November 2019
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Biological Chemistry Archives

1. Zhu L, Liao SE, Fukunaga R. Drosophila Regnase-1 RNase is required for mRNA and miRNA profile remodelling during larva-to-adult metamorphosis. RNA Biol. 2019 Oct;16(10):1386-1400.
Key words: RNase, Regnase, mRNA, miRNA, Drosophila
https://www.ncbi.nlm.nih.gov/pubmed/31195914

1. Camacho E, Vij R, Chrissian C, Prados-Rosales R, Gil D, O'Meally RN, Cordero RJB, Cole RN, McCaffery JM, Stark RE and Casadevall A. The structural unit of melanin in the cell wall of the fungal pathogen cryptococcus neoformans. J Biol Chem. 2019 July 5; 294(27):10471-89.
Key words: basic unit, biopolymer, cell wall, cryo-electron microscopy, fungi, melanin, melanogenesis, melanosomes, solid-state NMR, supramolecular structure
https://www.ncbi.nlm.nih.gov/pubmed/31118223

2. Li S, Cha SW, Heffner K, Hizal DB, Bowen MA, Chaerkady R, Cole RN, Tejwani V, Kaushik P, Henry M, Meleady P, Sharfstein ST, Betenbaugh MJ, Bafna V and Lewis NE. Proteogenomic annotation of Chinese hamsters reveals extensive novel translation events and endogenous retroviral elements. J Proteome Res. 2019 June 7; 18(6):2433-45.
Key words: Chinese hamster, endogenous retrovirus, genome annotation, proteogenomics
https://www.ncbi.nlm.nih.gov/pubmed/31020842

3. Steppan J, Wang H, Bergman Y, Rauer MJ, Tan S, Jandu S, Nandakumar K, Barreto-Ortiz S, Cole RN, Boronina TN, Zhu W, Halushka MK, An SS, Berkowitz DE and Santhanam L. Lysyl oxidase-like 2 depletion is protective in age-associated vascular stiffening. Am J Physiol Heart Circ Physiol. 2019 July 1;317(1):H49-H59.
Key words: aging, lysyl oxidase-like 2, pulse-wave velocity, vascular stiffness
https://www.ncbi.nlm.nih.gov/pubmed/31002285

1. Barber CN, Raben DM. Lipid metabolism crosstalk in the brain: glia and neurons. Frontiers in Cellular Neuroscience. 2019 May 21;13:212.
Key words: Lipids, Glia, CNS neurons
https://www.frontiersin.org/articles/10.3389/fncel.2019.00212/full
PMID: 31164804

2. Camacho E, Vij R, Chrissian C, Prados-Rosales R, Gil D, O'Meally RN, Cordero RJB, Cole RN, McCaffery JM, Stark RE, Casadevall A. The structural unit of melanin in the cell wall of the fungal pathogen cryptococcus neoformans. J Biol Chem. 2019 May 22. pii: jbc.RA119.008684. doi: 10.1074/jbc.RA119.008684. [Epub ahead of print]
Key words: basic unit, biopolymer, cell wall, cryo-electron microscopy, fungi, melanin, melanogenesis, melanosomes, solid state NMR, supramolecular structure
https://www.ncbi.nlm.nih.gov/pubmed/31118223

3. Carter TY, Gadwala S, Chougule AB, Bui APN, Sanders AC, Chaerkady R, Cormier N, Cole RN, Thomas JH. Actomyosin contraction during cellularization is regulated in part by src64 control of actin 5c protein levels. Genesis. 2019 Jun;57(6):e23297.
Key words: Actin 5C, Src64, actin, cellularization, oxidative stress response, proteomics
https://www.ncbi.nlm.nih.gov/pubmed/30974046

4. Dresselhaus EC, Meffert MK. Cellular Specificity of NF-?B Function in the Nervous System. Front Immunol. 2019 May 9;10:1043. doi: 10.3389/fimmu.2019.01043
Key words: NF-?B; Neurons; Plasticity; central nervous system (CNS); gene expression; glia; synapse; transcription
https://www.ncbi.nlm.nih.gov/pubmed/31143184

5. Li S, Cha SW, Heffner K, Hizal DB, Bowen MA, Chaerkady R, Cole RN, Tejwani V, Kaushik P, Henry M, Meleady P, Sharfstein ST, Betenbaugh MJ, Bafna V and Lewis NE. Proteogenomic annotation of chinese hamsters reveals extensive novel translation events and endogenous retroviral elements. J Proteome Res. 2019 Jun 7;18(6):2433-2445. doi: 10.1021/acs.jproteome.8b00935.
Key words: Chinese hamster, endogenous retrovirus, genome annotation, proteogenomics
https://www.ncbi.nlm.nih.gov/pubmed/31020842

6. Liao SE, Kandasamy SK, Zhu L, Fukunaga R. DEAD-box RNA helicase Belle post-transcriptionally promotes gene expression in an ATPase activity-dependent manner. RNA. 2019 Jul;25(7):825-839. doi: 10.1261/rna.070268.
Key words: RNA, helicase, ATPase, DEAD-box, Drosophila
https://www.ncbi.nlm.nih.gov/pubmed/30979781

7. Steppan J, Wang H, Rauer M, Tan S, Jandu S, Nandakumar K, Barreto Ortiz S, Cole RN, Boronina TN, Zhu W, Halushka MK, An SS, Berkowitz DE and Santhanam L. Lysyl oxidase-like 2 (loxl2) depletion is protective in age-associated vascular stiffening. Am J Physiol Heart Circ Physiol. 2019 Jul 1;317(1):H49-H59. doi: 10.1152/ajpheart.00670.2018.
Key words: Vascular stiffness, aging, lysyl oxidase like 2, pulse wave velocity
https://www.ncbi.nlm.nih.gov/pubmed/31002285

8. Zhu L, Liao SE, Ai Y, Fukunaga R. RNA methyltransferase BCDIN3D is crucial for female fertility and miRNA and mRNA profiles in Drosophila ovaries. PLoS One. 2019 May 30;14(5):e0217603.
Key words: RNA, methyltransferase, mRNA, miRNA, Drosophila
https://www.ncbi.nlm.nih.gov/pubmed/31145769

1. Dresselhaus EC, Meffert MK. Cellular specificity of NF-kb function in the nervous system. Front Immunol. 2019 May 9;10:1043. doi: 10.3389/fimmu.2019.01043. eCollection 2019.
Key words: NF-?B; Neurons; Plasticity; central nervous system (CNS); gene expression; glia; synapse; transcription
https://www.ncbi.nlm.nih.gov/pubmed/31143184

