2017-0201-OA?url_ver=Z39.88-2003&rfr_id=ori:rid:crossref.org&rfr_dat=cr_pub%3dpubmed
PMID: 29406329

7. Montgomery EA. Diagnostic histochemistry of soft tissue lesions. Semin Diagn Pathol. 2018 Nov;35(6):399-406.
Key words: histochemistry, mucin stains, periodic acid-Schiff stains, soft tissue lessions, trichrome stains
https://www.clinicalkey.com/#!/content/playContent/1-s2.0-S0740257018300959?returnurl=
https:%2F%2Flinkinghub.elsevier.com%2Fretrieve%2Fpii%2FS0740257018300959%
3Fshowall%3Dtrue&referrer=https:%2F%2Fwww.ncbi.nlm.nih.gov%2F
No PMID available

8. Murdock T, Orr B, Allen S, Ibrahim J, Sharma R, Ronnett BM, Rodriguez GJ. Central Nervous System-type Neuroepithelial tumors and tumor-like proliferations developing in the gynecologic tract and pelvis : clinicopathologic analysis of 23 Cases. Am J Surg Pathol 2018 Nov;42(11):1429-44.
Key words: central nervous system tumors, central type primitive neuroectodermal tumor, gynecologic tract, pelvis
https://journals.lww.com/ajsp/fulltext/2018/11000/Central_Nervous_
System_type_Neuroepithelial_Tumors.2.aspx

PMID:30074494

9. Patel H, Gupta M, Tosoian, JJ, Carter HB, Partin AW, Epstein JI. Subtyping the risk of intermediate-risk prostate cancer for active surveillance based on adverse pathology at radical prostatectomy. J Urol. 2018 Nov;200(5):1068-74.
Key words: active surveillance, prostate adenocarcinoma, Gleason grade
https://www.sciencedirect.com/science/article/pii/S0022534718429850?via%3Dihub
PMID: 29673946

10. Pletnikova O, Kageyama Y, Rudow G, LaClair KD, Albert M, Crain BJ, Tian J, Fowler D, Troncoso JC. The spectrum of preclinical Alzheimer's disease pathology and its modulation by ApoE genotype. Neurobiol Aging. 2018 Nov;71:72-80.
Key words: dementia, A? amyloid, PyroGlu-A?, tau, neurofibrillary tangles
https://www.sciencedirect.com/science/article/pii/S0197458018302586?via%3Dihub
PMID: 30099348

11. Tamma PD, Simner PJ. Phenotypic detection of carbapenemase-producing organisms from clinical isolates. J Clin Microbiol. 2018 Nov;56(11):e01140-18.
Key words: phenotype, carbapenemase, clinical isolates
https://jcm.asm.org/content/56/11/e01140-18
PMID: 30158194

12. Tregnago AC, Epstein JI. Skene's glands adenocarcinoma: a series of 4 cases. Am J Surg Pathol. 2018 Nov;42(11):1513-21.
Key words: skenes gland, periurethral gland, prostate adenocarcinoma
https://journals.lww.com/ajsp/fulltext/2018/11000/Skene_s_
Glands_Adenocarcinoma__A_Series_of_4_Cases.11.aspx

PMID: 29901570

13. Yang JM, Bhattacharya S, West-Foyle H, Hung CH, Wu TC, Iglesias PA, Huang CH. Integrating chemical and mechanical signals through dynamic coupling between cellular protrusions and pulsed ERK activation. Nat Commun. 2018 Nov 07; 9(1):article # 4673.
Key words: cancer, Ras-ERK signaling, single cell imaging, synthetic biology, optogenetics
https://www.nature.com/articles/s41467-018-07150-9
PMID: 30405112

14. Yang W, Ao M, Hu Y, Li QK, Zhang H. Mapping the O-glycoproteome using site-specific extraction of O-linked glycopeptides (EXoO). Mol Syst Biol 2018 Nov 20;14(11):e8486.
Key words: O?GalNAc; O?linked; glycoproteomics; glycosylation; site?specific
http://msb.embopress.org/content/14/11/e8486.long
PMID: 30459171

15. Zhang Y, Sivay MV, Hudelson SE, Clarke W, Breaud A, Wang J, Piwowar-Manning E, Agyei Y, Fogel JM, Hamilton EL, Selin A, MacPhail C, Kahn K, Gómez-Olivé FX, Hughes JP, Pettifor A, Eshleman SH. Antiretroviral drug use and HIV drug resistance among young women in rural South Africa: HPTN 068. J Acquir Immune Defic Syndr 2018 Nov 1;79(3):315-22.
Key words: HIV, antiretroviral, resistance, South Africa
https://journals.lww.com/jaids/fulltext/2018/11010/
Antiretroviral_Drug_Use_and_HIV_Drug_Resistance.5.aspx

