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Molecular Biology and Genetics Archives 1. Benachenhou
F, Sperber GO, Bongcam-Rudloff E, Andersson G, Boeke JD, Blomberg J.
Conserved structure and inferred evolutionary history of long terminal
repeats (LTRs).Mob DNA. 2013 Feb 1;4(1):5. 2. Huang CR, Burns KH, Boeke JD. Active transposition
in genomes. Annu Rev Genet. 2012;46:651-75. doi: 10.1146/annurev-genet-110711-155616. 3. Huang Q, Purzycka KJ, Lusvarghi S, Li D, Legrice
SF, Boeke JD. Retrotransposon Ty1 RNA contains a 5'-terminal long-range
pseudoknot required for efficient reverse transcription. RNA. 2013 Mar;19(3):320-32. 4. Li X, Ewis H, Hice RH, Malani N, Parker N,
Zhou L, Feschotte C, Bushman FD, Atkinson PW, Craig NL. A resurrected
mammalian hAT transposable element and a closely related insect element
are highly active in human cell culture. PNAS. 2013; 110(6):E478-87;
5. Lu, JY, Lin YY, Boeke JD, Zhu H. Using functional
proteome microarrays to study protein lysine acetylation. Methods Mol
Biol. 2013;981:151-65. doi: 10.1007/978-1-62703-305-3_12. 6. Mitra R, Li X, Kapusta A, Mayhew D, Mitra RD,
Feschotte C, Craig NL. Functional characterization of piggyBat from
the bat Myotis lucifugus unveils an active mammalian DNA transposon.
Proc. Nat'l Acad. Sci. U.S.A. 2013; 110(1):234-239. 7. Woodard LE, Li X, Malani N, Kaja A, Hice RH,
Atkinson PW, Bushman FD, Craig 8. Wang JT, Seydoux G. Germ cell specification.
Adv Exp Med Biol. 2013;757:17-39. 9. Yu H, Ye X, Guo N, Nathans J. Frizzled 2 and
frizzled 7 function redundantly in convergent extension and closure
of the ventricular septum and palate: evidence for a network of interacting
genes. Development. 2012 Dec;139(23):4383-94. 1. Burnight ER, Staber
JM, Korsakov P, Li X, Brett BT, Scheetz TE, Craig NL, McCray PB Jr.
A hyperactive transposase promotes persistent gene transfer of a piggyBac
DNAtransposon. Molecular Therapy-Nucleic Acids. 2012; 1, e50. 3. Voronina E, Paix A, Seydoux G. The P granule
component PGL-1 promotes the localization and silencing activity of
the PUF protein FBF-2 in germline stem cells. Development. 2012 Oct;139(20):3732-40. 4. Wang JT, Seydoux G. Germ cell specification.
Adv Exp Med Biol. 2013;757:17-39. 5. Woodard LE, Malani N, Kaja A, Hice RH, Atkinson
PW, Bushman FD, Craig NL, Wilson MH. Comparative analysis of the recently
discovered hAT transposonTcBuster in human cells. PLoS ONE. 2012; 7(11):e42666. 6. Yu H, Ye X, Guo N, Nathans J. Frizzled
2 and frizzled 7 function redundantly in convergent extension and closure
of the ventricular septum and palate: evidence for a network of interacting
genes. Development. 2012 Dec;139(23):4383-94. 1. Dancy BM, Crump
NT, Peterson DJ, Mukherjee C, Bowers EM, Ahn YH, Yoshida M, Zhang J,
Mahadevan LC, Meyers DJ, Boeke JD, Cole PA. Live-cell studies of p300/CBP
histone acetyltransferase activity and inhibition. 2012 Sep 24;13(14):2113-21.