2. Howell M, Aliashkevich A, Sundararajan K, Daniel JJ, Lariviere PJ, Goley ED, Cava F, Brown PJB. Agrobacterium tumefaciens divisome proteins regulate the transition from polar growth to cell division. Mol. Microbiol. 2019. Apr;111(4):1074-1092.
Key words: bacterial cell division, divisome, FtsZ, polar growth
https://www.ncbi.nlm.nih.gov/pubmed/30693575

3. Lariviere PJ, Mahone CR, Santiago-Collazo G, Howell M, Daitch AK, Zeinert R, Chien P, Brown PJB, Goley ED. An essential regulator of bacterial division links FtsZ to cell wall synthase activation. Curr. Biol. 2019. May 6;29(9):1460-1470.
Key words: bacterial cell division, FtsZ, peptidoglycan, Caulobacter, cell wall
https://www.ncbi.nlm.nih.gov/pubmed/31031115

4. Sack GH. Pathophysiology of Amyloid Fibril Formation. In: Amyloidosis March 2019. DOI:10.5772/intechopen.81965,

1. Leung DYM, Calatroni A, Zaramela LS, LeBeau PK, Dyjack N, Brar K, David G, Johnson K, Leung S, Ramirez-Gama M, Liang B, Rios C, Montgomery MT, Richers BN, Hall CF, Norquest KA, Jung J, Bronova I, Kreimer S, Conover Talbot C, Jr., Crumrine D, Cole RN, Elias P, Zengler K, Seibold MA, Berdyshev E and Goleva E. The nonlesional skin surface distinguishes atopic dermatitis with food allergy as a unique endotype. Sci Transl Med. 2019 Feb 20;11(480).
Key words: non-lesional skin, atopic dermatitis, food allergy, stratum corneum biomarkers, immature skin barrier, Type 2 immune activation
https://www.ncbi.nlm.nih.gov/pubmed/30787169

2. Tharakan R, Kreimer S, Ubaida-Mohien C, Lavoie J, Olexiouk V, Menschaert G, Ingolia NT, Cole RN, Ishizuka K, Sawa A and Nucifora LG. A methodology for discovering novel brain-relevant peptides: Combination of ribosome profiling and peptidomics. Neurosci Res. 2019 Mar 9. pii: S0168-0102(18)30722-3.
Key words: brain peptides, mass spectrometry, peptidomics, ribosome profiling
https://www.ncbi.nlm.nih.gov/pubmed/30862443

1. Lee SE, Schulze K, Stewart CP, Cole RN, Wu LS, Eroglu A, Yager JD, Groopman J, Christian P and West KP, Jr. Plasma proteome correlates of lipid and lipoprotein: Biomarkers of metabolic diversity and inflammation in children of rural nepal. J Lipid Res. 2019 Jan; 60(1):149-60.
Key words: high density lipoprotein-cholesterol, low density lipoprotein-cholesterol, plasma proteomics, triglycerides
https://www.ncbi.nlm.nih.gov/pubmed/30473544


2. Leung DYM, Calatroni A, Zaramela LS, LeBeau PK, Dyjack N, Brar K, David G, Johnson K, Leung S, Ramirez-Gama M, Liang B, Rios C, Montgomery MT, Richers BN, Hall CF, Norquest KA, Jung J, Bronova I, Kreimer S, Conover Talbot C, Jr., Crumrine D, Cole RN, Elias P, Zengler K, Seibold MA, Berdyshev E and Goleva E. The nonlesional skin surface distinguishes atopic dermatitis with food allergy as a unique endotype. Sci Transl Med. 2019 Feb 20;11(480). pii: eaav2685.
Key words: non-lesional skin, atopic dermatitis, food allergy, stratum corneum biomarkers, immature skin barrier, Type 2 immune activation
https://www.ncbi.nlm.nih.gov/pubmed/30787169

1. Lee SE, Schulze K, Stewart CP, Cole RN, Wu LS, Eroglu A, Yager JD, Groopman J, Christian P, West KP, Jr. Plasma proteome correlates of lipid and lipoprotein: Biomarkers of metabolic diversity and inflammation in children of rural nepal. J Lipid Res. 2019 Jan; 60(1):149-60.
Key words: high density lipoprotein-cholesterol, low density lipoprotein-cholesterol, plasma proteomics, triglycerides
https://www.ncbi.nlm.nih.gov/pubmed/30473544

2. Liu X, Abraham JM, Cheng Y, Wang Z, Wang Z, Zhang G, Ashktorab H, Smoot DT, Cole RN, Boronina TN, DeVine LR, Talbot CC, Jr., Liu Z, Meltzer SJ. Synthetic circular RNA functions as a mir-21 sponge to suppress gastric carcinoma cell proliferation. Mol Ther Nucleic Acids. 2018 Dec 7;13:312-21.
Key words: gastric carcinoma, microRNA loss-of-function, microRNA sponge, molecular therapy, synthetic circular RNA
https://www.ncbi.nlm.nih.gov/pubmed/30326427

3. Ma Q, Gabelli SB, Raben DM. Diacylglycerol kinases: Relationship to other lipid kinases. Adv Biol Regul. 2019 Jan;71:104-110. doi: 10.1016/j.jbior.2018.09.014.
Key words: Diacylglycerol kinase, Structure-Function, Lipid Kinases
https://www.ncbi.nlm.nih.gov/pubmed/30348515

1. Chen S, Luperchio TR, Wong X, Doan EB, Byrd AT, Roy Choudhury K, Reddy KL, Krangel MS. A lamina-associated domain border governs nuclear lamina interactions, transcription, and recombination of the Tcrb locus. Cell Rep. 2018 Nov 13;25(7):1729-1740.e6.
Key words: CTCF; DamID; LAD border; T cell receptor ?; Tcrb; V(D)J recombination; lamina-associated domain; nuclear lamina
https://www.ncbi.nlm.nih.gov/pubmed/30428344

2. Luperchio TR, Sauria MEG, Hoskins VE, Xianrong W, DeBoy E, Gaillard M-C, Tsang P, Pekrun K, Ach RA, Yamada A, Taylor J, Reddy KL. The repressive genome compartment is established early in the cell cycle before forming the lamina associated domains. bioRxiv. 2018 November; 481598. doi: http://dx.doi.org/10.1101/481598.
Key words: repressive genome, cell cycle, lamina
https://www.biorxiv.org/content/biorxiv/early/2018/11/29/481598.full.pdf

