September 2014

Cell Biology Archives

1. Kee YS, Robinson DN. Micropipette aspiration for studying cellular mechanosensory responses and mechanics. Methods Mol. Biol. 2013; 983:367-382.
Key words: cell mechanics, mechanosensing, methodology, micropipette aspiration, motorized water manometer design

2. Srivastava V, Robinson DN. Cytokinesis. In Lennarz & Lane (eds.) The Encyclopedia of Biological Chemistry, 2013; Waltham, MA: Academic Press. Vol. 3, pp. 622-626.
Key words: actin, cell division, cytoskeleton, cytokinesis, basic concepts, myosin II

1. Dintzis R, McBride J. Chapter 1. Anatomy, Embryology, and Histology, in The Urinary Tract, A Comprehensive Guide to Patient Diagnosis and Management, Editors Hansel DE, McKenney JK, Stephenson AJ , Chang SS. Springer, 2012.
Key words: urinary tract, diagnosis, kidney

2. Robinson DN, Iglesias PA. Bringing the physical sciences into your cell biology research. Mol Biol Cell 2012 Nov;23(21):4167-4170.
Key words: cell biology research, collaboration, computational modeling, intedisciplinary research, physical science

1. Artemenko Y, Batsios P, Borleis J, Gagnon Z, Lee J, Rohlfs M, Sanséau D, Willard SS, Schleicher M, Devreotes PN. Tumor suppressor Hippo/MST1 kinase mediates chemotaxis by regulating spreading and adhesion. PNAS. 2012;109(34):13632-13637.
Key words: KrsB, adhesion, chemotaxis, motility, phosphorylation

2. Becker PM, Tran TS, Delannoy MJ, He C, Shannon JM, McGrath-Morrow S. Semaphorin 3A contributes to distal pulmonary epithelial cell differentiation and lung morphogenesis. PLoS One. 2011;6(11):e27449.
Key words: TEM of lung tissue, glycogen accumulation, alveoli

3. Dickinson D, Robinson DN, Nelson WJ, Weis WI. alpha-catenin and IQGAP regulate myosin localization to control epithelial tube morphogenesis in Dictyostelium. Dev Cell 2012; 23:533-546.
Key words: epithelial tubes, myosin II, alpha catenin, IQGAP, cell polarity, tissue morphogenesis

4. Lukyanenko V, Malyukova I, Hubbard A, Delannoy M, Boedeker E, Zhu C, Cebotaru L, Kovbasnjuk O. Enterohemorrhagic Escherichia coli infection stimulates Shiga toxin 1 macropinocytosis and transcytosis across intestinal epithelial cells. Am J Physiol Cell Physiol. 2011;301:C1140-1149.
Key words:TEM and SEM small intestine, E. coli infection, toxic bacterial infection

5. Nucifora LG, Burke KA, Feng X, Arbez N, Zhu S, Miller J, Yang G, Ratovitski T, Delannoy M, Muchowski PJ, Finkbeiner S, Legleiter J, Ross CA, Poirier MA. Identification of novel potentially toxic oligomers formed in vitro from mammalian-derived expanded huntingtin exon-1 protein. J Biol Chem;2012:287:16017-16028.
Key words: Negative stained electron microscopy, huntingins disease, fiber formation and aggregation

6. Porter JR, Lee CY, Espenshade PJ, Iglesias PA. Regulation of SREBP during hypoxia requires Ofd1-mediated control of both DNA binding and degradation. Mol Biol Cell 2012;23:3764-3774.
Key words: SREBP, hypoxia, yeast, prolyl hydroxylase

7. Raychaudhuri S, Young BP, Espenshade PJ, Loewen CJ. Regulation of lipid metabolism: a tale of two yeasts. Curr Opin Cell Biol 2012;24:502-508.
Key words: lipid metabolism, SREBP, yeast

