Extracellular Matrix (ECM) Biology Laboratory

  • A major focus in our laboratory is extracellular matrix (ECM), and its role in innate immune inflammatory responses at mucosal surfaces. The ECM has a significant role in modulating the local inflammatory milieu, while its breakdown can present immune cells with endogenous danger signals to drive excessive immune responses. However, these events are poorly understood. Our studies on lumican, one such ECM protein, shows that its expression increases in Crohn’s disease and mouse models of colitis. We found that a segment of the lumican protein interacts with toll-like receptor 4 on neutrophils and macrophages that regulates innate immune response and production of inflammatory cytokines. We developed mice deficient in lumican that show poor recovery from a chemically induced colitis. The function of lumican in inflammation may be a double-edged sword—needed for development of protective innate immunity but unrestricted can cause immune dysregulation and chronic inflammation. We are currently investigating the molecular nature of lumican interactions with host immune functions and developing mimetic peptides and anti-lumican antibodies that could be ultimately used to modulate inflammation. Treatments using anti-TNF-? or other antibodies that block major components of the immune response may have harmful immunosuppressive effects. Future treatment strategies based on lumican or other proteins of the ECM could become milder approaches to suppress localized inflammation. Recently, we have started investigating, biglycan another lumican-like ECM protein that is perceived as an endogenous danger signal in chronic inflammatory settings. Our laboratory has examined differential gene expression patterns in Crohn’s disease and ulcerative colitis to establish signature expression patterns. A subset of these genes will be pursued in the future for elucidating pathogenesis of these two related inflammatory bowel diseases.

    Research Areas: inflammatory bowel disease, gastrointestinal

    Lab Website

    Principal Investigator

    Shukti Chakravarti, M.S., Ph.D.