1. Schaffer TB, Smith JE, Cook EK, Phan T, Margolis SS. PKC? inhibits neuronal dendritic spine development through dual phosphorylation of Ephexin5. Cell Rep. 2018 Nov 27;25(9):2470-2483.
Key words: hippocampus, development, dendritic spines, PKC epsilon, Ephexin5, phosphorylation
https://www.ncbi.nlm.nih.gov/pubmed/30485813

1. Bedsaul JR, Carter NM, Deibel KE, Hutcherson SM, Jones TA, Wang Z, Yang C, Yang Y, Pomerantz JL. Mechanisms of regulated and dysregulated CARD11 signaling in adaptive immunity and disease. Frontiers In Immunology. 2018; 9:2105, doi: 10.3389/fimmu.2018.02105.
Key words: Bcl10; CARD11; MALT1; lymphoma; primary immunodeficiency
https://www.ncbi.nlm.nih.gov/pubmed/30283447

2. Chen S, Luperchio TR, Wong X, Doan EB, Byrd AT, Roy Choudhury K, Reddy KL, Krangel MS. A lamina-associated domain border governs nuclear lamina interactions, transcription, and recombination of the Tcrb locus. Cell Reports. 2018; 25(7):1729-40.e6.
Key words: CTCF; DamID; LAD border; T cell receptor ?; Tcrb; V(D)J recombination; lamina-associated domain; nuclear lamina
https://www.ncbi.nlm.nih.gov/pubmed/30428344

3. Liu X, Abraham JM, Cheng Y, Wang Z, Wang Z, Zhang G, Ashktorab H, Smoot DT, Cole RN, Boronina TN, DeVine LR, Talbot CC, Jr., Liu Z, Meltzer SJ. Synthetic circular rna functions as a mir-21 sponge to suppress gastric carcinoma cell proliferation. Mol Ther Nucleic Acids. 2018;13:312-21.
Key words: gastric carcinoma, microRNA loss-of-function, microRNA sponge, molecular therapy, synthetic circular RNA
https://www.ncbi.nlm.nih.gov/pubmed/30326427

1. Bedsaul JR, Carter NM, Deibel KE, Hutcherson SM, Jones TA, Wang Z, Yang C, Yang Y, Pomerantz JL. Mechanisms of regulated and dysregulated CARD11 signaling in adaptive immunity and disease. Front Immunol. 2018 Sept; 9:2105, doi: 10.3389/fimmu.2018.02105.
Key words: Bcl10; CARD11; MALT1; lymphoma; primary immunodeficiency
https://www.ncbi.nlm.nih.gov/pubmed/30283447

2. Rhoads SN, Monahan ZT, Yee DS, Leung AY, Newcombe CG, O'Meally RN, Cole RN and Shewmaker FP. The prionlike domain of fus is multiphosphorylated following DNA damage without altering nuclear localization. Mol Biol Cell. 2018 Aug;29:1786-97.
Key words: amyloid related neurological disorders, phase transition assay, modifications of unstructured protein domains
https://www.ncbi.nlm.nih.gov/pubmed/29897835

3. Singh V, Yang J, Yin J, Cole R, Tse M, Berman DE, Small SA, Petsko G and Donowitz M. Cholera toxin inhibits snx27-retromer-mediated delivery of cargo proteins to the plasma membrane. J Cell Sci. 2018 Aug 17;131(16).
Key words: Apical trafficking, Cholera toxin, Early endosomes, Exocytosis, Nhe3, Pdz, Retromer, Snx27, Secretory diarrhea
https://www.ncbi.nlm.nih.gov/pubmed/30030371

4. Zhu , Kandasamy SK, Liao SE, Fukunaga R. LOTUS domain protein MARF1 binds CCR4-NOT deadenylase complex to post-transcriptionally regulate gene expression in oocytes. Nat Commun. 2018 Oct 2;9(1):4031.
Key words: RNA-binding protein; oocyte, poly-A tail, deadenylase, LOTUS domain
https://www.ncbi.nlm.nih.gov/pubmed/30279526

1. Sack GH Jr. Serum amyloid A - a review. Molecular Med. 2018 Aug 30;24(1):46.
Key words: SAA; Serum amyloid A; acute phase response (APR); amyloidosis; apolipoprotein; arthritis; atherosclerosis; cytokine; inflammation; lipopolysaccharide (LPS); liver; myeloid-derived suppressor cells (MDSC)
https://www.ncbi.nlm.nih.gov/pubmed/30165816

1. Liao SE, Ai Y, Fukunaga R. An RNA-binding protein Blanks plays important roles in defining small RNA and mRNA profiles in Drosophila testes. Heliyon. 2018 Jul 25;4(7):e00706.
Key words. RNA-binding proteins, testis, mRNA, miRNA, Drosophila
https://www.ncbi.nlm.nih.gov/pubmed/30094376

1. Dadi H, Jones TA, Merico D, Sharfe N, Ovadia A, Schejter Y, Reid B, Sun M, Vong L, Atkinson A, Lavi S, Pomerantz JL, Roifman CM. Combined immunodeficiency and atopy caused by a dominant negative mutation in CARD11. J Allergy Clin Immunol. 2018. 141 (5): 1818-1830.
Key words: combined immunodeficiency, atopy, CARD11, NF-kappaB signaling
https://www.ncbi.nlm.nih.gov/pubmed/28826773

2. Oldach LM, Gorshkov K, Mills WT 4th, Zhang J, Meffert MK. A biosensor for MAPK-dependent Lin28 signaling. Mol Biol Cell. 2018 May 15;29(10):1157-1167. doi: 10.1091/mbc.E17-08-0500.
Key words: Biosensor, MAPK pathway, microRNA, RNA-binding protein, Lin28
https://www.ncbi.nlm.nih.gov/pubmed/29540527

3. Ramachandran KV, Fu JM, Schaffer TB, Na CH, Delannoy M, Margolis SS. Activity-dependent degradation of the nascentome by the neuronal membrane proteasome. Mol Cell. 2018 Jul 5;71(1):169-177.e6
Key words: immediate early gene; membrane proteasome; nascent polypeptide; neuronal activity; proteasome; ribosome
http://www.ncbi.nlm.nih.gov/pubmed/29979964

4. Rhoads SN, Monahan ZT, Yee DS, Leung AY, Newcombe CG, O'Meally RN, Cole RN, Shewmaker FP. The prion-like domain of fus is multiphosphorylated following DNA damage without altering nuclear localization. Mol Biol Cell. 2018 Jun 13:mbcE17120735.
Key words: amyloid related neurological disorders, phase transition assay, modifications of unstructured protein domains
https://www.ncbi.nlm.nih.gov/pubmed/29897835

