Medical Scientist Training/MD-PhD Program

Publications

2014 | 2013 | 20122011 | 2010 | 2009 | 2008 | 2007

2014 (MD-PhD student bolded/italics)

Chivukula RR, Shi G, Acharya A, Mills EW, Zeitels LR, Anandam JL, Abdelnaby AA, Balch GC, Mansour JC, Yopp AC, Maitra A, Mendell JT. An Essential Mesenchymal Function for miR-143/145 in Intestinal Epithelial Regeneration. Cell. 2014 May 22;157(5):1104-16. doi: 10.1016/j.cell.2014.03.055. PubMed PMID: 24855947.

Boersma GJ, Moghadam AA, Cordner ZA, Tamashiro KL. Prenatal stress and stress coping style interact to predict metabolic risk in male rats. Endocrinology. 2014 Apr;155(4):1302-12. doi: 10.1210/en.2013-1874. Epub 2014 Jan 27. PubMed PMID: 24467745; PubMed Central PMCID: PMC3959611.

Reddy S, Khalifian S, Flores JM, Bellamy J, Manson PN, Rodriguez ED, Dorafshar AH. Clinical outcomes in cranioplasty: risk factors and choice of reconstructive material. Plast Reconstr Surg. 2014 Apr;133(4):864-73. doi: 10.1097/PRS.0000000000000013. PubMed PMID: 24675189.

Forrestel A, Peluso M, Dandu M, Fofana MO, Goodman M, Kron MA, Kulkarni A, Sussman N. “Overview and examples of curriculum structures and curriculum in action”. In: Evert J, Hall T (Eds). Global Health Curriculum Guidebook, 2nd Edition. Jan 2014.  San Francisco: Global Health Education Consortium.

Goodwin CR, Recinos PF, Zhou X, Yang JX, Jallo GI. Evaluation of complication rates of pediatric spinal procedures in which a polyethylene glycol sealant was used. J Neurosurg Pediatr. 2014 Mar;13(3):315-8. doi: 10.3171/2013.12.PEDS13456.  Epub 2014 Jan 10. PubMed PMID: 24410124.

Heikamp EB, Patel CH, Collins S, Waickman A, Oh MH, Sun IH, Illei P, Sharma A, Naray-Fejes-Toth A, Fejes-Toth G, Misra-Sen J, Horton MR, Powell JD. The AGC kinase SGK1 regulates TH1 and TH2 differentiation downstream of the mTORC2 complex. Nat Immunol. 2014 May;15(5):457-64. doi: 10.1038/ni.2867. Epub 2014 Apr  6. PubMed PMID: 24705297.

Johnson TV, Martin KR, Tomarev SI. Reply: Platelet-derived growth factor-BB may be involved in mesenchymal stem cell secretome-induced neuroprotection of retinal ganglion cells. Brain. 2014 May;137(Pt 5):e277. doi: 10.1093/brain/awu011. Epub 2014 Feb 14. PubMed PMID: 24531624.

Kacker S, Ness PM, Savage WJ, Frick KD, Shirey RS, King KE, Tobian AA. Economic evaluation of a hypothetical screening assay for alloimmunization risk among transfused patients with sickle cell disease. Transfusion. 2014 Feb 27. doi: 10.1111/trf.12585. [Epub ahead of print] PubMed PMID: 24571485.

Keenan BP, Saenger Y, Kafrouni MI, Leubner A, Lauer P, Maitra A, Rucki AA, Gunderson AJ, Coussens LM, Brockstedt DG, Dubensky TW Jr, Hassan R, Armstrong TD, Jaffee EM. A Listeria Vaccine and Depletion of T-regulatory Cells Activate Immunity Against Early-stage Pancreatic Intra-epithelial Neoplasms and Prolong Survival of Mice. Gastroenterology. 2014 Mar 6. pii: S0016-5085(14)00298-4. doi: 10.1053/j.gastro.2014.02.055. [Epub ahead of print] PubMed PMID: 24607504.

