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Molecular Biology and Genetics Archives 1. Celic I,
Verreault A, Boeke JD. Histone H3 K56 hyperacetylation perturbs replisomes
and causes DNA damange. Genetics 2008 Aug; 179:1769-84. 2. Lin YY,
Qi Y, Lu JY, Pan X, Yuan DS, Zhao Y, Bader JS, Boeke JD. A comprehensive
synthetic genetic interaction network governing yeast histone acetylation
and deacetylation. Genes Dev. 2008 Aug 1;22(15):2062-74. 3. O'Donnell
KA, Burns KH, Boeke JD. A descent into the nuage: the maelstrom of transposon
control. Dev Cell. 2008 Aug;15(2):179-81. 4. Han Y,
Lin YB, An W, Xu J, Yang HC, O'Connell K, Dordai D, Boeke JD, Siliciano
JD, Siliciano RF. Orientation-dependent regulation of integrated HIV-1
expression by host gene transcriptional readthrough. Cell Host Microbe.
2008 Aug 14;4(2):134-46. 5. Scheifele
LZ, Boeke JD. From the shards of a shattered genome, diversity. Proc Natl
Acad Sci U S A. 2008 Aug 19;105(33):11593-4. 1. An W, Han
JS, Schrum CM, Maitra A, Koentgen F, Boeke JD. Conditional activation
of a single-copy L1 transgene in mice by Cre. Genesis 2008 Jul; 46(7):373-83. 2. Wheelan
SJ, Martinez Murillo F, Boeke JD. The incredible shrinking world of DNA
microarrays. Mol Biosyst. 2008 Jul; 4(7):726-32. 1. Cahill
H, Nathans J. The optokinetic reflex as a tool for quantitative analyses
of nervous system function in mice: application to genetic and drug-induced
variation. PLoS ONE 2008 Apr 30;3(4):e2055. 2. Liu C,
Wang Y, Smallwood PM, Nathans J. An essential role for Frizzled5 in neuronal
survival in the parafascicular nucleus of the thalamus. J Neurosci. 2008
May 28;28(22):5641-53. 1. Ben-Aroya
S, Coombes C, Kwok T, O'Donnell KA, Boeke JD, Hieter P. Toward a comprehensive
temperture-sensitive mutant respository of the essential genes of Saccharomyces
cerevisiae. Mol Cell. 2008 Apr 25; 30(2):248-58. 2. Li F, Dong
J, Pan X, Oum JH, Boeke JD, Lee SE. Microarray-based genetic screen defines
SAW1, a gene required for Rad1/Rad10-dependent processing of recombination
inermediates. Mol Cell. 2008 May 9; 30(3):325-35 3. Mitra R.
Fain-Thornton J, Craig NL. piggyBac can bypass DNA synthesis during cut
and paste transposition. EMBO J 2008 27(7):1097-1109. 4. Pan X,
Yuan D, Ye P, Bader J, Boeke JD. Response to Dr. Stephen Cooper's "On
the use of metaphor to understand, explain, or rationalize redundant genes
in yeast". FEMS Yeast Res. 2008 May; 8(3):349-350. 5. Urban S,
Shi Y. Core principles of intramembrane proteolysis: comparison of rhomboid
and site-2 family proteases. Curr Opin Struct Biol. 2008 Apr 25. [Epub
ahead of print] doi:10.1016/j.sbi.2008.03.005 1. O'Donnell KA,
Boeke JD. Domesticated DNA transposon proteins mediate retrotransposon
control. Cell Res. 2008 Mar; 18(3):331-3
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KH, Boeke JD. Great exaptations. J Biol 2008 Feb 15; 7(2):5. 2. Ghosh D, Seydoux G. Inhibition of transcription
by the Caenorhabditis elegans germline protein PIE-1: genetic evidence
for distinct mechanisms targeting initiation and elongation. Genetics.
2008 Jan;178(1):235-43. 3. Huang Z, Sucgang RS, Lin YY, Shi X, Boeke
JD, Pan X. Plasmid-chromosome shuffling for non-deletion alleles in yeast.
Nat Methods 2008 Feb; 5(2):167-9. 4. Marton
HA, Desiderio S. The Paf1 complex promotes displacement of histones upon
rapid induction of transcription by RNA polymerase II. BMC Mol Biol. 2008
Jan 14;9(1):4 1. Chen J,
Nathans J. Estrogen-related receptor beta/NR3B2 controls epithelial cell
fate and endolymph production by the stria vascularis. Dev Cell. 2007
Sep;13(3):325-37. 2. Sulek M, Yarrington R, McGibbon G, Boeke JD,
Junop M. A critical role for the C-terminus of Nej1 protein in Lif1p assocation,
DNA binding and non-homologous end-joining. DNA Repair (Amst). 2007 Dec
1;6(12):1805-18. 1. Dong J,
Feldman G, Huang J, Wu S, Zhang N, Comerford SA, Gayyed MF, Anders RA,
Maitra A, Pan D. Elucidation of a universal size-control mechanism in
Drosophila and mammals. Cell 2007 Sept 21; 130: 1120-1133. 2. Urban S. Rhomboid intramembrane serine proteases.