1. Dadi H, Jones TA, Merico D, Sharfe N, Ovadia A, Schejter Y, Reid B, Sun M, Vong L, Atkinson A, Lavi S, Pomerantz JL#, Roifman CM#. Combined Immunodeficiency and Atopy Caused by a Dominant Negative Mutation in CARD11. J Allergy Clin Immunol. 2018 May; 141 (5): 1818-1830.
Key words: combined immunodeficiency, atopy, CARD11, NF-kappaB, signaling
https://www.ncbi.nlm.nih.gov/pubmed/28826773

2. Eroglu A, Schulze KJ, Yager J, Cole RN, Christian P, Nonyane BAS, Lee SE, Wu LSF, Khatry S, Groopman J, West KP, Jr. Plasma proteins associated with circulating carotenoids in Nepalese school-aged children. Arch Biochem Biophys. 2018 May 15;646:153-60.
Key words: Antioxidants; Carotenoids; Nepal; Plasma proteins; Proteomics; beta-cryptoxanthin
https://www.ncbi.nlm.nih.gov/pubmed/29605494

3. Heerma van Voss MR, Kammers K, Vesuna F, Brilliant J, Bergman Y, Tantravedi S, Wu X, Cole RN, Holland A, van Diest PJ, Raman V. Global effects of ddx3 inhibition on cell cycle regulation identified by a combined phosphoproteomics and single cell tracking approach. Transl Oncol. 2018 June;11(3):755-63.
Key words: quantitative proteomics; phosphorylation; kinase substrates
https://www.ncbi.nlm.nih.gov/pubmed/29684792

4. Lee SE, West KP, Jr., Cole RN, Schulze KJ, Wu LS, Yager JD, Groopman J, Christian P. Novel plasma proteins in Nepalese school-aged children are associated with a small head size at birth. Sci Rep. 2018 April; 8(1):6390.
Key words: quantitative proteomics, biometrics, nutrition
https://www.ncbi.nlm.nih.gov/pubmed/29686285

1. Eroglu A, Schulze KJ, Yager J, Cole RN, Christian P, Nonyane BAS, Lee SE, Wu LSF, Khatry S, Groopman J, West KP, Jr. Plasma proteins associated with circulating carotenoids in nepalese school-aged children. Arch Biochem Biophys. 2018 May 15; 646:153-160.
Key words: Antioxidants, Carotenoids, Nepal, Plasma proteins, Proteomics, beta-cryptoxanthin
https://www.ncbi.nlm.nih.gov/pubmed/29605494

2. Heerma van Voss MR, Kammers K, Vesuna F, Brilliant J, Bergman Y, Tantravedi S, Wu X, Cole RN, Holland A, van Diest PJ, Raman V. Global effects of ddx3 inhibition on cell cycle regulation identified by a combined phosphoproteomics and single cell tracking approach. Transl Oncol. 2018 June; 11(3):755-63.
Key words: quantitative proteomics, phosphorylation, kinase substrates
https://www.ncbi.nlm.nih.gov/pubmed/29684792

3. Lee SE, West KP, Jr., Cole RN, Schulze KJ, Wu LS, Yager JD, Groopman J, Christian P. Novel plasma proteins in Nepalese school-aged children are associated with a small head size at birth. Sci Rep. 2018 Apr 23;8(1):6390.
Key words: quantitative proteomics, biometrics, nutrition
https://www.ncbi.nlm.nih.gov/pubmed/29686285

4. Dresselhaus EC, Boersma MCH, Meffert MK. Targeting of NF-?B to dendritic spines is required for synaptic signaling and spine development. J Neurosci. 2018 Apr 25;38(17):4093-4103. doi: 10.1523/JNEUROSCI.2663-16.2018. Epub 2018 Mar 19.
Key words: synaptic plasticity, dendritic spines, gene expression, Nuclear factor kappa B, neuron
https://www.ncbi.nlm.nih.gov/pubmed/29555853

5. Dadi H, Jones TA, Merico D, Sharfe N, Ovadia A, Schejter Y, Reid B, Sun M, Vong L, Atkinson A, Lavi S, Pomerantz JL#, Roifman CM#. Combined Immunodeficiency and Atopy Caused by a Dominant Negative Mutation in CARD11. J Allergy Clin Immunol. 2018 May; 141 (5): 1818-1830.
Key words: combined immunodeficiency, atopy, CARD11, NF-kappaB, signaling

https://www.ncbi.nlm.nih.gov/pubmed/28826773

1. Eroglu A, Schulze KJ, Yager J, Cole RN, Christian P, Nonyane BAS, Lee SE, Fune Wu LS, Khatry S, Groopman J and West KP, Jr. Plasma proteins associated with circulating carotenoids in nepalese school-aged children. Arch Biochem Biophys. 2018.
Key words: Antioxidants, Carotenoids, Nepal, Plasma proteins, Proteomics, beta-cryptoxanthin
https://www.ncbi.nlm.nih.gov/pubmed/29605494

2. Fukunaga R. Loquacious-PD removes phosphate inhibition of Dicer-2 processing of hairpin RNAs into siRNAs. Biochem Biophys Res Commun. 2018 Apr 15;498(4):1022-1027.
Key words: Dicer, siRNA, Phosphate, Loquacious
https://www.ncbi.nlm.nih.gov/pubmed/29550490

3. Vakrou S, Fukunaga R, Foster DB, Sorensen L, Liu Y, Guan Y, Woldemichael K, Pineda-Reyes R, Liu T, Tardiff JC, Leinwand LA, Tocchetti CG, Abraham TP, O'Rourke B, Aon MA, Abraham MR. Allele-specific differences in transcriptome, miRNome, and mitochondrial function in two hypertrophic cardiomyopathy mouse models. JCI Insight. 2018 Mar 22;3(6). pii: 94493.
Key words: Hypertrophic cardiomyopathy, HCM, miRNA, mRNA, mitochondria
https://www.ncbi.nlm.nih.gov/pubmed/29563334

1. Sack GH Jr., Zachara N, Rosenblum N, Talbot CC Jr, Kreimer S, Cole R, McDonald TL. Serum amyloid A1 (SAA1) protein in human colostrum. FEBS Open Bio. 2018 Jan 31;8(3):435-441.
Key words: acute-phase; amyloid; colostrum; serum amyloid A
http://onlinelibrary.wiley.com/doi/10.1002/2211-5463.12383/abstract
PMID: 29511620

1. Sack GH, Zachara N, Rosenblum N, Talbot Jr CC, Kreimer S, Cole R, McDonald TL. Serum amyloid A1 (SAA1) protein in human colostrum. FEBS Open Bio 2018. doi: 10.1002/2211-5463.12383
Key words: acute-phase; amyloid; colostrum; serum amyloid A
http://onlinelibrary.wiley.com/doi/10.1002/2211-5463.12383/abstract
No PMID available