PMID:29985265

1. Alharbi AM, De Marzo AM, Hicks JL, Lotan TL, Epstein JI. Prostatic adenocarcinoma with focal pleomorphic giant cell features: a series of 30 cases. Am J Surg Pathol 2018 Oct;42(10):1286-96.
Key words: prostate adenocarcinoma, prostate carcinoma, PSA, nkx3.1
https://journals.lww.com/ajsp/fulltext/2018/10000/
Prostatic_Adenocarcinoma_With_Focal_Pleomorphic.2.aspx
PMID: 29944471

2. Allison DB, VandenBussche CJ, Rooper LM, Wakely PE Jr, Rossi ED, Faquin WC, Ali SZ. Nodular fasciitis of the parotid gland: A challenging diagnosis on FNA. Cancer Cytopathol 2018 Oct;126(10):872-80.
Key words: fasciitis, parotid gland, fine needle aspiration
https://onlinelibrary.wiley.com/doi/full/10.1002/cncy.22049
PMID: 30311731

3. Argani P. A Molecular marker for eosinophilic solid and cystic renal cell carcinoma. Eur Urol. 2018 Oct;74(4):487-8.
Key words: renal, tuberous sclerosis, carcinoma
https://www.sciencedirect.com/science/article/pii/S0302283818304688?via%3Dihub

4. Chang L, Zhang L, Xu J, Meyers CA, Li Z, Yan N, Zou E, James AW. Lineage-specific Wnt reporter elucidates mesenchymal Wnt signaling during bone repair. Am J Pathol 2018 Oct;188(10):2155-63. (short communication)
Key words: skeletal development, bone repair, Wnt signaling
https://www.sciencedirect.com/science/article/pii/S0002944018300579?via%3Dihub
PMID: 30031726

5. Debeljak M, Noë M, Riel SL, Haley LM, Norris AL, Anderson DA, Adams EM, Suenaga M, Beierl KF, Lin MT, Goggins MG, Gocke CD, Eshleman JR. Validation strategy for ultrasensitive mutation detection. Mol Diagn Ther. 2018 Oct;22(5):603-11.
Key words: mutation detection, validation strategy
https://link.springer.com/article/10.1007%2Fs40291-018-0350-z
PMID: 29974360

6. Illei PB, Wong W, Wu N, Chu L, Gupta R, Schulze K, Gubens MA. ALK testing trends and patterns among community practices in the United States. JCO Precision Oncology 2018 :2, 1-11. DOI: 10.1200/PO.18.00159
Key words: ALK testing, community practices
http://ascopubs.org/doi/full/10.1200/PO.18.00159
No PMID available

7. Meyer CA, Xu J, Asatrian G, Ding C, Shen J, Broderick K, Ting K, Soo C, Peault B, James AW. WISP-1 drives bone formation at the expense of fat formation in human perivascular stem cells. Scientific Reports. 2018 Oct; 8:15618.
Key words: bone formation, fat formation, human perivascular stem cells, WISP-1
https://rdcu.be/bbnH5

8. Nix JS, Haffner MC, Ahsan S, Hicks J, De Marzo AM, Blakeley J, Raabe EH, Rodriguez FJ. Malignant peripheral nerve sheath tumors show decreased global DNA methylation. J Neuropathol Exp Neurol. 2018 Oct 1;77(10):958-63.
Key words: 5-hydroxymethylcytosine, 5-methylcytosine, epigenetics, malignant nerve sheath tumors, methylation
https://academic.oup.com/jnen/article/77/10/958/5087966
PMID: 30169729

9. Osmani L, Askin F, Gabrielson E, Li QK. Current WHO guidelines and the critical role of immunohistochemical markers in the subclassification of non-small cell lung carcinoma (NSCLC): Moving from targeted therapy to immunotherapy. Semin Cancer Biol. 2018 Oct;52(Pt 1):103-9.
Key words: EGFR mutations; Fine needle aspiration (FNA) biopsy; Non-small cell lung carcinoma (NSCLC); PD-L1 immunotherapy; Targeted therapy
https://www.sciencedirect.com/science/article/pii/S1044579X17300974?via%3Dihub
PMID: 29183778

10. Rock C, Anderson M, Lewis S, Scheeler V, Nowakowski E, Hsu YJ, Milstone AM, Carroll KC, Maragakis LL, Simner PJ; CDC Prevention Epicenters Program. Comparison of nylon-flocked swab and cellulose sponge methods for carbapenem-resistant Enterobacteriaceae and gram-negative organism recovery from high-touch surfaces in patient rooms. Infect Control Hosp Epidemiol. 2018 Oct;39(10):1257-61.
Key words: nylon-flocked swab, cellulose sponge, carbapenem-resistant Enterobacteriaceae, patient rooms
https://www.cambridge.org/core/journals/infection-
control-and-hospital-epidemiology/article/comparison-
of-nylonflocked-swab-and-cellulose-sponge-methods-for-
carbapenemresistant-enterobacteriaceae-and-gramnegative-
organism-recovery-from-hightouch-surfaces-in-patient-rooms/
32F9DEA9CBB8293340D9E7CF2F117EF3

