April 2014
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Cell Biology Archives

1. Kee YS, Robinson DN. Micropipette aspiration for studying cellular mechanosensory responses and mechanics. Methods Mol. Biol. 2013; 983:367-382.
Key words: cell mechanics, mechanosensing, methodology, micropipette aspiration, motorized water manometer design
http://www.ncbi.nlm.nih.gov/pubmed/23494318

2. Srivastava V, Robinson DN. Cytokinesis. In Lennarz & Lane (eds.) The Encyclopedia of Biological Chemistry, 2013; Waltham, MA: Academic Press. Vol. 3, pp. 622-626.
Key words: actin, cell division, cytoskeleton, cytokinesis, basic concepts, myosin II

1. Dintzis R, McBride J. Chapter 1. Anatomy, Embryology, and Histology, in The Urinary Tract, A Comprehensive Guide to Patient Diagnosis and Management, Editors Hansel DE, McKenney JK, Stephenson AJ , Chang SS. Springer, 2012.
Key words: urinary tract, diagnosis, kidney

2. Robinson DN, Iglesias PA. Bringing the physical sciences into your cell biology research. Mol Biol Cell 2012 Nov;23(21):4167-4170.
Key words: cell biology research, collaboration, computational modeling, intedisciplinary research, physical science
http://www.ncbi.nlm.nih.gov/pubmed/23112230

1. Artemenko Y, Batsios P, Borleis J, Gagnon Z, Lee J, Rohlfs M, Sanséau D, Willard SS, Schleicher M, Devreotes PN. Tumor suppressor Hippo/MST1 kinase mediates chemotaxis by regulating spreading and adhesion. PNAS. 2012;109(34):13632-13637.
Key words: KrsB, adhesion, chemotaxis, motility, phosphorylation
http://www.ncbi.nlm.nih.gov/pubmed/22847424

2. Becker PM, Tran TS, Delannoy MJ, He C, Shannon JM, McGrath-Morrow S. Semaphorin 3A contributes to distal pulmonary epithelial cell differentiation and lung morphogenesis. PLoS One. 2011;6(11):e27449.
Key words: TEM of lung tissue, glycogen accumulation, alveoli
http://www.ncbi.nlm.nih.gov/pubmed/22096573

3. Dickinson D, Robinson DN, Nelson WJ, Weis WI. alpha-catenin and IQGAP regulate myosin localization to control epithelial tube morphogenesis in Dictyostelium. Dev Cell 2012; 23:533-546.
Key words: epithelial tubes, myosin II, alpha catenin, IQGAP, cell polarity, tissue morphogenesis
http://www.ncbi.nlm.nih.gov/pubmed/22902739

4. Lukyanenko V, Malyukova I, Hubbard A, Delannoy M, Boedeker E, Zhu C, Cebotaru L, Kovbasnjuk O. Enterohemorrhagic Escherichia coli infection stimulates Shiga toxin 1 macropinocytosis and transcytosis across intestinal epithelial cells. Am J Physiol Cell Physiol. 2011;301:C1140-1149.
Key words:TEM and SEM small intestine, E. coli infection, toxic bacterial infection
http://www.ncbi.nlm.nih.gov/pubmed/21832249

5. Nucifora LG, Burke KA, Feng X, Arbez N, Zhu S, Miller J, Yang G, Ratovitski T, Delannoy M, Muchowski PJ, Finkbeiner S, Legleiter J, Ross CA, Poirier MA. Identification of novel potentially toxic oligomers formed in vitro from mammalian-derived expanded huntingtin exon-1 protein. J Biol Chem;2012:287:16017-16028.
Key words: Negative stained electron microscopy, huntingins disease, fiber formation and aggregation
http://www.ncbi.nlm.nih.gov/pubmed/22433867

6. Porter JR, Lee CY, Espenshade PJ, Iglesias PA. Regulation of SREBP during hypoxia requires Ofd1-mediated control of both DNA binding and degradation. Mol Biol Cell 2012;23:3764-3774.
Key words: SREBP, hypoxia, yeast, prolyl hydroxylase
http://www.ncbi.nlm.nih.gov/pubmed/22833559