In: Proteases in Disease Volume 6: Intramembrane-Cleaving Proteases, Pages
51-78 (eds. Hooper, N.M. & Lendeckel, U.), Springer Press, New York,
2007. 3. Zurita-Martinez SA, Puria R, Pan X, Boeke
JD, Cardenas ME. Efficient Tor signaling requires a functional class C
Vps protein complex in Saccharomyces cerevisiae. Genetics 2007 Aug; 176(4):2139-2150.
1. Chen J,
Nathans J. Genetic ablation of cone photoreceptors eliminates retinal
folds in the retinal degeneration 7 (rd7) mouse. Invest Ophthalmol Vis
Sci. 2007 Jun;48(6):2799-805. 2. Zurita-Martinez SA, Puria R, Pan X, Boeke JD,
Cardenas ME. Efficient Tor signaling requires a functional Class C Vps
protein complex in saccharomyces cerevisiae. Genetics 2007 Aug;176(4):2139-50. 1. Stitzel ML, Seydoux
G. Regulation of the oocyte-to-zygote transition. Science. 2007 Apr 20;316(5823):407-8.
2. Yarrington RM, Chen J, Bolton EC, Boeke
JD. Mn2+ suppressor mutations and biochemical communication between Ty1
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analysis of a rhomboid intramembrane protease implicates transmembrane
helix 5 as the lateral substrate gate. Proc Natl Acad Sci U S A. 2007
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Bo J, Gonzalez GA, Chen EH. A critical function for the actin cytoskeleton
in targeted exocytosis of prefusion vesicles during myoblast fusion. Dev.
Cell 2007;12, 571-86. 4. O'Donnell KA, Boeke JD. Mighty Piwis defend the
germline against genome intruders. Cell 2007; 129:37-44. 5. Pan D. Hippo signaling in organ size control.
Genes Dev. 2007; 21: 886-897. 6. Yin F, Pan D. Fat flies expanded the hippo pathway:
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S, Meluh P, Boeke JD. dSLAM analysis of genome-wide genetic interactions
in Saccharomyces cerevisiae. Methods Feb; 41(2):206-21. 2. Jacobs GH, Williams GA, Cahill H, Nathans J.
Emergence of novel color vision in mice engineered to express a human
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in vertebrates: new insights and new questions. 1. An W, Han JS, Wheelan
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by a synthetic L1 element in mice. Proc Natl Acad Sci U S A. 2006 Dec
5;103(49):18662-7 2. Smallwood PM, Williams J, Xu Q, Leahy DJ, Nathans
J. Mutational analysis of Norrin-frizzled4 recognition. J Biol Chem. 2007
Feb 9;282(6):4057-68. 3. Wang Y, Badea T, Nathans J. Order from
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103:52 1. An W, Han JS, Wheelan SJ, Davis ES, Coombes CE,
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element in mice. Proc Natl Acad Sci U S A. 2006 Dec 5;103(49):18662-7. 2. Feldser D, Strong M, Greider CW. Ataxia telangiectasia
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telomeres. Proc. Natl. Acad. Sci. U.S.A. (2006) 103: 2249-2251. 3. Frank CJ, Hyde M., Greider CW. Regulation of
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Dec 6; [Epub ahead of print] 5. Wang Y, Badea T, Nathans J. Order from disorder:
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Genes Dev. 2006 Nov 15;20(22):3054-68. 2. Wu Z, Yan N, Feng L, Oberstein A, Yan H,
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3. Frank CJ, Hyde M, Greider CW. Regulation of telomere
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423-432. 4. Rattner A, Nathans J. Macular degeneration: recent
advances and therapeutic opportunities. Nat Rev Neurosci. 2006 Nov;7(11):860-72.
Epub 2006 Oct 11. 5. Wheelan SJ, Martinez-Murillo F, Irizarry RA,
Boeke JD. Stacking the deck: double-tiled DNA microarrays. Nat. Methods
2006 Nov; 3(11):903-907. 1. Arigo JT, Eyler DE,
Carroll KL and Corden JL. Termination of cryptic unstable transcripts
is directed by yeast RNA-binding proteins Nrd1 and Nab3. Mol Cell. 2006
Sep 15;23(6):841-51. 2. Blackburn EH, Greider CW, Szostak JW. Telomeres
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reporting false positives in large-scale RNAi screens. Nature Methods
2006 October 3; 777-779. 4. Fry CJ, Norris A, Cosgrove M, Boeke JD, Peterson
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Epub 2006 Aug 1. 1. Celic I, Masumoto H, Griffith WP, Meluh P, Cotter
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2006 May 24. 3. Suave AA, Wolberger C, Schramm VL, Boeke JD.
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Apr 1;292(1):244-52. 1. Richardson SM, Wheelan SJ, Yarrington RM, Boeke
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Chandrika KN, Mohan SS, Sharma S, Pinkert S, Nargaraju S, Periaswamy B,
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JD, Parmigiani G, Schultz J, Bader JS, Pandey A. Analysis of the human
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