PMID: 30152307

11. Sun Y, Argani P, Tickoo SK, Epstein JI. Acquired cystic disease-associated renal cell carcinoma (ACKD-RCC)-like cysts. Am J Surg Pathol. 2018 Oct;42(10):1396-1401.
Key words: renal cell carcinoma, renal cysts, end stage renal disease
https://journals.lww.com/ajsp/Abstract/2018/10000/
Acquired_Cystic_Disease_associated_Renal_Cell.14.aspx
PMID: 30001236

12. Zhang L, Chang L, Xu J, Meyers CA, Yan N, Zou E, James AW. Lineage specific Wnt reporter elucidates mesenchymal Wnt signaling during bone repair. Am J Pathol. 2018 Oct;188(10):2155-63.
Key words: Wnt signaling, bone repair, mesenchyma
https://www.sciencedirect.com/science/article/pii/
S0002944018300579?via%3Dihub

PMID: 30031726

1. Brosnan-Cashman JA, Yuan M, Graham MK, Rizzo AJ, Myers KM, Davis C, Zhang R, Esopi DM, Raabe EH, Eberhart CG, Heaphy CM, Meeker AK. ATRX loss induces multiple hallmarks of the alternative lengthening of telomeres (ALT) phenotype in human glioma cell lines in a cell line-specific manner. PLoS One. 2018 Sep 18;13(9):e0204159. eCollection 2018.
Key words: cancer, telomeres, alternative lengthening of telomeres (ALT), glioma, CRISPR
https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0204159
PMID: 30226859

2. Bynum JP, Zachary A, Ness PM, Luo X, Bagnasco S, King KE, Segev DL, Orandi BJ, Warren DS, Fuller A, Uglik K, Montgomery R, Tobian AAR. Transfusion of leukoreduced blood products and risk of antibody-mediated rejection of renal allografts. Transfusion. 2018;58:1951-7.
Key words: blood products, renal allografts, transfusion
https://onlinelibrary.wiley.com/doi/epdf/10.1111/trf.14800
PMID: 30171817

3. Canto MI, Almario JA, Schulick RD, Yeo CJ, Klein A, Blackford A, Shin EJ, Sanyal A, Yenokyan G, Lennon AM, Kamel I, Fishman EK, Wolfgang C, Weiss M, Hruban RH, Goggins MG. Risk of neoplastic progression in high-risk individuals undergoing long-term surveillance for pancreatic cancer. Gastroenterology. 2018 Sep;155(3):740-51.
Key words: early detection, familial pancreatic cancer, IPMN, panIN-3
https://www.sciencedirect.com/science/article/pii/S0016508518345682
?via%3Dihub
PMID: 29803839

4. Cheng MA, Farmer E, Huang C, Lin J, Hung CF, Wu TC. Therapeutic DNA vaccines for human papillomavirus and associated diseases. Hum Gene Ther. 2018 Sep;29(9):971-96. (review)
Key words: therapeutic DNA vaccine, human papillomavirus
https://www.liebertpub.com/doi/full/10.1089/hum.2017.197
PMID: 29316817

5. Felsenstein M, Noë M, Masica DL, Hosoda W, Chianchiano P, Fischer CG, Lionheart G, Brosens LAA, Pea A, Yu J, Gemenetzis G, Groot VP, Makary MA, He J, Weiss MJ, Cameron JL, Wolfgang CL, Hruban RH, Roberts NJ, Karchin R, Goggins MG, Wood LD. IPMNs with co-occurring invasive cancers: neighbours but not always relatives. Gut 2018 Sep;67(9):1652-62.
Key words: cancer genetics, carcinogenesis, molecular genetics, mutations, pancreatic cancer
https://gut.bmj.com/content/67/9/1652.long
PMID: 29500184

6. Goel R, Patel EU, Cushing MM, Frank SM, Ness PM, Takemoto CM, Vasovic LV, Sheth S, Nellis ME, Shaz B, Tobian AAR. Association of perioperative red blood cell transfusions with venous thromboembolism in a North American registry. JAMA Surg 2018 Sep 1;153(9):826-33.
Key words: red blood cell transfusions, venous thromboembolism
https://jamanetwork.com/journals/jamasurgery/fullarticle/2683886
PMID: 29898202