7. Raychaudhuri S, Young BP, Espenshade PJ, Loewen CJ. Regulation of lipid metabolism: a tale of two yeasts. Curr Opin Cell Biol 2012;24:502-508.
Key words: lipid metabolism, SREBP, yeast
http://www.ncbi.nlm.nih.gov/pubmed/22694927

8. Yan Z, Delannoy M, Ling C, Daee D, Osman F, Muniandy PA, Shen X, Oostra AB, Du H, Steltenpool J, Lin T, Schuster B, Décaillet C, Stasiak A, Stasiak AZ, Stone S, Hoatlin ME, Schindler D, Woodcock CL, Joenje H, Sen R, de Winter JP, Li L, Seidman MM, Whitby MC, Myung K, Constantinou A, Wang W. A histone-fold complex and FANCM form a conserved DNA-remodeling complex to maintain genome stability. Mol Cell 2010;37:865-878.
Key words: Confocal microscopy, DNA, histones
http://www.ncbi.nlm.nih.gov/pubmed/20347428

1. Ewald AJ, Huebner RJ, Palsdottir H, Lee JK, Perez MJ, Jorgens DM, Tauscher AN, Cheung KJ, Werb Z, Auer M. Mammary collective cell migration involves transient loss of epithelial features and individual cell migration within the epithelium. J Cell Sci. 2012 June 1;125(pt11):2638-2654.
Key words: Collective cell migration, apico-basal polarity, epithelial development, branching morphogenesis
http://www.ncbi.nlm.nih.gov/pubmed/22344263

2. Issigonis M, Matunis E. The Drosophila BCL6 homolog ken and barbie promotes somatic stem cell self-renewal in the testis niche. Dev Bio. 2012 Aug 15;368(2):181-192.
Key words: ken and barbie; Drosophila JAK-STAT; Stem cell; Niche
http://www.ncbi.nlm.nih.gov/pubmed/22580161

3. Ryan CJ, Roguev A, Patrick K, Xu J, Jahari H, Tong Z, Beltrao P, Shales M, Qu H, Collins SR, Kliegman, JI, Jiang L, Kuo D, Tosti E, Kim H, Edelmann W, Keogh M, Greene D, Tang C, Cunningham P, Shokat KM, Cagney G, Svensson JP, Guthrie C, Espenshade PJ, Ideker T, Krogan NJ. Hierarchical modularity and the evolution of genetic interactomes across species. Mol. Cell. 2012 Jun 8;46(5):691-704.
Key words: E-map, genetic interactions, yeast, evolution, networks
http://www.ncbi.nlm.nih.gov/pubmed/22681890

4. Sidhaye VK, Chau E, Srivastava V, Sirimalle S, Balabhadrapatruni C, Aggarwal NR, D'Alessio FR, Robinson DN, King LS. A novel role for aquaporin-5 in enhancing microtubule organization and stability. PLoS ONE. 2012;7(6):e38717
Key words: Aquaporin-5, Lung epithelia, Mechanosensing, Microtubules, Shear stress
http://www.ncbi.nlm.nih.gov/pubmed/22715407

1. Mohan K, Iglesias PA, Robinson DN. Separation anxiety; stress, tension, and cytokinesis. Exp. Cell Res. 2012 Jul 15;318(12):1428-34.
Key words: Actin dynamics, Cell division, Cell mechanics, Cleavate furrow, Mechanosensation, Myosin II
http://www.ncbi.nlm.nih.gov/pubmed/22487096

2. Ruch TR, Machamer CE. A single polar residue and distinct membrane topologies impact the function of the infectious bronchitis coronavirus E protein. PLoS Pathogens. 2012 May;8(5):e1002674.
Key words: coronavirus, E protein, membrane topology, Golgi, virus release
http://www.ncbi.nlm.nih.gov/pubmed/22570613

1. Chandran S, Machamer CE. Inactivation of ceramide transfer protein during proapoptotic stress by Golgi disassembly and caspase cleavage. Biochem J. 2012 Mar 1;442(2):391-401.
Key words: Golgi, ceramide, sphingomyelin, caspase-2
http://www.ncbi.nlm.nih.gov/pubmed/22129459