2. Zhu L, Kandasamy SK, Fukunaga R. Dicer partner protein tunes the length of miRNAs using base-mismatch in the pre-miRNA stem. Nucleic Acids Res. 2018. doi: 10.1093/nar/gky043.
Key words: Dicer, miRNAs, dsRNA-binding protein, mismatch
https://www.ncbi.nlm.nih.gov/pubmed/29373753

1. Pardo CA, Meffert MK. Animal models in autism research: The legacy of Paul H. Patterson. Exp Neurol. 2018 Jan; 299(Pt A):197-198. doi: 10.1016/j.expneurol.2017.11.004. No abstract available.
Key words: Autism, Autism Spectrum Disorder, Cognitive Disorder, Brain, Animal Model
http://www.sciencedirect.com/science/article/pii/S0014488617302959?via%3Dihub
PMID: 29223411

1. Boamah DK, Zhou G, Ensminger AW, O'Connor TJ. From many hosts, one accidental pathogen: the diverse protozoan hosts of Legionella. Front Cell Infect Microbiol. 2017 Nov 30;7:477.
Key words: Legionella, amoebae, host range, environment
https://doi.org/10.3389/fcimb.2017.00477
PMID: 29250488

2. Zachara N, Akimoto Y, Hart GW. The O-GlcNAc Modification. In: Varki A, Cummings RD, Esko JD, Stanley P, Hart GW, Aebi M, Darvill AG, Kinoshita T, Packer NH, Prestegard JH, Schnaar RL, Seeberger PH, editors. Essentials of Glycobiology [Internet]. 3rd edition. Cold Spring Harbor (NY): Cold Spring Harbor Laboratory Press; 2015-2017. Chapter 19. 2017.
Key words: O-GlcNAcylation; Signaling; Glycosylation; Glycoprotein; Metabolism
https://www.ncbi.nlm.nih.gov/pubmed/28876858

1. Ghosh S, O'Connor TJ. Beyond paralogs: the multiple layers of redundancy in bacterial pathogenesis. Front Cell Infect Microbiol. 2017 Oct 1;7:467.
Key words: redundancy, pathogenesis, effector, Legionella
https://www.frontiersin.org/articles/10.3389/fcimb.2017.00467/full?&utm_source=
Email_to_authors_&utm_medium=Email&utm_content=T1_11.5e1_author&utm_
campaign=Email_publication&field=&journalName=Frontiers_in_Cellular_and_Infection_
Microbiology&id=308073
No PMID available

2. Heffner KM, Hizal DB, Yerganian GS, Kumar A, Can O, O'Meally RN, Cole R, Chaerkady R, Wu H, Bowen MA and Betenbaugh MJ. Lessons from the hamster: Cricetulus griseus tissue and cho cell line proteome comparison. J Proteome Res. 2017. Oct 6;16(10):3672-3687.
Key words: cell culture; CHO; gene ontology; hamster tissue; KEGG; liver; mass spectrometry; ovary; pathway analysis; proteomics
https://www.ncbi.nlm.nih.gov/pubmed/28876938

3. Liao SE, Fukunaga R. Kinetic analysis of small silencing RNA production by human and Drosophila dicer enzymes in vitro. Methods Mol Biol. 2018;1680:101-121. doi: 10.1007/978-1-4939-7339-2_7.
Key words; Dicer, siRNA, miRNA, kinetic analysis
https://www.ncbi.nlm.nih.gov/pubmed/29030844

4. Monahan Z, Ryan VH, Janke AM, Burke KA, Rhoads SN, Zerze GH, O'Meally R, Dignon GL, Conicella AE, Zheng W, Best RB, Cole RN, Mittal J, Shewmaker F and Fawzi NL. Phosphorylation of the FUS low-complexity domain disrupts phase separation, aggregation, and toxicity. EMBO J. 2017:36:2951-67.
Key words: amyotrophic lateral sclerosis/pathology, cell line, frontotemporal dementia/pathology, humans, magnetic resonance spectroscopy, phosphorylation, protein aggregation, pathological
protein conformation, protein processing, post-translational, RNA-binding protein, FUS/chemistry/*metabolism, amyotrophic lateral sclerosis, frontotemporal dementia, intrinsically disordered protein, prion, ribonucleoprotein granule
https://www.ncbi.nlm.nih.gov/pubmed/28790177

1. Heffner KM, Hizal DB, Yerganian GS, Kumar A, Can O, O'Meally RN, Cole R, Chaerkady R, Wu H, Bowen MA, Betenbaugh MJ. Lessons from the hamster: Cricetulus griseus tissue and cho cell line proteome comparison. J Proteome Res. 2017 Sep 14. doi: 10.1021/acs.jproteome.7b00382. [Epub ahead of print]
Key words: cell culture; CHO; gene ontology; hamster tissue; KEGG; liver; mass spectrometry; ovary; pathway analysis; proteomics
https://www.ncbi.nlm.nih.gov/pubmed/28876938

2. Maheshwari S, Miller MS, O'Meally R, Cole RN, Amzel LM, Gabelli SB. Kinetic and structural analyses reveal residues in phosphoinositide 3-kinase alpha that are critical for catalysis and substrate recognition. J Biol Chem. 2017 Aug 18;292(33):13541-13550.
Key words: ATP; lipid kinase; p110a; p110ap85a; phosphatidylinositide 3-kinase (PI 3-kinase); phosphoinositide; protein kinase; serine/threonine protein kinase
https://www.ncbi.nlm.nih.gov/pubmed/28676499

3. Monahan Z, Ryan VH, Janke AM, Burke KA, Rhoads SN, Zerze GH, O'Meally R, Dignon GL, Conicella AE, Zheng W, Best RB, Cole RN, Mittal J, Shewmaker F, Fawzi NL. Phosphorylation of the fus low-complexity domain disrupts phase separation, aggregation, and toxicity. EMBO J. 2017 Aug 8. pii: e201696394.
Key words: amyotrophic lateral sclerosis; frontotemporal dementia; intrinsically disordered protein; prion; ribonucleoprotein granule
https://www.ncbi.nlm.nih.gov/pubmed/28790177

4. Ratovitski T, O'Meally RN, Jiang M, Chaerkady R, Chighladze E, Stewart JC, Wang X, Arbez N, Roby E, Alexandris A, Duan W, Vijayvargia R, Seong IS, Lavery DJ, Cole RN, Ross CA. Post-translational modifications (ptms), identified on endogenous huntingtin, cluster within proteolytic domains between heat repeats. J Proteome Res. 2017 Aug 4;16(8):2692-2708.
Key words: Huntington's disease; TMT; human brain; mass spectrometry; neurodegenerative disorder; post-translational modifications
https://www.ncbi.nlm.nih.gov/pubmed/28653853