Bettegowda C, Sausen M, Leary RJ, Kinde I, Wang Y, Agrawal N, Bartlett BR, Wang H, Luber B, Alani RM, Antonarakis ES, Azad NS, Bardelli A, Brem H, Cameron JL, Lee CC, Fecher LA, Gallia GL, Gibbs P, Le D, Giuntoli RL, Goggins M, Hogarty MD, Holdhoff M, Hong SM, Jiao Y, Juhl HH, Kim JJ, Siravegna G, Laheru DA, Lauricella C, Lim M, Lipson EJ, Marie SK, Netto GJ, Oliner KS, Olivi A, Olsson L, Riggins GJ, Sartore-Bianchi A, Schmidt K, Shih lM, Oba-Shinjo SM, Siena S, Theodorescu D, Tie J, Harkins TT, Veronese S, Wang TL, Weingart JD, Wolfgang CL, Wood LD, Xing D, Hruban RH, Wu J, Allen PJ, Schmidt CM, Choti MA, Velculescu VE, Kinzler KW, Vogelstein B, Papadopoulos N, Diaz LA Jr. Detection of circulating tumor DNA in early- and late-stage human malignancies. Sci Transl Med. 2014 Feb 19;6(224):224ra24. doi: 10.1126/scitranslmed.3007094. PubMed PMID: 24553385; PubMed Central PMCID: PMC4017867.

Chivukula RR, Shi G, Acharya A, Mills EW, Zeitels LR, Anandam JL, Abdelnaby AA, Balch GC, Mansour JC, Yopp AC, Maitra A, Mendell JT. An Essential Mesenchymal Function for miR-143/145 in Intestinal Epithelial Regeneration. Cell. 2014 May 22;157(5):1104-16. doi: 10.1016/j.cell.2014.03.055. PubMed PMID: 24855947.

Brubaker SW, Gauthier AE, Mills EW, Ingolia NT, Kagan JC.  A bicistronic MAVS transcript highlights a class of truncated variants in antiviral immunity.  Cell. 2014 156:800-11. PMID 24529381.

Dasgupta I, Bollinger J, Mathews DJ, Neumann NM, Rattani A, Sugarman J. Patients’ Attitudes toward the Donation of Biological Materials for the Derivation of Induced Pluripotent Stem Cells. Cell Stem Cell. 2014 Jan 2;14(1):9-12. doi: 10.1016/j.stem.2013.12.006. PubMed PMID: 24388172.

Gupta N, Garonzik-Wang JM, Passarella RJ, Salter ML, Kucirka LM, Orandi BJ, Law AH, Segev DL. Assessment of resident and fellow knowledge of the organ donor referral process. Clin Transplant. 2014 Apr;28(4):443-9. doi: 10.1111/ctr.12338. Epub 2014 Mar 27. PubMed PMID: 24673146.

Nakhasi A, Shen AX, Passarella RJ, Appel LJ, Anderson CA. Online Social Networks That Connect Users to Physical Activity Partners: A Review and Descriptive Analysis. J Med Internet Res. 2014 Jun 16;16(6):e153. Review. PubMed  PMID: 24936569.

Perica K, Tu A, Richter A, Bieler JG, Edidin M, Schneck JP. Magnetic field-induced T cell receptor clustering by nanoparticles enhances T cell activation and stimulates antitumor activity. ACS Nano. 2014 Mar 25;8(3):2252-60. doi: 10.1021/nn405520d. Epub 2014 Feb 24. PubMed PMID: 24564881; PubMed Central PMCID: PMC4004316.

Laird GM, Eisele EE, Rabi SA, Nikolaeva D, Siliciano RF.  A novel cell-based high throughput screen for inhibitors of HIV-1 gene expression and budding identifies the cardiac glycosides. J Antimicrob Chemother.   2014 69:988-94. PMID24275119.

Palta P, Schneider AL, Biessels GJ, Touradji P, Hill-Briggs F.  Magnitude of cognitive dysfunction in adults with type 2 diabetes: a meta-analysis of six cognitive domains and the most frequently reported neuropsychological tests within domains.  J Int Neuropsychol Soc. 2014 20:278-91. PMID24555960.

Schneider AL, Rawlings AM, Sharrett AR, Alonso A, Mosley TH, Hoogeveen RC, Ballantyne CM, Gottesman RF, Selvin E.  High-sensitivity cardiac troponin T and cognitive function and dementia risk: the atherosclerosis risk in communities study.  Eur Heart J. 2014 Mar 30. [Epub ahead of print]  PMID24685712.

Sunshine JC, Perica K, Schneck JP, Green JJ. Particle shape dependence of CD8+ T cell activation by artificial antigen presenting cells. Biomaterials. 2014 35:269-77. PubMed PMID: 24099710; NIHMSID: 527452.

Prusevich P, Kalin JH, Ming SA, Basso M, Givens J, Li X, Hu J, Taylor MS, Cieniewicz AM, Hsiao PY, Huang R, Roberson H, Adejola N, Avery LB, Casero RA Jr, Taverna SD, Qian J, Tackett AJ, Ratan RR, McDonald OG, Feinberg AP, Cole PA. A Selective Phenelzine Analogue Inhibitor of Histone Demethylase LSD1. ACS Chem Biol. 2014 Apr 7. [Epub ahead of print] PubMed PMID: 24707965.