2. Iglesias PA, Devreotes PN. Biased excitable networks: how cells direct motion in response to gradients. Curr Opin Cell Biol 2012 Apr;24(2):245-53.
Key words: reaction diffusion; cell motility; chemotaxis
http://www.ncbi.nlm.nih.gov/pubmed/22154943

3. Kee YS, Ren Y, Dorfman D, Iijima M, Firtel RA, Iglesias PA, Robinson DN. A mechanosensory system governs myosin II accumulation in dividing cells. Mol Biol Cell. 2012 April;23(8):1510-1523.
Key words: control system, cortexillin, feedback, INCENP, kinesin-6, microtubule, myosin II, IQGAP, rac
http://www.ncbi.nlm.nih.gov/pubmed/22379107

4. Miyamoto T, Derose R, Suarez A, Ueno T, Chen M, Sun TP, Wolfgang MJ, Mukherjee C, Meyers DJ, Inoue T. Rapid and orthogonal logic gating with a gibberellin-induced dimerization system. Nat Chem Biol. 2012 Mar 25;8(5):465-70.
Key words: synthetic cell biology; novel chemical dimerizers; intracellular logic gates
http://www.ncbi.nlm.nih.gov/pubmed/22446836

5. Nakasone ES, Askautrud HA, Kees T, Park JH, Plaks V, Ewald AJ, Fein M, Rasch MG, Tan YX, Qiu J, Park J, Sinha P, Bissell MJ, Frengen E, Werb Z, Egeblad M. Imaging tumor-stroma interactions during chemotherapy reveals contributions of the microenvironment to resistance. Cancer Cell. 2012 April 17;21(4):488-503.
Key words: tumor microenvironment, breast cancer, chemoresistance, intravital imaging
http://www.ncbi.nlm.nih.gov/pubmed/22516258

6. Porter JR, Burg JS, Espenshade PJ, Iglesias PA. Identifying a static nonlinear structure in a biological system using noisy, sparse data. J Theoretical Biol. 2012 May 7;300:232-41.
Key words: mathematical modeling, SREBP, hypoxia, cholesterol
http://www.ncbi.nlm.nih.gov/pubmed/22310068

7. Robinson DN, Kee Y-S, Luo T, Surcel A. Understanding how dividing cells change shape. In Comprehensive Biophysics, Egelman EH (ed.); Elsevier, Amsterdam. 2012; Vol. 7, pp. 48-72.
Key words: cell mechanics, myosin II, actin filaments, cytokinesis, control system

8. Rogers AB, Dintzis RZ. Liver and Gallbladder in Comparative Anatomy and Histology, A Mouse and Human Atlas. (Editors Piper M. Treuting and Suzanne M. Dintzis, Elseviers), UK and USA, 2012; Chapter 13, pgs. 193-199.
Key words: liver, gallbladder, anatomy

9. Ruch TR, Machamer CE. A single polar residue and distinct membrane topologies impact the function of the infectious bronchitis coronavirus E protein. PLoS Pathogens. 2012 May;8(5):e1002674.
Key words: coronavirus, E protein, membrane topology, Golgi, virus release
http://www.ncbi.nlm.nih.gov/pubmed/22570613

1. Artemenko Y, Swaney K, Devreotes P.N. Assessment of development and chemotaxis in Dictyostelium discoideum mutants. Meth Mol Biol. 2011;769:287-309.
Key words: Multicellular development; differentiation; under buffer assay; cAR1; small population assay; micropipette assay; CMFDA labeling; PIP3 dynamics; actin
http://www.ncbi.nlm.nih.gov/pubmed/21748684

2. Burg JS, Espenshade PJ. Regulation of HMG-CoA reductase in mammals and yeast. Prog Lipid Res. 2011 Oct;50(4):403-10.
Key words: cholesterol; yeast; HMG-CoA reductase; statin
http://www.ncbi.nlm.nih.gov/pubmed/21801748

3. Burg JS, Espenshade PJ. Glucose controls phosphoregulation of HMG-CoA reductase through the PP2A-related phosphatase Ppe1 and Insig in fission yeast. J Biol Chem. 2011 Aug 5;286(31):27139-46.
Key words: cholesterol; yeast; HMG-CoA reductase; statin; phosphatase
http://www.ncbi.nlm.nih.gov/pubmed/21680738