2. Dai L, Taylor MS, O'Donnell KA, Boeke JD. Poly(A)
binding protein C1 is essential for efficient L1 retrotransposition
and affects L1 RNP formation. 2012 Aug 20. [Epub ahead of print]. 3. Lee SJ, Huynh TV, Lee YS, Sebald SM, Wilcox-Adelman
SA, Iwamori N, Lepper C, Matzuk MM, Fan CM. Role of satellite cells
versus myofibers in muscle hypertrophy induced by inhibition of the
myostatin/activin signaling pathway. Proc Natl Acad Sci U S A. 2012
Aug 28;109(35):E2353-60. 1. Baker RP, Urban
S. Architectural and thermodynamic principles underlying intramembrane
protease function. Nature Chemical Biology. 2012 Jul 15;8(9):759-68. 2. Greider CW. Wnt regulates TERT--putting the
horse before the cart. Science. 2012 June; 336:1519-20. 3. Shoemaker CJ, Green R. Translation drives mRNA
quality control. Nat Struct Mol Biol. 2012 Jun 5;19(6):594-601. 4. Zhou Y, Moin SM, Urban S, Zhang Y. An
internal water-retention site in the rhomboid intramembrane protease
GlpG ensures catalytic efficiency. Structure. 2012 Jul 3;20(7):1255-63. 1. Djuranovic S, Nahvi
A, Green R. miRNA-mediated gene silencing by translational repression
followed by mRNA deadenylation and decay. Science. 2012 Apr 13;336(6078):237-40. 2. Petropoulos AD, Green R. Further in vitro exploration
fails to support the allosteric three-site model. J Biol Chem. 2012
Apr 6;287(15):11642-8. 3. Shoemaker CJ, Green R. Translation drives mRNA
quality control. Nat Struct Mol Biol. 2012 Jun 5;19(6):594-601. 4. Strong MA, Vidal-Cardenas SL, Karim B, Yu H,
Guo N, Greider CW. Phenotypes in mTERT?/? and mTERT?/? mice are due
to short telomeres, not telomere-independent functions of telomerase
reverse transcriptase. Mol Cell Biol. 2011 Jun;31(12):2369-79. Epub
2011 Apr 4. 1. Cooper CL, Hardy RR, Reth M, Desiderio S. Cell-nonautonomous
hedgehod signaling promotes murine B lumphopoiesis from hematopoietic
progenitors. Blood. 2012 April 18. [Epub ahead of print]. 1. Urban S, Dickey SW. A decade of rhomboid proteases;
charting progress on mechanism and function. Genome Biology. 2011 Oct
27; 12(10): 231-41. 1. Cai Y, Boeke JD.
Genome remodeling. Nat Biotechnol. 2011 Sept 8;29(9):807-8. 2. Doherty JE, Huye L, Yusa K, Zhou L, Craig NL,
Wilson M. Hyperactive piggyBac gene transfer in human cells and in vivo.
Hum Gene Ther. 2011 Oct 12 [Epub ahead of print]. 3. Dymond JS, Richardson SM, Coombes C, Babatz
T, Muller S, Annaluru N, Blake WJ, Schwerzmann JW, Dai J, Lindstrom
DL, Boeke A, Gottschling DE, Chandrasegaran S, Bader JS, Boeke JD. Synthetic
chromosome arms function in yeast and generate phenotypic diversity
by design. Nature. 2011 Sep 14;477(7365):471-6 4. Griffin EE, Odde DJ, Seydoux G. Regulation
of the MEX-5 gradient by a spatially segregated kinase/phosphatase cycle.
Cell. 2011 Sep 16;146(6):955-68. 5. Li MA, Turner D, Ning Z, Yusa K, Liang Q, Eckert
S, Rad L, Fitzgerald T, Craig NL, Bradley A. Mobilization of giant piggyBac
transposons in the mouse genome. Nucleic Acids Res. 2011 Sept 24 [Epub
ahead of print}. 6. Li Z, Craig NL, Peters JE Transposon Tn7. In:
Bacterial Integrative Mobile Genetic 7. Lu JY, Lin YY, Sheu JC, Wu JT, Lee FJ, Chen
Y, Lin MI, Chiang FT, Tai TY, Berger SL, Zhao Y, Tsai KS, Zhu H, Chuang
LM, Boeke JD. Acetylation of yeast AMPK controls intrinsic aging independently
of caloric restriction. Cell. Sep 16;146(6):969-79. 8. Motegi F, Zonies S, Hao Y, Cuenca AA, Griffin
E, Seydoux G.Microtubules induce self-organization of polarized PAR
domains in Caenorhabditis elegans zygotes. Nat Cell Biol. 2011 Oct 9;13(11):1361-7.
9. Zaher HS, Green R. A primary role for
release factor 3 in quality control during translation elongation in
Escherichia coli. Cell. 2011 Oct 14;147(2):396-408. 1. Cai Y, Boeke JD.
Genome remodeling. Nat Biotechnol. 2011 Sep 8;29(9):807-8. 2. Ortiz-Meoz RF, Green R. Helix 69 is key for
uniformity during substrate selection on the ribosome. J Biol Chem.
2011 Jul 22;286(29):25604-10. 3. Matsuoka RL, Chivatakarn O, Badea TC, Samuels
IS, Cahill H, Katayama K, Kumar SR, Suto F, Chédotal A, Peachey
NS, Nathans J, Yoshida Y, Giger RJ, Kolodkin AL. Class 5 transmembrane
semaphorins control selective Mammalian retinal lamination and function.
Neuron. 2011 Aug 11;71(3):460-73. 4. Cahill H, Rattner A, Nathans J. Preclinical
assessment of CNS drug action using eye movements in mice. J Clin Invest.