8. Yan Z, Delannoy M, Ling C, Daee D, Osman F, Muniandy PA, Shen X, Oostra AB, Du H, Steltenpool J, Lin T, Schuster B, Décaillet C, Stasiak A, Stasiak AZ, Stone S, Hoatlin ME, Schindler D, Woodcock CL, Joenje H, Sen R, de Winter JP, Li L, Seidman MM, Whitby MC, Myung K, Constantinou A, Wang W. A histone-fold complex and FANCM form a conserved DNA-remodeling complex to maintain genome stability. Mol Cell 2010;37:865-878.
Key words: Confocal microscopy, DNA, histones

1. Ewald AJ, Huebner RJ, Palsdottir H, Lee JK, Perez MJ, Jorgens DM, Tauscher AN, Cheung KJ, Werb Z, Auer M. Mammary collective cell migration involves transient loss of epithelial features and individual cell migration within the epithelium. J Cell Sci. 2012 June 1;125(pt11):2638-2654.
Key words: Collective cell migration, apico-basal polarity, epithelial development, branching morphogenesis

2. Issigonis M, Matunis E. The Drosophila BCL6 homolog ken and barbie promotes somatic stem cell self-renewal in the testis niche. Dev Bio. 2012 Aug 15;368(2):181-192.
Key words: ken and barbie; Drosophila JAK-STAT; Stem cell; Niche

3. Ryan CJ, Roguev A, Patrick K, Xu J, Jahari H, Tong Z, Beltrao P, Shales M, Qu H, Collins SR, Kliegman, JI, Jiang L, Kuo D, Tosti E, Kim H, Edelmann W, Keogh M, Greene D, Tang C, Cunningham P, Shokat KM, Cagney G, Svensson JP, Guthrie C, Espenshade PJ, Ideker T, Krogan NJ. Hierarchical modularity and the evolution of genetic interactomes across species. Mol. Cell. 2012 Jun 8;46(5):691-704.
Key words: E-map, genetic interactions, yeast, evolution, networks

4. Sidhaye VK, Chau E, Srivastava V, Sirimalle S, Balabhadrapatruni C, Aggarwal NR, D'Alessio FR, Robinson DN, King LS. A novel role for aquaporin-5 in enhancing microtubule organization and stability. PLoS ONE. 2012;7(6):e38717
Key words: Aquaporin-5, Lung epithelia, Mechanosensing, Microtubules, Shear stress

1. Mohan K, Iglesias PA, Robinson DN. Separation anxiety; stress, tension, and cytokinesis. Exp. Cell Res. 2012 Jul 15;318(12):1428-34.
Key words: Actin dynamics, Cell division, Cell mechanics, Cleavate furrow, Mechanosensation, Myosin II

2. Ruch TR, Machamer CE. A single polar residue and distinct membrane topologies impact the function of the infectious bronchitis coronavirus E protein. PLoS Pathogens. 2012 May;8(5):e1002674.
Key words: coronavirus, E protein, membrane topology, Golgi, virus release

1. Chandran S, Machamer CE. Inactivation of ceramide transfer protein during proapoptotic stress by Golgi disassembly and caspase cleavage. Biochem J. 2012 Mar 1;442(2):391-401.
Key words: Golgi, ceramide, sphingomyelin, caspase-2

2. Iglesias PA, Devreotes PN. Biased excitable networks: how cells direct motion in response to gradients. Curr Opin Cell Biol 2012 Apr;24(2):245-53.
Key words: reaction diffusion; cell motility; chemotaxis

3. Kee YS, Ren Y, Dorfman D, Iijima M, Firtel RA, Iglesias PA, Robinson DN. A mechanosensory system governs myosin II accumulation in dividing cells. Mol Biol Cell. 2012 April;23(8):1510-1523.
Key words: control system, cortexillin, feedback, INCENP, kinesin-6, microtubule, myosin II, IQGAP, rac

4. Miyamoto T, Derose R, Suarez A, Ueno T, Chen M, Sun TP, Wolfgang MJ, Mukherjee C, Meyers DJ, Inoue T. Rapid and orthogonal logic gating with a gibberellin-induced dimerization system. Nat Chem Biol. 2012 Mar 25;8(5):465-70.
Key words: synthetic cell biology; novel chemical dimerizers; intracellular logic gates