4. Cai H, Huang CH, Devreotes PN, Iijima M. Analysis of chemotaxis in dictyostelium. Methods Mol Biol. 2011;757:451-468.
Key words: Dictyostelium; chemotaxis; intracellular signaling; cell migration
http://www.ncbi.nlm.nih.gov/pubmed/21909927

5. De Cuevas M, Matunis EL. The stem cell niche: lessons ftom the Drosophila testis. Development. 2011 July;138(14):2861-2869.
Key words: testis; stem cell; niche; spermatogenesis; Jak-Stat; germ cell
http://www.ncbi.nlm.nih.gov/pubmed/21693509

6. Gao RC, Zhang XD, Sun YH, Kamimura Y, Mogilner A, Devreotes PN, Zhao M. 2011. Different roles of Membrane potentials in electrotaxis and chemotaxis of Dictyostelium Cells. Eukaryot Cell. 2011 Sept;10(9):1251-1256.
Key words: Galvanotaxis; directed cell migration; PIP3; actin polymerization
http://www.ncbi.nlm.nih.gov/pubmed/21743003

7. Maruyama R, Grevengoed E, Stempniewicz P, Andrew DJ. Genome-wide analysis reveals a major role in cell fate maintenance and an unexpected role in endoreduplication for the Drosophila FoxA gene fork head. PLoS One 2011;6:e20901.
Key words: Drosophila; salivary gland; Fork head; FoxA; polytenization; endoreduplication; cell fate
http://www.ncbi.nlm.nih.gov/pubmed/21698206

8. Tang M, Iijima M, Devreotes PN. Generation of cells that ignore the effects of PIP3 on cytoskeleton. Cell Cycle. 2011 Sept 1;10(17).
Key words: PtdIns(3,4,5)P3; PKB/AKT; cell polarity; cytoskeletal reorganization
http://www.ncbi.nlm.nih.gov/pubmed/21869609

1. Cohen JR, Lin LD, Machamer CE. Identification of a Golgi targeting signal in the cytoplasmic tail of the severe acute respiratory syndrome coronavirus envelope protein. J Virol. 2011 June;85;5794-5803.
Key words: coronavirus E protein; Golgi membrane protein targeting; targeting signal
http://www.ncbi.nlm.nih.gov/pubmed/21450821

2. Rosado LA, Horn TA, McGrath SC, Cotter RJ, Yang JT. Association between ?4 integrin cytoplasmic tail and non-muscle myosin IIA regulates cell migration. J Cell Sci 2011;124:483-492.
Key words: intgrin; non-muscle myosin II; cell migration; cytoskeleton
http://www.ncbi.nlm.nih.gov/pubmed/21224395

3. Stewart EV, Nwosu CC, Tong Z, Roguev A, Cummins TD, Kim DU, Hayles J, Park HO, Hoe KL, Powell DW, Krogan NJ, Espenshade PJ. Yeast SREBP cleavage activation requires the Golgi Dsc E3 ligase complex. Mol. Cell. 2011 Apr 22;42:160-171.
Key words: yeast SREBP cleavage; Golgi Dsc; ligase complex
http://www.ncbi.nlm.nih.gov/pubmed/21504829

4. Yeh TL, Lee CSY, Amzel LM, Espenshade PJ, and Bianchet MB. The hypoxic regulator of sterol synthesis Nro1 is a nuclear import adaptor. Structure. 2011 Apr 13;19:503-14.
Key words: fission yeast protein Sre1; SREBP; low-oxygen growth
http://www.ncbi.nlm.nih.gov/pubmed/21481773

5. Zuckerman DM, Hicks SW, Charron G, Hang HC, Machamer CE. Differential re4gulation of two palmitoylation sites in the cytoplasmic tail of the beta-1 adrendergic receptor. J Biol Chem. 2011 May 27;286(21):1914-23.
Key words: S-palmitoylation, beta-1 adrenergic receptor, regulation, quantifying palmitoylation
http://www.ncbi.nlm.nih.gov/pubmed/21464135

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