2011 Sep 1;121(9):3528-41. doi: 10.1172/JCI45557. Epub 2011 Aug 8. 5. Voronina E, Seydoux G, Sassone-Corsi P, Nagamori
I. RNA granules in germ cells. Cold Spring Harb Perspect Biol. 2011
Jul 18. 1. Dai L, Huang Q, Boeke JD. Effect of reverse
transcriptase inhibitors on LINE-1 and Ty1 reverse transcriptase activities
and on LINE-1 retrotransposition. BMC Biochem. 2011 May 5;12(1):18.
[Epub ahead of print] 2. Strong MA, Vidal-Cardenas SL, Karim B, Yu H,
Guo N, Greider CW. Phenotypes in mTERT+/- and mTERT-/- mice are due
to short telomeres, not telomere-independent functions of TERT. Mol
Cell Biol. 2011 Jun;31(12):2369-79. 3. Yu Q, Olsen L, Zhang X, Boeke JD, Bi X. Differential
contributions of histone H3 and H4 residues to heterochromatin structure.
Genetics. Mar 24. 2011 [Epub ahead of print] 1. An W, Dai L, Niewiadomska
AM, Yetil A, O'Donnell KA, Han JS, Boeke JD. Characterization of a synthetic
human LINE-1 retrotransposon ORFeus-Hs. Mob DNA. 2011 Feb 14;2(1):2.
2. Djuranovic S, Nahvi A, Green R. A parsimonious
model for gene regulation by miRNAs. Science. 2011 Feb 4;331(6017):550-3.
Review. 3. Li L, Zhang L, Fan J, Greenberg K, Desiderio
S, Rassool FV, Small D. Defective non-homologous end joining blocks
B-cell development in FLT3/ITD mice. Blood. 2011 Mar 17;117(11):3131-9. 4. Ye X, Wang Y, Rattner A, Nathans J. Genetic
mosaic analysis reveals a major role for frizzled 4 and frizzled 8 in
controlling ureteric growth in the developing kidney. Development. 2011
Mar;138(6):1161-72. 5. Zhang L, Reynolds TL, Shan X, Desiderio S.
Coupling of v(d)j recombination to the cell cycle suppresses genomic
instability and lymphoid tumorigenesis. Cell Press Immunity. 2011 Feb
25;34(2):163-74. 1. Barnett BP, Hwang
Y, Taylor MS, Kirchner H, Pfluger PT, Bernard V, Lin YY, Bowers EM,
Mukherjee C, Song WJ, Longo PA, Leahy DJ, Hussain MA, Tschöp MH,
Boeke JD,Cole PA. Glucose and weight control in mice with a designed
ghrelin O-acyltransferase inhibitor. Science. 2010 Dec 17;330(6011):1689-92. 2. Cai, J., Zhang, N., Zheng, Y., de Wilde, R.F.,
Maitra, A., and Pan, D. The Hippo signaling pathway restricts the oncogenic
potential of an intestinal regeneration program. Genes Dev. 2010 Nov
1, 24(21): 2383-2388. 3. Desiderio S. Temporal and spatial regulatory
functions of the V(D)J recombinase Semin Immunol 2010 Dec;22(6):362-9. 4. Gangadharan S., Mularoni L, Fain-Thornton J,
Wheelan SJ, Craig NL DNA transposon Hermes inserts into DNA in nucleosome-free
regions in vivo. Proc Natl Acad Sci USA 2010 Dec 21;107(51):21966-72. 5. Sens KL, Zhang S, Jin P, Duan D, Zhang G, Luo
F, Parachini L, Chen EH. An invasive podosome-like structure promotes
fusion pore formation during myoblast fusion. J Cell Biol. 2010 Nov
29;191(5):1013-27. 6. Xie Y, Rosser JM, Thompson TL, Boeke JD, An
W. Characterization of L1 retrotransposition with high-throughput dual-luciferase
assays. Nucleic Acid Research. 2010 Nov 10. [Epub ahead of print] 7. Yusa K, Zhou L, Li MA, Bradley A, Craig
NL. a hyperactive piggyBac transposase for mammalian applications. Proc
Natl Acad Sci USA 2011 Jan 25;108(4):1531-6. 1. Wang Y, Chang H, Nathans J. When whorls collide:
the development of hair patterns in frizzled 6 mutant mice. Development.