Rao F, Cha J, Xu J, Xu R, Vandiver MS, Tyagi R, Tokhunts R, Koldobskiy MA, Fu C, Barrow R, Wu M, Fiedler D, Barrow JC, Snyder SH. Inositol pyrophosphates mediate the DNA-PK/ATM-p53 cell death pathway by regulating CK2 phosphorylation of Tti1/Tel2. Mol Cell. 2014 Mar 18. pii: S1097-2765(14)00165-8. PMID24657168.

Paul BD, Sbodio JI, Xu R, Vandiver MS, Cha J, Snowman AM, Snyder SH. Cystathionine γ-lyase deficiency mediates neurodegeneration in Huntington’s Disease. Nature 2014 doi: 10.1038/nature13136. [Epub ahead of print] PMID24670645.

Choi JE, Vaswani PA, Shadmehr R. Vigor of movements and the cost of time in decision making. J Neurosci. 2014 Jan 22;34(4):1212-23. doi: 10.1523/JNEUROSCI.2798-13.2014. PubMed PMID: 24453313; PubMed Central PMCID: PMC3898284.

Bettegowda C, Sausen M, Leary RJ, Kinde I, Wang Y, Agrawal N, Bartlett BR, Wang H, Luber B, Alani RM, Antonarakis ES, Azad NS, Bardelli A, Brem H, Cameron JL, Lee CC, Fecher LA, Gallia GL, Gibbs P, Le D, Giuntoli RL, Goggins M, Hogarty MD, Holdhoff M, Hong SM, Jiao Y, Juhl HH, Kim JJ, Siravegna G, Laheru DA, Lauricella C, Lim M, Lipson EJ, Marie SK, Netto GJ, Oliner KS, Olivi A, Olsson L, Riggins GJ, Sartore-Bianchi A, Schmidt K, Shih lM, Oba-Shinjo SM, Siena S, Theodorescu D, Tie J, Harkins TT, Veronese S, Wang TL, Weingart JD, Wolfgang CL, Wood LD, Xing D, Hruban RH, Wu J, Allen PJ, Schmidt CM, Choti MA, Velculescu VE, Kinzler KW, Vogelstein B, Papadopoulos N, Diaz LA Jr. Detection of circulating tumor DNA in early- and late-stage human malignancies. Sci Transl Med. 2014 Feb 19;6(224):224ra24. doi: 10.1126/scitranslmed.3007094. PubMed PMID: 24553385; PubMed Central PMCID: PMC4017867.

Bydon M, Xu R, Santiago-Dieppa D, Macki M, Sciubba DM, Wolinsky JP, Bydon A, Gokaslan ZL, Witham TF.  Adjacent-segment disease in 511 cases of posterolateral instrumented lumbar arthrodesis: floating fusion versus distal construct including the sacrum.  J Neurosurg Spine. 2014 20:380-6. PMID24484304.

Bydon M, Xu R, Amin AG, Macki M, Kaloostian P, Sciubba DM, Wolinsky JP, Bydon  A, Gokaslan ZL, Witham TF. Safety and efficacy of pedicle screw placement using intraoperative computed tomography: consecutive series of 1148 pedicle screws. J  Neurosurg Spine. 2014 Jun 13:1-9. [Epub ahead of print] PubMed PMID: 24926927.

Bydon M, Macki M, Xu R, Ain MC, Ahn ES, Jallo GI. Spinal Decompression in Achondroplastic Patients Using High-Speed Drill Versus Ultrasonic Bone Curette: Technical Note and Outcomes in 30 Cases. J Pediatr Orthop. 2014 May 19. [Epub ahead of print] PubMed PMID: 24840655.

Santiago-Dieppa D, Bydon M, Xu R, De la Garza-Ramos R, Henry R, Sciubba DM, Wolinsky JP, Bydon A, Gokaslan ZL, Witham TF. Long-term outcomes after non-instrumented lumbar arthrodesis. J Clin Neurosci. 2014 May 12. pii: S0967-5868(14)00099-X. doi: 10.1016/j.jocn.2014.02.010. [Epub ahead of print] PubMed PMID: 24831342.

Paul BD, Sbodio JI, Xu R, Vandiver MS, Cha JY, Snowman AM, Snyder SH. Cystathionine γ-lyase deficiency mediates neurodegeneration in Huntington’s disease. Nature. 2014 May 1;509(7498):96-100. doi:  10.1038/nature13136. Epub 2014 Mar 26. PubMed PMID: 24670645.