5. Sarker R, Cha B, Kovbasnjuk O, Cole R, Gabelli S, Tse CM, Donowitz M. Phosphorylation of nhe3-s719 regulates nhe3 activity through the formation of multiple signaling complexes. Mol Biol Cell. 2017 Jul 1;28(13):1754-1767.
Key words: AKT inhibitor VIII, Carbachol, 2-Dimethylamino-4,5,6,7-tetrabromo-1H-benzimidazol Forskolin, Wortmannin
https://www.ncbi.nlm.nih.gov/pubmed/28495796

1. Maheshwari S, Miller MS, O'Meally R, Cole RN, Amzel LM, Gabelli SB. Kinetic and structural analyses eveal residues in phosphoinositide 3-kinase alpha that are critical for catalysis and substrate recognition. J Biol Chem. 2017 Aug 18;292(33):13541-13550.
Key words: Atp, lipid kinase, p110a, p110ap85a, phosphatidylinositide 3-kinase (PI 3-kinase), phosphoinositide, protein kinase, serine/threonine protein kinase
https://www.ncbi.nlm.nih.gov/pubmed/28676499

2. Monahan Z, Ryan VH, Janke AM, Burke KA, Rhoads SN, Zerze GH, O'Meally R, Dignon GL, Conicella AE, Zheng W, Best RB, Cole RN, Mittal J, Shewmaker F, Fawzi NL. Phosphorylation of the fus low-complexity domain disrupts phase separation, aggregation, and toxicity. EMBO J. 2017 Aug 8. pii: e201696394.
Key words: amyotrophic lateral sclerosis, frontotemporal dementia, intrinsically disordered protein prion ribonucleoprotein granule
https://www.ncbi.nlm.nih.gov/pubmed/28790177

3. Ratovitski T, O'Meally RN, Jiang M, Chaerkady R, Chighladze E, Stewart JC, Wang X, Arbez N, Roby E, Alexandris A, Duan W, Vijayvargia R, Seong IS, Lavery DJ, Cole RN, Ross CA. Post-translational modifications (ptms), identified on endogenous huntingtin, cluster within proteolytic domains between heat repeats. J Proteome Res. 2017 Aug 4;16(8):2692-2708.
Key words: Huntington's disease, Tmt, human brain, mass spectrometry, neurodegenerative disorder, post-translational modifications
https://www.ncbi.nlm.nih.gov/pubmed/28653853

4. Sarker R, Cha B, Kovbasnjuk O, Cole R, Gabelli S, Tse CM and Donowitz M. Phosphorylation of nhe3-s719 regulates nhe3 activity through the formation of multiple signaling complexes. Mol Biol Cell. 2017:28:1754-67.
Key words: AKT inhibitor VIII, Carbachol, 2-Dimethylamino-4,5,6,7-tetrabromo-1H-benzimidazol, forskolin, 4,5,6,7-Tetrabromo-2-azabenzimidazole, 4,5,6,7-Tetrabromobenzotriazol, lysophosphatidic acid, Na+/H+ exchanger 3, Na+/H+ exchange regulatory cofactor, sorting nexin 27, wortmannin
https://www.ncbi.nlm.nih.gov/pubmed/28495796

1. Groves JA, Zachara NE. Characterization of tools to detect and enrich human and mouse O-GlcNAcase. Glycobiology. 2017 Jun 8. doi: 10.1093/glycob/cwx051. [Epub ahead of print]
Key words: mgea5, OGT, immunoprecipitation, interaction, signaling
https://www.ncbi.nlm.nih.gov/pubmed/28595377

2. Groves JA, Maduka AO, O'Meally RN, Cole RN, Zachara NE. Fatty acid synthase inhibits the O-GlcNAcase during oxidative stress. J Biol Chem. 2017 Apr 21;292(16):6493-6511. doi: 10.1074/jbc.M116.760785. Epub 2017 Feb 23. PMID: 28232487
Key words: O-GlcNAcylation; post-translational modification (PTM); cardiovascular disease; protein-protein interaction; signal transduction; BioID;
https://www.ncbi.nlm.nih.gov/pubmed/28232487

3. Kandasamy SK, Zhu L, Fukunaga R. The C-terminal dsRNA-binding domain of Drosophila Dicer-2 is crucial for efficient and high-fidelity production of siRNA and loading of siRNA to Argonaute2.
RNA. 2017 Jul;23(7):1139-1153.
Key words: siRNA, Dicer, RNA silencing, dsRNA-binding domain
https://www.ncbi.nlm.nih.gov/pubmed/28416567

1. Dickens AM, Tovar YRLB, Yoo SW, Trout AL, Bae M, Kanmogne M, Megra B, Williams DW, Witwer KW, Gacias M, Tabatadze N, Cole RN, Casaccia P, Berman JW, Anthony DC and Haughey NJ. Astrocyte-shed extracellular vesicles regulate the peripheral leukocyte response to inflammatory brain lesions. Sci Signal. 2017 Apr 4;10(473).
Key words: leukocyte, inflammatory brain lesion, vesicles
https://www.ncbi.nlm.nih.gov/pubmed/28377412

2. Groves JA, Maduka AO, O'Meally RN, Cole RN and Zachara NE. Fatty acid synthase inhibits the O-GlcNAcase during oxidative stress. J Biol Chem. 2017 Apr 21;292(16):6493-6511.
Key words: BioID, O-GlcNAcylation, fatty acid synthase (FAS), glycoprotein, mgea5, oxidative stress, post-translational modification (PTM), protein-protein interaction, proteomics, signal transduction
https://www.ncbi.nlm.nih.gov/pubmed/28232487

3. Kim A, Boronina TN, Cole RN, Darrah E and Sadegh-Nasseri S. Distorted immunodominance by linker sequences or other epitopes from a second protein antigen during antigen-processing. Sci Rep. 2017 Apr 19;7:46418.
Key words: epitope hierarchy, antigenic determinants, MHC II, HLA-DM, HLA-DO, mass spectrometry
https://www.ncbi.nlm.nih.gov/pubmed/28422163

4. Lee SE, Stewart CP, Schulze KJ, Cole RN, Wu LS, Yager JD, Groopman JD, Khatry SK, Adhikari RK, Christian P and West KP, Jr. The plasma proteome is associated with anthropometric status of undernourished nepalese school-aged children. J Nutr. 2017 Mar;147(3):304-313.
Key words: Nepal, anthropometry, children, insulin-like growth factor I, insulin-like growth factor-binding proteins, mass spectrometry, plasma proteome
https://www.ncbi.nlm.nih.gov/pubmed/28148680

