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Biophysics and Biophysical Chemistry Archives 1. Chufán EE,
De M, Eipper BA, Mains RE, Amzel LM. Amidation of bioactive peptides: 2. Fitzsimmons D, Lukin K, Lutz R, Garvie CW,
Wolberger C, Hagman J. Highly cooperative recruitment of Ets-1 and release
of autoinhibition by Pax5. J Mol Biol. 2009 Sep 18;392(2):452-64. 3. Qiu C, Tarrant MK, Boronina T, Longo PA, Kavran
JM, Cole RN, Cole PA, Leahy DJ. In 1. Chung S, Parker JB, Bianchet M, Amzel LM, Stivers
JT. Impact of linker strain and 2. Hensel Z, Xiao J. A mechanism for stochastic
decision making by bacteria. Chembiochem. 2009 Apr 17;10(6):974-6. 1. Acker MG, Shin BS, Nanda JS, Saini AK, Dever
TE, Lorsch JR. Kinetic analysis of latesteps of eukaryotic translation
initiation. J Mol Biol. 2009 Jan 16;385(2):491-506. Epub 2008 Oct 19. 2. Messing SJ, Gabelli SB, Liu Q, Celesnik H,
Belasco JG, Piñeiro SA, Amzel LM. Structure and biological function
of the RNA Pyrophosphohydrolase BdRppH from Bdellovibrio bacteriovorus.
Structure 2009 Mar 11;17(3):472-81. 3. Mustafa AK, van Rossum DB, Patterson RL, Maag
D, Ehmsen JT, Gazi SK, Chakraborty A, Barrow RK, Amzel LM, Snyder SH.
Glutamatergic regulation of serine racemase via reversal of PIP2 inhibition.
Proc Natl Acad Sci U S A. 2009 Feb 24;106(8):2921-6. 4. Shin BS, Kim JR, Acker MG, Maher KN, Lorsch
JR, Dever TE. rRNA suppressor of a eukaryotic translation initiation
factor 5B/initiation factor 2 mutant reveals a binding site for translational
GTPases on the small ribosomal subunit. Mol Cell Biol. 2009 Feb;29(3):808-21.
Key words: RNA, ribosomes, proteins 5. Wang T, Yin L, Cooper EM, Lai MY, Dickey S,
Pickart CM, Fushman D, Wilkinson KD, Cohen RE, Wolberger C. Evidence
for bidentate substrate binding as the basis for the K48 linkage specificity
of otubain 1. J Mol Biol. 2009 Mar 6;386(4):1011-23. 1. Norris A, Bianchet MA, Boeke JD. Compensatory
interactions between Sir3p and the nucleosomal LRS surface imply their
direct interaction. PLoS Genet. 2008 Dec;4(12):e1000301. 1. Steyert SR, Messing SAJ, Amzel LM, Gabelli SB,
Piñeiro SA. Identification of Bdellovibrio bacteriovorus HD100
Bd0714 as a Nudix dGTPase. J Bacteriol. 2008 Dec;190(24):8215-9 1. Hawse WF, Hoff KG, Fatkins DG, Daines A, Zubkova
OV, Schramm VL, Zheng W, Wolberger C. Structural insights into intermediate
steps in the Sir2 deacetylation reaction. Structure. 2008 Sep 10;16(9):1368-77. 2. McLellan JS, Zheng X, Hauk G, Ghirlando R, Beachy
PA, Leahy DJ. The mode of Hedgehog binding to Ihog homologues is not conserved
across different phyla. Nature, 14 Sep 2008, Letter. 1. Bacha U, Barrila J, Gabelli SB , Kiso Y, Amzel
LM and Freire E. Development of broad-spectrum halomethyl ketone inhibitors
against coronavirus main protease 3CL(pro). Chem Biol Drug Des. 2008 Jul;72(1):34-49.
2. Dong J, Nanda JS, Rahman H, Pruitt MR, Shin B-S,
Wong C-M, Lorsch JR ,Hinnebusch AG. Genetic identification of yeast 18S
rRNA residues required for efficient recruitment of initiator tRNA(Met)
and AUG selection. Genes Dev. 2008 Aug 15;22(16):2242-55. 1. Acker MG, Lorsch JR. Mechanism of ribosomal subunit
joining during eukaryotic translation initiation. Biochem Soc Trans. 2008
Aug; 36(Pt 4):653-7. 1. Huang CH, Mandelker D, Gabelli SB, Amzel LM.