Rao F, Cha J, Xu J, Xu R, Vandiver MS, Tyagi R, Tokhunts R, Koldobskiy MA, Fu C, Barrow R, Wu M, Fiedler D, Barrow JC, Snyder SH. Inositol pyrophosphates mediate the DNA-PK/ATM-p53 cell death pathway by regulating CK2 phosphorylation of Tti1/Tel2. Mol Cell. 2014 Apr 10;54(1):119-32. doi: 10.1016/j.molcel.2014.02.020. Epub 2014 Mar 20. PubMed PMID: 24657168; PubMed Central PMCID: PMC4011022.

Bydon M, Xu R, De la Garza-Ramos R, Macki M, Sciubba DM, Wolinsky JP, Witham TF, Gokaslan ZL, Bydon A. Adjacent segment disease after anterior cervical discectomy and fusion: Incidence and clinical outcomes of patients requiring anterior versus posterior repeat cervical fusion. Surg Neurol Int. 2014 Apr 16;5(Suppl 3):S74-8. doi: 10.4103/2152-7806.130676. eCollection 2014. PubMed PMID: 24843815; PubMed Central PMCID: PMC4022999.

Bydon M, Ma TM, Xu R, Weingart J, Olivi A, Gokaslan ZL, Tamargo R, Brem H, Bydon A. Surgical management of craniocervial junction meningiomas: A series of 22 consecutive patients. Clinical Neurology and Neurosurgery. Clin Neurol Neurosurg. 2014 117:71-9. PMID 24438809.

Chivukula RR, Shi G, Acharya A, Mills EW, Zeitels LR, Anandam JL, Abdelnaby AA, Balch GC, Mansour JC, Yopp AC, Maitra A, Mendell JT. An Essential Mesenchymal Function for miR-143/145 in Intestinal Epithelial Regeneration. Cell. 2014 May 22;157(5):1104-16. doi: 10.1016/j.cell.2014.03.055. PubMed PMID: 24855947.

2013 (MD-PhD student bolded/italics)

Haffner MC, Mosbruger T, Esopi DM, Fedor H, Heaphy CM, Walker DA, Adejola N, Gürel M, Hicks J, Meeker AK, Halushka MK, Simons JW, Isaacs WB, De Marzo AM, Nelson WG, Yegnasubramanian S. Tracking the clonal origin of lethal prostate cancer. J Clin Invest. 2013 Nov 1;123(11):4918-22. doi: 10.1172/JCI70354. Epub 2013 Oct 25. PubMed PMID: 24135135; PubMed Central PMCID: PMC3809798.

Xu R, Paul BD, Smith DR, Tyagi R, Rao F, Khan AB, Blech DJ, Vandiver MS, Harraz MM, Guha P, Ahmed I, Sen N, Gallagher M, Snyder SH. Inositol polyphosphate multikinase is a transcriptional coactivator required for immediate early gene induction. Proc Natl Acad Sci U S A. 2013 Oct 1;110(40):16181-6. doi: 10.1073/pnas.1315551110. Epub 2013 Sep 16. PubMed PMID: 24043835; PubMed Central PMCID: PMC3791727.

Hubbi ME, Hu H, Kshitiz, Ahmed I, Levchenko A, Semenza GL. Chaperone-mediated autophagy targets hypoxia-inducible factor-1α (HIF-1α) for lysosomal degradation. J Biol Chem. 2013 Apr 12;288(15):10703-14. doi: 10.1074/jbc.M112.414771. Epub 2013 Mar 1. PubMed PMID: 23457305; PubMed Central PMCID: PMC3624450.

Anidi IU, Servinsky LE, Rentsendorj O, Stephens RS, Scott AL, Pearse DB. CD36 and Fyn Kinase Mediate Malaria-Induced Lung Endothelial Barrier Dysfunction in Mice Infected with Plasmodium berghei. PLoS One. 2013 Aug 15;8(8):e71010. doi: 10.1371/journal.pone.0071010. PubMed PMID: 23967147; PubMed Central PMCID: PMC3744507.

Boone C, Anderson WS Virtual taxi drivers: Network interactions underlying memory retrieval.  Neurosurgery 2013 73:N16–N17. (News and Views article).  PMID24257340 .

Cashman CR, Lazzerini Ospri L. Induced pluripotent stem cells and motor neuron disease: toward an era of individualized medicine. J Neurosci. 2013 May 15;33(20):8587-9. doi:  10.1523/JNEUROSCI.1062-13.2013. PubMed PMID: 23678103.