5. Sundararajan K, Goley ED. Cytoskeletal proteins in Caulobacter crescentus: Spatial Orchestrators of Cell Cycle Progression, Development, and Cell Shape. Subcell Biochem. 2017; 84:103-137.
Key words: Caulobacter crescentus, cytoskeleton, cell cycle, bacteria, development
https://www.ncbi.nlm.nih.gov/pubmed/28500524

1. Sell GL, Schaffer TB, Margolis SS. Reducing expression of synapse-restricting protein Ephexin5 ameliorates Alzheimer's-like impairment in mice. J Clin Invest. 2017 Mar 27. pii: 85504. doi: 10.1172/JCI85504. [Epub ahead of print]
Key words: Alzheimer's Disease, Ephexin5, Synapses
https://www.jci.org/articles/view/85504
PMID: 28346227

1. Cutler JA, Tahir R, Sreenivasamurthy SK, Mitchell C, Renuse S, Nirujogi RS, Patil AH, Heydarian M, Wong X, Wu X, Huang TC, Kim MS, Reddy KL, Pandey A. Differential signaling through p190 and p210 BCR-ABL fusion proteins revealed by interactome and phosphoproteome analysis. Leukemia. 2017 Mar 28. doi: 10.1038/leu.2017.61. [Epub ahead of print]
Key words: fusion proteins, leukemia, signaling pathway
https://www.ncbi.nlm.nih.gov/pubmed/28210003

2. Darrah E, Kim A, Zhang X, Boronina T, Cole RN, Fava A, Giles JT, Iii CO, Chalmers MJ, Griffin PR, Sadegh-Nasseri S and Rosen A. Proteolysis by granzyme b enhances presentation of autoantigenic peptidylarginine deiminase 4 epitopes in rheumatoid arthritis. J Proteome Res. 2017 Jan 6;16(1):355-365.
Key words: antigen presentation, antigen processing, autoantigen, autoimmunity, epitope, hydrogen-deuterium exchange, mass spectrometry, peptidylarginine deiminase, rheumatoid arthritis, shared epitope
https://www.ncbi.nlm.nih.gov/pubmed/27700100

3. Groves JA, Maduka AO, O'Meally RN, Cole RN, Zachara NE. Fatty acid synthase inhibits the O-GlcNAcase during oxidative stress.
J Biol Chem. 2017 Feb 23. pii: jbc.M116.760785. doi: 10.1074/jbc.M116.760785. [Epub ahead of print]
PMID: 28232487
Key words: BioID; O-GlcNAcylation; fatty acid synthase (FAS); glycoprotein; mgea5; oxidative stress; post-translational modification (PTM); protein-protein interaction; proteomics; signal transduction
https://www.ncbi.nlm.nih.gov/pubmed/28232487

4. Lee SE, Stewart CP, Schulze KJ, Cole RN, Wu LS, Yager JD, Groopman JD, Khatry SK, Adhikari RK, Christian P and West KP, Jr. The plasma proteome is associated with anthropometric status of undernourished nepalese school-aged children. J Nutr. 2017:147:304-13.
Key words: Nepal, anthropometry, children, insulin-like growth factor I, insulin-like growth factor-binding proteins, mass spectrometry, plasma proteome
https://www.ncbi.nlm.nih.gov/pubmed/28148680

5. Ramachandran KV, Margolis SS. A mammalian nervous-system-specific plasma membrane proteasome complex that modulates neuronal function. Nat Struct Mol Biol. 2017 Mar 13.
Key words: proteasome, nervous system, peptides
http://www.nature.com/nsmb/journal/vaop/ncurrent/full/nsmb.3389.html

6. Martinez MR, Dias TB, Natov PS, Zachara NE. Stress-induced O-GlcNAcylation: an adaptive process of injured cells. Biochem Soc Trans. 2017 Feb 8;45(1):237-249. doi: 10.1042/BST20160153. Review.
Key words: OGT; chaperone; glycoprotein; heat shock response; mgea5; signal transduction
https://www.ncbi.nlm.nih.gov/pubmed/28202678

7. Xian L, Reddy KL, Resar LMS. Hmga1 deficiency: "SAC-King" the SAC genes to incite chromosomal instability. Cell Cycle. 2017 Jan 2;16(1):17-8.
Key words: CIN; HMGA1; SAC; chromosomal instability; high mobility group A1; spindle associated checkpoint
https://www.ncbi.nlm.nih.gov/pubmed/27977330

1. Caterina MJ, Pang Z. TRP channels in skin biology and pathophysiology. Pharmaceuticals (Basel). 2016 Dec 14;9(4).
Key words: pain, skin, Transient receptor potential
https://www.ncbi.nlm.nih.gov/pubmed/27983625

2. Darrah E, Kim A, Zhang X, Boronina T, Cole RN, Fava A, Giles JT, Iii CO, Chalmers MJ, Griffin PR, Sadegh-Nasseri S, Rosen A. Proteolysis by granzyme b enhances presentation of autoantigenic peptidylarginine deiminase 4 epitopes in rheumatoid arthritis. J Proteome Res. 2017 Jan 6;16(1):355-365.
Key words: antigen presentation, antigen processing, autoantigen, autoimmunity, epitope, hydrogen-deuterium exchange, mass spectrometry, peptidylarginine deiminase, rheumatoid arthritis, shared epitope
https://www.ncbi.nlm.nih.gov/pubmed/27700100

3. Lee A, Miller D, Henry R, Paruchuri VD, O'Meally RN, Boronina T, Cole RN and Zachara NE. Combined antibody/lectin enrichment identifies extensive changes in the o-glcnac sub-proteome upon oxidative stress. J Proteome Res. 2016 Dec 2;15(12):4318-4336.
Key words: O-GlcNAc, glycoproteins, glycosylation, signal transduction
https://www.ncbi.nlm.nih.gov/pubmed/27669760

4. Pan B, Byrnes K, Schwartz M, Hansen CD, Campbell CM, Krupiczojc M, Caterina MJ, Polydefkis M. Peripheral neuropathic changes in pachyonychia congenita. Pain. 2016 Dec;157(12):2843-2853.
Key words: merkel cell, keratoderma, keratin, neuropathy
https://www.ncbi.nlm.nih.gov/pubmed/27776012