Insights into the oncogenic effects of /PIK3CA/ mutations from the structure
of p110alpha/p85alpha. Cell Cycle. 2008 May;7(9):1151-6. 2. Mori MX, Vander Kooi CW, Leahy DJ, Yue DT. Crystal
structure of the Ca(V)2 IQ domain in complex with Ca(2+)/calmodulin: high-resolution
mechanistic implications for channel regulation by Ca(2+). Structure.
2008 Apr;16(4):607-20. 1. Bianchet MA, Erdemli
SB, Amzel LM. Structure, function, and mechanism of cytosolic quinone
reductases.Vitam Horm. 2008;78:63-84. 2. Leahy, D. A molecular view of anti-ErbB
monoclonal antibody therapy. Cancer Cell. 2008 Apr;13(4):291-3. 3. Qiu C, Tarrant MK, Choi SH, Sathyamurthy
A, Bose R, Banjade S, Pal A, Bornmann WG, Lemmon MA, Cole PA, Leahy DJ.
Mechanism of activation and inhibition of the HER4/ErbB4 kinase. Structure.
2008 Mar;16(3):460-7. 4. Suh Y, Atzmon G, Cho MO, Hwang D, Liu B,
Leahy DJ, Barzilai N, Cohen P. Functionally significant insulin-like growth
factor I receptor mutations in centenarians. Proc Natl Acad Sci U S A.
2008 Mar 4;105(9):3438-42. Epub 2008 Mar 3. Key words: dioxygenases, ErbB2, phosphopeptide, peptides http://www.ncbi.nlm.nih.gov/pubmed/18045866?ordinalpos=1&itool=EntrezSystem2. PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum 1. Qiu C, Lienhard S, Hynes NE, Badache A, Leahy
DJ. Memo is homologous to nonheme iron dioxygenases and binds an ErbB2-derived
phosphopeptide in its vestigial active site. J Biol Chem. 2008 Feb 1;283(5):2734-40.
Epub 2007 Nov 28. 1. Acker MG, Kolitz SE, Mitchell SF, Nanda JS, Lorsch
JR. Reconstitution of yeast translation initiation. Methods Enzymol. 2007;430:111-45.
2. Huang GN, Huso DL, Bouyain S, Tu J, McCorkell
KA, May MJ, Zhu Y, Lutz M, Collins S, Dehoff M, Kang S, Whartenby K, Powell
J, Leahy D, Worley PF. NFAT binding and regulation of T cell activation
by the cytoplasmic scaffolding Homer proteins. Science. 2008 Jan 25;319(5862):476-81.
3. Xiao J, Elf J, Li G, Yu J, Xie XS, Imaging gene
expression in living cells at the single molecule level. Single Molecules:
A Laboratory Manual, edited by Selvin P., and Ta H. Dec. 2007, Cold Spring
Harbor Laboratory Press, Cold Spring Harbor, NY. 1. Dohán O, Portulano C, Basquin C, Reyna-Neyra
A, Amzel LM, Carrasco N. The Na+/I symporter (NIS) mediates electroneutral
active transport of the environmental pollutant perchlorate. Proc Natl
Acad Sci U S A. 2007 Dec 18;104(51):20250-5. 2. Huang CH, Mandelker D, Schmidt-Kittler O, Samuels
Y, Velculescu VE, Kinzler KW, Vogelstein B, Gabelli SB, Amzel LM. The
structure of a human p110alpha/p85alpha complex elucidates the effects
of oncogenic PI3Kalpha mutations. Science. 2007 Dec14; 318(5857): 3. Leahy DJ. A monkey wrench in the kinase machine.
Nat Struct Mol Biol. 2007 Dec;14(12):1120-1. 4. Qiu C, Lienhard S, Hynes NE, Badache A, Leahy
DJ. Memo is homologous to nonheme iron dioxygenases and binds an ErbB2-derived
phosphopeptide in its vestigial active site. J Biol Chem. 2007 Nov 28;
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