2010 Dec;137(23):4091-9. 1. Ye X, Smallwood
P, Nathans J. Expression of the Norrie disease gene (Ndp) in developing
and adult mouse eye, ear, and brain. Gene Expr Patterns. 2010 Nov 3
[Epub ahead of print]. 1. Badea
TC, Nathans J. Morphologies of mouse retinal ganglion cells expressing
transcription factors Brn3a, Brn3b, and Brn3c: Analysis of wild type
and mutant cells using genetically-directed sparse labeling. Vision
Res. 2010 Sep 6. [Epub ahead of print] 2. Chaconas G, Craig N, Curcio MJ, Deininger P,
Feschotte C, Levin H, Rice PA, Voytas 3. Chuang N, Mori S, Yamamoto A, Jiang H, Ye X,
Xu X, Richards LJ, Nathans J, Miller MI, Toga AW, Sidman RL, Zhang J.
An MRI-based atlas and database of the developing mouse brain. Neuroimage.
2011 Jan 1;54(1):80-9. 4. Dai J, Hyland EM, Norris A, Boeke JD. Genetics.
2010 Aug 16. [Epub ahead of print] 5. Greider CW. Telomerase Discovery: The Excitement
of Putting Together Pieces of the Puzzle (Nobel Lecture). Angew Chem
Int Ed Engl. 6. Holder JW, Craig NL. Architecture of the Tn7
post-transposition complex: an elaborate 7. Ling, C., Zheng, Y., Yin, F., Yu, J., Huang,
J., Hong, Y., Wu, S., and Pan, D. The apical transmembrane protein Crumbs
functions as a tumor suppressor that regulates Hippo signaling by binding
to Expanded. Proc. Natl. Acad. Sci. USA 2010; 107: 10532-10537. 8. Ortiz-Meoz RF, Green R. Functional elucidation
of a key contact between the tRNA and the large ribosomal subunit rRNA
during decoding. RNA. 2010 Oct;16(10):2002-13. 9. Shoemaker CJ, Eyler DE, Green R. Dom34:Hbs1
promotes subunit dissociation and peptidyl-tRNA drop-off to initiate
no-go decay. Science. 2010 Oct 15;330(6002):369-72. 10. Ye X, Wang Y, Nathans J. The Norrin/Frizzled4
signaling pathway in retinal vascular development and disease. Trends
Mol Med. 2010 Aug 3. [Epub ahead of print] 11. Yu H, Smallwood PM, Wang Y, Vidaltamayo
R, Reed R, Nathans J. Frizzled 1 and frizzled 2 genes function in palate,
ventricular septum and neural tube closure: general implications for
tissue fusion processes. Development. 2010 Nov;137(21):3707-17. 1. Chaconas
G, Craig N, Curcio MJ, Deininger P, Feschotte C, Levin H, Rice PA, Voytas
DF. Meeting report for mobile DNA 2010. Mob DNA 2010 Aug 24; 1(1):20. 2. Holder JW, Craig NL. Architecture of the Tn7
Post-Transposition Complex: an elaborate nucleoprotein structure. J
Mol Biol. 2010 Aug 13;401(2):167-81. 3. Huang CR, Schneider AM, Lu Y, Niranjan T, Shen
P, Robinson MA, Steranka JP, Valle D, Civin CI, Wang T, Wheelan SJ,
Ji H, Boeke JD, Burns KH. Mobile interspersed repeats are major structural
variants in the human genome. Cell. 2010 Jun 25;141(7):1171-82. 4. Mitra R, Mckenzie
GJ, Yi L, Lee CA, Craig NL. Characterization of the TnsD-attTn7 complex
that promotes site-specific insertion of Tn7. Mobile DNA 2010 Jul 23;1(1):18.
5. Pan X, Reissman S, Douglas NR, Huang Z, Yuan
DS, Wang X, McCaffery JM, Frydman J, Boeke JD. Trivalent arsenic inhibits
the functions of chaperonin complex. Genetics. 2010 Jul 26 [Epub ahead
of print]. 1. Cooper
EM, Boeke JD, Cohen RE. Specificity of the BRISC deubiquitinating enzyme
is not due to selective binding to Lys63-linked polyubiquitin. J Biol
Chem. 2010 Apr 2;285(14):10344-52. 2. Lee PA, Dymond JS, Scheifele LZ, Richardson
SM, Foelber KJ, Boeke JD, Bader JS. CLONEQC: lightweight sequence verification
for synthetic biology. Nucleic Acids Res. 2010 Mar 7;38(8):2617-23. 3. Matecic M, Smith DL, Pan X, Maqani N, Bekiranov
S, Boeke JD, Smith JS. A microarray-based genetic screen for yeast chronological
aging factors. PLoS Genet. 2010 Apr 22;6(4):e1000921 4. Richardson SM, Nunley PW, Yarrington RM, Boeke
JD, Bader JS. GeneDesign 3.0 is an updated synthetic biology toolkit.
Nucleic Acids Res. 2010 Mar 8;38(8):2603-6. Return to top of Publications - Molecular Biology and
Genetics Archives
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