5. Nakasone ES, Askautrud HA, Kees T, Park JH, Plaks V, Ewald AJ, Fein M, Rasch MG, Tan YX, Qiu J, Park J, Sinha P, Bissell MJ, Frengen E, Werb Z, Egeblad M. Imaging tumor-stroma interactions during chemotherapy reveals contributions of the microenvironment to resistance. Cancer Cell. 2012 April 17;21(4):488-503.
Key words: tumor microenvironment, breast cancer, chemoresistance, intravital imaging

6. Porter JR, Burg JS, Espenshade PJ, Iglesias PA. Identifying a static nonlinear structure in a biological system using noisy, sparse data. J Theoretical Biol. 2012 May 7;300:232-41.
Key words: mathematical modeling, SREBP, hypoxia, cholesterol

7. Robinson DN, Kee Y-S, Luo T, Surcel A. Understanding how dividing cells change shape. In Comprehensive Biophysics, Egelman EH (ed.); Elsevier, Amsterdam. 2012; Vol. 7, pp. 48-72.
Key words: cell mechanics, myosin II, actin filaments, cytokinesis, control system

8. Rogers AB, Dintzis RZ. Liver and Gallbladder in Comparative Anatomy and Histology, A Mouse and Human Atlas. (Editors Piper M. Treuting and Suzanne M. Dintzis, Elseviers), UK and USA, 2012; Chapter 13, pgs. 193-199.
Key words: liver, gallbladder, anatomy

9. Ruch TR, Machamer CE. A single polar residue and distinct membrane topologies impact the function of the infectious bronchitis coronavirus E protein. PLoS Pathogens. 2012 May;8(5):e1002674.
Key words: coronavirus, E protein, membrane topology, Golgi, virus release

1. Artemenko Y, Swaney K, Devreotes P.N. Assessment of development and chemotaxis in Dictyostelium discoideum mutants. Meth Mol Biol. 2011;769:287-309.
Key words: Multicellular development; differentiation; under buffer assay; cAR1; small population assay; micropipette assay; CMFDA labeling; PIP3 dynamics; actin

2. Burg JS, Espenshade PJ. Regulation of HMG-CoA reductase in mammals and yeast. Prog Lipid Res. 2011 Oct;50(4):403-10.
Key words: cholesterol; yeast; HMG-CoA reductase; statin

3. Burg JS, Espenshade PJ. Glucose controls phosphoregulation of HMG-CoA reductase through the PP2A-related phosphatase Ppe1 and Insig in fission yeast. J Biol Chem. 2011 Aug 5;286(31):27139-46.
Key words: cholesterol; yeast; HMG-CoA reductase; statin; phosphatase

4. Cai H, Huang CH, Devreotes PN, Iijima M. Analysis of chemotaxis in dictyostelium. Methods Mol Biol. 2011;757:451-468.
Key words: Dictyostelium; chemotaxis; intracellular signaling; cell migration

5. De Cuevas M, Matunis EL. The stem cell niche: lessons ftom the Drosophila testis. Development. 2011 July;138(14):2861-2869.
Key words: testis; stem cell; niche; spermatogenesis; Jak-Stat; germ cell

6. Gao RC, Zhang XD, Sun YH, Kamimura Y, Mogilner A, Devreotes PN, Zhao M. 2011. Different roles of Membrane potentials in electrotaxis and chemotaxis of Dictyostelium Cells. Eukaryot Cell. 2011 Sept;10(9):1251-1256.
Key words: Galvanotaxis; directed cell migration; PIP3; actin polymerization

7. Maruyama R, Grevengoed E, Stempniewicz P, Andrew DJ. Genome-wide analysis reveals a major role in cell fate maintenance and an unexpected role in endoreduplication for the Drosophila FoxA gene fork head. PLoS One 2011;6:e20901.
Key words: Drosophila; salivary gland; Fork head; FoxA; polytenization; endoreduplication; cell fate

8. Tang M, Iijima M, Devreotes PN. Generation of cells that ignore the effects of PIP3 on cytoskeleton. Cell Cycle. 2011 Sept 1;10(17).
Key words: PtdIns(3,4,5)P3; PKB/AKT; cell polarity; cytoskeletal reorganization

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September 2014 articles:
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Microsoft Faculty Research Fellowship for 2015
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