7. Hassan O, Matoso A. Clinical significance of subtypes of Gleason pattern 4 prostate cancer. Transl Androl Urol. 2018 Sep;7(Suppl 4):S477-S483.
Key words: prostate cancer, cribriform, glomeruloid, grade group, Gleason grade
http://tau.amegroups.com/article/view/18596/20796
PMID: 30363452

8. Jaiswal AK, Sadasivam M, Archer NK, Miller RJ, Dillen CA, Ravipati A, Park PW, Chakravarti S, Miller LS, Hamad ARA. Syndecan-1 regulates psoriasiform dermatitis by controlling homeostasis of IL-17-Producing ?? T cells. J Immunol. 2018 Sep 15;201(6):1651-61.
Key words: sdc1, T??17 cells, Interleukin-17, thymus
http://www.jimmunol.org/content/201/6/1651.long
PMID:30045969

9. Jaquenod De Giusti C, Roman B, Das S. The influence of MicroRNAs on mitochondrial calcium. Front Physiol. 2018 Sep 21;9:1291. eCollection 2018.
Key words: MitomiR, heart failure, miRNA, microRNA, mitochondria, mitochondrial calcium
https://www.frontiersin.org/articles/10.3389/fphys.2018.01291/full
PMID: 30298016

10. Palsgrove DN, Li Y, Pratilas CA, Lin MT, Pallavajjalla A, Gocke C, De Marzo AM, Matoso A, Netto GJ, Epstein JI, Argani P. Eosinophilic solid and cystic (ESC) renal cell carcinomas harbor TSC mutations: molecular analysis supports an expanding clinicopathologic spectrum. Am J Surg Pathol. 2018 Sep;42(9):1166-81.
Key words: kidney, TSC, mutation
https://journals.lww.com/ajsp/Abstract/2018/09000/
Eosinophilic_Solid_and_Cystic__ESC__Renal_Cell.5.aspx

PMID: 29975249

11. Simner PJ, Miller HB, Breitwieser FP, Pinilla Monsalve G, Pardo CA, Salzberg SL, Sears CL, Thomas DL, Eberhart CG, Carroll KC. Development and optimization of metagenomic next-generation sequencing methods for cerebrospinal fluid diagnostics. J Clin Microbiol. 2018 Aug 27;56(9). pii: e00472-18. doi: 10.1128/JCM.00472-18. Print 2018 Sep.
Key words: CSF, metagenomics, next-generation sequencing
https://jcm.asm.org/content/56/9/e00472-18.long
PMID: 29976594

12. Sokoll LJ, Mangold L, Mohr P, Dua R, Partin AW. High "phi"ve. J Appl Lab Med. 2018 Sep 3:333-5. (Letter)
Key words: prostate health index, prostate cancer, prostate-specific antigen
http://jalm.aaccjnls.org/content/3/2/333
No PMID available

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October 2021 articles:
Essential Information for Human Subjects Research Teams Related to COVID-19
Third Thursdays with the ICTR Lecture Series - Community-Engaged Research Consultation Service
Coronavirus Research Billing Notices and FAQ
Managing Investigational Product Returns from Research Participants
Update to Organization Policy on Registration of Clinical Trials
Changes in HSR Recertification
Update on Insurance and Research Participant Financial Responsibility Information Sheet: Signature No Longer Required
Change in JHM IRB Review Fees for Commercially-Funded Studies
Data and Safety Monitoring Board Training Manual Now Available
Good Clinical Practice (GCP) Fundamentals: Understanding and Applying GCP to Human Subject Research
Fee Schedule Adjustment for Hospital Services Charged to Clinical Trial Budgets
Changes to NIH-funded Human Subjects Research
Free Resources for Longitudinal Clinical Research Studies
JHM IRB Reliance Requests
Sharing Partnership for Innovative Research in Translation
Johns Hopkins Institute for Clinical and Translational Research
Johns Hopkins Clinical Research Network
 
Visit Animal Care and Use Committee Website
Current Classes
"Interinstitutional Assurance" Agreement
Health, Safety, and Environment (HSE) presents: Safety in Research Updates
Register, Revisit, Review, Renew Safety Protocols and Procedures
Johns Hopkins 2021-22 Flu Campaign
Johns Hopkins Occupational Health Services
Dual Use Research of Concern (DURC) policies
COVID-19 Funding Opportunities
The Fisher Center Discovery Program
Michael J. Fox Foundation (MJFF) Challenge
Updated Guidance from NIH on COVID-19 Flexibilities for Applicants and Recipients
COVID-19 and Research Updates
Point of Contact for NIH Loan Repayment Program
JHU SOM Update on NIH Policy on Foreign Involvement
Disclosure of Payments from Foreign Educational Institutions and Government Agencies
Institutional Letter of Support Required for Institutional Training Grant Applications
NIH Policy on Foreign Component Involvement
NIH Policy: Foreign Components Added to a Grant to a Domestic or Foreign Organization

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