Simonsen L, Spreeuwenberg P, Lustig R, Taylor RJ, Fleming DM, Kroneman M, Van  Kerkhove MD, Mounts AW, Paget WJ; GLaMOR Collaborating Teams. (Charu V)Global mortality estimates for the 2009 Influenza Pandemic from the GLaMOR project: a modeling study. PLoS Med. 2013 Nov;10(11):e1001558. doi: 10.1371/journal.pmed.1001558. Epub 2013 Nov 26. PubMed PMID: 24302890; PubMed Central PMCID: PMC3841239.

Charu V, Simonsen L, Lustig R, Steiner C, Viboud C. Mortality burden of the 2009-10 influenza pandemic in the United States: improving the timeliness of influenza severity estimates using inpatient mortality records. Influenza Other Respi Viruses. 2013 Sep;7(5):863-71. doi: 10.1111/irv.12096. Epub 2013 Feb 19. PubMed PMID: 23419002; PubMed Central PMCID: PMC3674131.

Bloom-Feshbach K, Alonso WJ, Charu V, Tamerius J, Simonsen L, Miller MA, Viboud C. Latitudinal variations in seasonal activity of influenza and respiratory syncytial virus (RSV): a global comparative review. PLoS One. 2013;8(2):e54445. doi: 10.1371/journal.pone.0054445. Epub 2013 Feb 14. PubMed PMID: 23457451; PubMed Central PMCID: PMC3573019.

Quandelacy TM, Viboud C, Charu V, Lipsitch M, Goldstein E. Age- and sex-related risk factors for influenza-associated mortality in the United States between 1997-2007. Am J Epidemiol. 2014 Jan 15;179(2):156-67. doi: 10.1093/aje/kwt235. Epub 2013 Nov 4. PubMed PMID: 24190951; PubMed Central PMCID: PMC3873104.

Royo H, Prosser H, Ruzankina Y, Mahadevaiah SK, Cloutier JM, Baumann M, Fukuda T, Höög C, Tóth A, de Rooij DG, Bradley A, Brown EJ, Turner JM. ATR acts stage specifically to regulate multiple aspects of mammalian meiotic silencing. Genes Dev. 2013 Jul 1;27(13):1484-94. doi: 10.1101/gad.219477.113. PubMed PMID: 23824539; PubMed Central PMCID: PMC3713429.

Boersma GJ, Lee RS, Cordner ZA, Ewald ER, Purcell RH, Moghadam AA, Tamashiro KL. Prenatal stress decreases Bdnf expression and increases methylation of Bdnf exon IV in rats. Epigenetics. 2014 Mar;9(3):437-47. doi: 10.4161/epi.27558. Epub 2013 Dec 23. PubMed PMID: 24365909; PubMed Central PMCID: PMC4053462.

Cottrell TR, Rosen A. Mechanisms of autoimmunity. In: Rich R, Fleisher T, William S, Schroeder H, Frew A, Weyand C, editors. Clinical Immunology: Principles and Practice (4th edition); 2013. p. 587.

Cottrell TR, Wise RA, Wigley FM, Boin F. The degree of skin involvement identifies distinct lung disease outcomes and survival in systemic sclerosis. Ann Rheum Dis. 2013 Apr 20. [Epub ahead of print] PubMed PMID: 23606705.

Ehmsen JT, Ma TM, Sason H, Rosenberg D, Ogo T, Furuya S, Snyder SH, Wolosker H. D-serine in glia and neurons derives from 3-phosphoglycerate dehydrogenase. J Neurosci. 2013 Jul 24;33(30):12464-9. doi: 10.1523/JNEUROSCI.4914-12.2013. PubMed PMID: 23884950; PubMed Central PMCID: PMC3721849.

Engelhard C, Sarsfield S, Merte J, Wang Q, Li P, Beppu H, Kolodkin AL, Sucov HM, Ginty DD. MEGF8 is a modifier of BMP signaling in trigeminal sensory neurons. Elife. 2013 Sep 17;2:e01160. doi: 10.7554/eLife.01160. PubMed PMID: 24052814; PubMed Central PMCID: PMC3776557.

Addis RC, Ifkovits JL, Pinto F, Kellam LD, Esteso P, Rentschler S, Christoforou N, Epstein JA, Gearhart JD. Optimization of direct fibroblast reprogramming to cardiomyocytes using calcium activity as a functional measure of success. J Mol Cell Cardiol. 2013 Jul;60:97-106. doi: 10.1016/j.yjmcc.2013.04.004. Epub 2013 Apr 13. PubMed PMID: 23591016; PubMed Central PMCID: PMC3679282.