5. Raben DM, Barber CN. Phosphatidic Acid and Neurotransmission. Adv Biol Regul. 2017 Jan;63:15-21.
Key words: Diacylglycerol Kinase, Phospholipase D, Phosphatidic Acid, Neurotransmission http://www.sciencedirect.com/science/article/pii/S2212492616300355
PMID: 27671966

6. Solís-López A, Kriebs U, Marx A, Mannebach S, Liedtke WB, Caterina MJ, Freichel M, Tsvilovskyy VV. Analysis of TRPV channel activation by stimulation of FC?RI and MRGPR receptors in mouse peritoneal mast cells. PLoS One. 2017 Feb 3;12(2):e0171366.
Key words: mast cell, degranulation, antigen receptor, transient receptor potential
https://www.ncbi.nlm.nih.gov/pubmed/28158279

7. Yang YK, Yang C, Chan W, Wang Z, Deibel KE, Pomerantz JL. Molecular determinants of scaffold-induced linear ubiquitinylation of B cell lymphoma/leukemia 10 (Bcl10) during T Cell receptor and oncogenic caspase recruitment domain-containing protein 11 (CARD11) signaling. J Biol Chem. 2016 Dec 9;291(50):25921-25936.
Key words: CARD11; Bcl10; Lymphoma; LUBAC; NF-kappaB
https://www.ncbi.nlm.nih.gov/pubmed/27777308

1. Lis P, Dyl?g M, Nied?wiecka K, Ko YH, Pedersen PL, Goffeau A, U?aszewski S. The HK2 dependent "Warburg Effect" and mitochondrial oxidative phosphorylation in cancer: targets for effective therapy with 3-Bromopyruvate. Molecules. 2016 Dec 15;21(12). pii: E1730. Review.
Key words: 3-bromopyruvate; Crabtree effect; Warburg effect; antitumor therapy; buthionine sulphoximine; glutathione; oxidative phosphorylation
https://www.ncbi.nlm.nih.gov/pubmed/27983708

2. Tu-Sekine B, Raben DM. Measuring diacylglycerol kinase-theta activity and binding. Methods in Enzymol. 2017;583:231-253.
Key words: diacylglycerol kinase, interfacial enzymology, binding assay, liposomes
https://www.ncbi.nlm.nih.gov/pubmed/28063493

3. Yang YK, Yang C, Chan W, Wang Z, Deibel KE, Pomerantz JL. Molecular determinants of scaffold-induced linear ubiquitinylation of B cell lymphoma/leukemia 10 (Bcl10) during T cell receptor and oncogenic Caspase Recruitment Domain-Containing Protein 11 (CARD11) signaling. J Biol Chem. 2016 Dec 9;291(150):25921-25936.
Key words: CARD11; Bcl10; Lymphoma; LUBAC; NF-kappaB
https://www.ncbi.nlm.nih.gov/pubmed/27777308

1. Kandasamy S, Fukunaga R. A phosphate-binding pocket in Dicer-2 PAZ domain for high-fidelity siRNA production. Proc Natl Acad Sci U S A. 2016 Dec 6;113(49):14031-14036.
Key words: Dicer, RNA silencing, siRNA, fidelity, phosphate
https://www.ncbi.nlm.nih.gov/pubmed/27872309

2. Yang YK, Yang C, Chan W, Wang Z, Deibel KE, Pomerantz JL. Molecular determinants of scaffold-induced linear ubiquitinylation of B cell lymphoma/leukemia 10 (Bcl10) during T Cell receptor and oncogenic caspase recruitment domain-containing protein 11 (CARD11) Signaling.J Biol Chem. 2016 Oct 24. pii: jbc.M116.754028. [Epub ahead of print]
Key words: CARD11; Bcl10; Lymphoma; LUBAC; NF-kappaB
https://www.ncbi.nlm.nih.gov/pubmed/27777308

1. Darrah E, Kim A, Zhang X, Boronina T, Cole RN, Fava A, Giles JT, Bingham Iii CO, Chalmers MJ, Griffin PR, Sadegh-Nasseri S and Rosen A. Proteolysis by granzyme b enhances presentation of autoantigenic peptidylarginine deiminase 4 epitopes in rheumatoid arthritis. J Proteome Res. 2016; Oct 4 [Epub ahead of print].
Key words: antigen presentation; antigen processing; autoantigen; autoimmunity; epitope; hydrogen?deuterium exchange; mass spectrometry; peptidylarginine deiminase; rheumatoid arthritis; shared epitope
http://www.ncbi.nlm.nih.gov/pubmed/27700100

2. Foster DB, Liu T, Kammers K, O'Meally R, Yang N, Papanicolaou KN, Talbot CC, Jr., Cole RN and O'Rourke B. Integrated omic analysis of a guinea pig model of heart failure and sudden cardiac death. J Proteome Res. 2016 Sep 2;15(9):3009-28.
Key words: heart failure; hypertrophy; mass spectrometry; median sweep; metabolic bottleneck; metabolome; pathway analysis; proteome; proteomics; transcriptome
http://www.ncbi.nlm.nih.gov/pubmed/27399916

3. Lee A, Miller D, Henry R, Paruchuri VD, O'Meally RN, Boronina T, Cole RN and Zachara NE. Combined antibody/lectin enrichment identifies extensive changes in the o-glcnac sub-proteome upon oxidative stress. J Proteome Res. 2016 Oct 14 [Epub ahead of print].
Key words: O-GlcNAc; glycoproteins; glycosylation; signal transduction
http://www.ncbi.nlm.nih.gov/pubmed/27669760

4. Ratovitski T, Chaerkady R, Kammers K, Stewart JC, Zavala A, Pletnikova O, Troncoso JC, Rudnicki DD, Margolis RL, Cole RN and Ross CA. Quantitative proteomic analysis reveals similarities between huntington's disease (hd) and huntington's disease-like 2 (hdl2) human brains. J Proteome Res. 2016 Sep 2;15(9):3266-83.
Key words: Huntington's disease; TMT; human brain; iTRAQ; neurodegenerative disorder; proteomics
http://www.ncbi.nlm.nih.gov/pubmed/27486686

5. Yang YK, Yang C, Chan W, Wang Z, Deibel KE, Pomerantz JL. Molecular determinants of scaffold-induced linear ubiquitinylation of B cell lymphoma/leukemia 10 (Bcl10) during T cell receptor and oncogenic caspase recruitment domain-containing protein 11 (CARD11) Signaling.J Biol Chem. 2016 Oct 24. pii: jbc.M116.754028. [Epub ahead of print]
Key words: CARD11; Bcl10; Lymphoma; LUBAC; NF-kappaB
https://www.ncbi.nlm.nih.gov/pubmed/27777308

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