Sussman RT, Stanek TJ, Esteso P, Gearhart JD, Knudsen KE, McMahon SB. The epigenetic modifier Ubiquitin Specific Protease 22 (Usp22) regulates embryonic stem cell differentiation via transcriptional repression of Sex determining region Y-box 2 (Sox2). J Biol Chem. 2013 Jun 12. [Epub ahead of print] PubMed PMID: 23760504.

Knowlton A, Weir BW, Hazzard F, Olsen Y, McWilliams J, Fields J, Gaasch W. EMS runs for suspected opioid overdose: implications for surveillance and prevention. Prehosp Emerg Care. 2013 Jul-Sep;17(3):317-29. doi: 10.3109/10903127.2013.792888. PubMed PMID: 23734988; PubMed Central PMCID: PMC3682796.

Knowlton A, Weir BW, Hughes BS, Southerland RJ, Schultz CW, Sarpatwari R, Wissow L, Links J, Fields J, McWilliams J, Gaasch W. Patient demographic and health factors associated with frequent use of emergency medical services in a midsized city. Acad Emerg Med. 2013 Nov;20(11):1101-11. doi: 10.1111/acem.12253.  PubMed PMID: 24238312.

Bellamy JL, Mundinger GS, Flores JM, Reddy SK, Mithani SK, Rodriguez ED, Dorafshar AH. Facial fractures of the upper craniofacial skeleton predict mortality and occult intracranial injury after blunt trauma: an analysis. J Craniofac Surg. 2013 Nov;24(6):1922-6. doi: 10.1097/SCS.0b013e3182a30544. PubMed PMID: 24220374.

Sarhane, Karim A. MD, MSc*; Flores, José M. MPH†; Cooney, Carisa M. MPH*; Abreu, Francis M. BS‡; Lacayo, Marcelo MD*; Baltodano, Pablo A. MD*; Ibrahim, Zuhaib MD*; Alrakan, Mohammed MD*; Brandacher, Gerald MD*; Rosson, Gedge D. MD*, Preoperative Anemia and Postoperative Outcomes in Immediate Breast Reconstructive Surgery: A Critical Analysis of 10,958 Patients from the ACS-NSQIP Database.  Plastic and Reconstructive Surgery – Global Open:  August 2013 – Volume 1 – Issue 5 – p e30 doi: 10.1097/GOX.0b013e3182a18c6f.

Bellamy JL, Molendijk J, Reddy SK, Flores JM, Mundinger GS, Manson PN, Rodriguez ED, Dorafshar AH. Severe infectious complications following frontal sinus fracture: the impact of operative delay and perioperative antibiotic use. Plast Reconstr Surg. 2013 Jul;132(1):154-62. doi: 10.1097/PRS.0b013e3182910b9b. PubMed PMID: 23806917.

Bellamy JL, Mundinger GS, Reddy SK, Flores JM, Rodriguez ED, Dorafshar AH. Le Fort II Fractures Are Associated With Death: A Comparison of Simple and Complex Midface Fractures. J Oral Maxillofac Surg. 2013 Sep;71(9):1556-62. doi: 10.1016/j.joms.2013.04.007. Epub 2013 Jul 15. PubMed PMID: 23866783.

Fofana MO. The spectre of race in American medicine. Med Humanit. 2013 Aug 29. doi: 10.1136/medhum-2013-010374. [Epub ahead of print] PubMed PMID: 23988563.

Fofana MO. 2012 winning essay. Virtual Mentor. 2013 Aug 1;15(8):653-9. doi: 10.1001/virtualmentor.2013.15.8.conl1-1308. PubMed PMID: 23937779.

Owens JP, Fofana MO, Dowdy DW. Cost-effectiveness of novel first-line treatment regimens for tuberculosis. Int J Tuberc Lung Dis. 2013 May;17(5):590-6. doi: 10.5588/ijtld.12.0776. PubMed PMID: 23575322.

Gerber EE, Gallo EM, Fontana SC, Davis EC, Wigley FM, Huso DL, Dietz HC. Integrin-modulating therapy prevents fibrosis and autoimmunity in mouse models of scleroderma. Nature. 2013 Nov 7;503(7474):126-30. doi: 10.1038/nature12614. Epub 2013 Oct 9. PubMed PMID: 24107997; PubMed Central PMCID: PMC3992987.

Gallo EM, Loch DC, Habashi JP, Calderon JF, Chen Y, Bedja D, van Erp C, Gerber EE, Parker SJ, Sauls K, Judge DP, Cooke SK, Lindsay ME, Rouf R, Myers L, ap Rhys CM, Kent KC, Norris RA, Huso DL, Dietz HC. Angiotensin II-dependent TGF-β signaling contributes to Loeys-Dietz syndrome vascular pathogenesis. J Clin Invest. 2014 Jan 2;124(1):448-60. doi: 10.1172/JCI69666. Epub 2013 Dec 20. PubMed PMID: 24355923; PubMed Central PMCID: PMC3871227.

Reid B, Gibson M, Singh A, Taube J, Furlong C, Murcia M, Elisseeff J. PEG hydrogel degradation and the role of the surrounding tissue environment. J Tissue Eng Regen Med. 2013 Mar 12. doi: 10.1002/term.1688. [Epub ahead of print] PubMed PMID: 23495204.

Gibson M, Li H, Coburn J, Moroni L, Nahas Z, Bingham C 3rd, Yarema K, Elisseeff J. Intra-articular delivery of glucosamine for treatment of experimental osteoarthritis created by a medial meniscectomy in a rat model. J Orthop Res. 2014 Feb;32(2):302-9. Epub 2013 Nov 5. PubMed PMID: 24600703.

Sharma B, Fermanian S, Gibson M, Unterman S, Herzka DA, Cascio B, Coburn J, Hui AY, Marcus N, Gold GE, Elisseeff JH. Human cartilage repair with a photoreactive adhesive-hydrogel composite. Sci Transl Med. 2013 Jan 9;5(167):167ra6. doi: 10.1126/scitranslmed.3004838. PubMed PMID: 23303605.

Tamma PD, Girdwood SC, Gopaul R, Tekle T, Roberts AA, Harris AD, Cosgrove SE,  Carroll KC. The Use of Cefepime for Treating AmpC β-lactamase Producing Enterobacteriaceae. Clin Infect Dis. 2013 Jun 11. [Epub ahead of print] PubMed PMID: 23759352.

Yilgor Huri P, Cook CA, Hutton DL, Goh BC, Gimble JM, Digirolamo DJ, Grayson WL. Biophysical cues enhance myogenesis of human adipose derived stem/stromal cells. Biochem Biophys Res Commun. 2013 Aug 16;438(1):180-5. doi: 10.1016/j.bbrc.2013.07.049. Epub 2013 Jul 20. PubMed PMID: 23876311.

Woodard CL, Goodwin CR, Wan J, Xia S, Newman R, Hu J, Zhang J, Hayward SD, Qian J, Laterra J, Zhu H. Profiling the dynamics of a human phosphorylome reveals new components in HGF/c-Met signaling. PLoS One. 2013 Sep 2;8(9):e72671. doi: 10.1371/journal.pone.0072671. eCollection 2013. PubMed PMID: 24023761; PubMed Central PMCID: PMC3759380.

Grishkan IV, Fairchild AN, Calabresi PA, Gocke AR.  1,25-Dihydroxyvitamin D3 selectively and reversibly impairs T helper-cell CNS localization.  Proc Natl Acad Sci USA. 2013 Epub ahead of print.  PMID24324134.

Grishkan IV, Ntranos A, Calabresi PA, Gocke AR. Helper T cells down-regulate CD4 expression upon chronic stimulation giving rise to double-negative T cells. Cell Immunol. 2013 Jul 2;284(1-2):68-74. doi: 10.1016/j.cellimm.2013.06.011. [Epub ahead of print] PubMed PMID: 23933188.

Powell JD, Heikamp EB, Pollizzi KN, Waickman AT. A Modified Model of T-Cell Differentiation Based on mTOR Activity and Metabolism. Cold Spring Harb Symp Quant Biol. 2013 Oct 7. [Epub ahead of print] PubMed PMID: 24100582; PubMed Central PMCID: PMC3979500.

Baker P, Moore C, Hopley L, Herzer K, Mark Lj. How do anaesthetists in New Zealand disseminate critical airway information? Anaesth Intensive Care. 2013 May;41(3):334-41. PubMed PMID: 23659395.

Herzer KR, Lim C, Li M, Xie Y, Doyle PA, Cover R, Mark LJ. Q-tip: from local quality improvement to national drug recall. Am J Med Qual. 2013 May-Jun;28(3):265. doi: 10.1177/1062860613478730. Epub 2013 Mar 18. PubMed PMID: 23508529.

Mayo-Wilson E, Imdad A, Herzer K, Bhutta ZA. Vitamin A supplementation in Indian children. Lancet. 2013 Aug 17;382(9892):594. doi: 10.1016/S0140-6736(13)61739-0. PubMed PMID: 23953382.

Herzer KR, Pronovost PJ. Motivating Physicians to Improve Quality: Light the Intrinsic Fire. Am J Med Qual. 2013 Nov 18. [Epub ahead of print] PubMed PMID: 24249836.

Cha JY, Kim HJ, Yu JH, Xu J, Kim D, Paul BD, Choi H, Kim S, Lee YJ, Ho GP, Rao F, Snyder SH, Kim JW. Dexras1 mediates glucocorticoid-associated adipogenesis and diet-induced obesity. Proc Natl Acad Sci U S A. 2013 Dec 17;110(51):20575-80. doi: 10.1073/pnas.1320454110. Epub 2013 Dec 2. PubMed PMID: 24297897; PubMed Central PMCID: PMC3870686.

Hubbi ME, Hu H, Kshitiz, Ahmed I, Levchenko A, Semenza GL. Chaperone-mediated autophagy targets hypoxia-inducible factor-1α (HIF-1α) for lysosomal degradation. J Biol Chem. 2013 Apr 12;288(15):10703-14. doi: 10.1074/jbc.M112.414771. Epub 2013 Mar 1. PubMed PMID: 23457305; PubMed Central PMCID: PMC3624450

Hubbi ME, Hu H, Kshitiz, Gilkes DM, Semenza GL. Sirtuin-7 Inhibits the Activity of Hypoxia-inducible Factors. J Biol Chem. 2013 Jul 19;288(29):20768-75. doi: 10.1074/jbc.M113.476903. Epub 2013 Jun 9. PubMed PMID: 23750001.

Gilkes DM, Chaturvedi P, Bajpai S, Wong CC, Wei H, Pitcairn S, Hubbi ME, Wirtz D, Semenza GL. Collagen prolyl hydroxylases are essential for breast cancer metastasis. Cancer Res. 2013 Jun 1;73(11):3285-96. doi: 10.1158/0008-5472.CAN-12-3963. Epub 2013 Mar 28. PubMed PMID: 23539444; PubMed Central PMCID: PMC3674184.

Hubbi ME, Hu H, Kshitiz, Ahmed I, Levchenko A, Semenza GL. Chaperone-mediated autophagy targets hypoxia-inducible factor-1α (HIF-1α) for lysosomal degradation. J Biol Chem. 2013 Apr 12;288(15):10703-14. doi: 10.1074/jbc.M112.414771. Epub 2013 Mar 1. PubMed PMID: 23457305; PubMed Central PMCID: PMC3624450.

Hubbi ME, Kshitiz, Gilkes DM, Rey S, Wong CC, Luo W, Kim DH, Dang CV, Levchenko A, Semenza GL. A nontranscriptional role for HIF-1α as a direct inhibitor of DNA replication. Sci Signal. 2013 Feb 12;6(262):ra10. doi: 10.1126/scisignal.2003417. PubMed PMID: 23405012.

Gilkes DM, Bajpai S, Wong CC, Chaturvedi P, Hubbi ME, Wirtz D, Semenza GL. Procollagen lysyl hydroxylase 2 is essential for hypoxia-induced breast cancer metastasis. Mol Cancer Res. 2013 May;11(5):456-66. doi: 10.1158/1541-7786.MCR-12-0629. Epub 2013 Feb 1. PubMed PMID: 23378577; PubMed Central PMCID: PMC3656974.

Johnson TV, DeKorver NW, Levasseur VA, Osborne A, Tassoni A, Lorber B, Heller  JP, Villasmil R, Bull ND, Martin KR, Tomarev SI. Identification of retinal ganglion cell neuroprotection conferred by platelet-derived growth factor through analysis of the mesenchymal stem cell secretome. Brain. 2014 Feb;137(Pt 2):503-19. doi: 10.1093/brain/awt292. Epub 2013 Oct 30. PubMed PMID: 24176979; PubMed Central PMCID: PMC3914467.

Kwon HS, Johnson TV, Tomarev SI. Myocilin stimulates osteogenic differentiation of mesenchymal stem cells through mitogen-activated protein kinase signaling. J Biol Chem. 2013 Jun 7;288(23):16882-94. doi: 10.1074/jbc.M112.422972. Epub 2013 Apr 29. PubMed PMID: 23629661; PubMed Central PMCID: PMC3675621.

Kwon HS, Johnson TV, Joe MK, Abu-Asab M, Zhang J, Chan CC, Tomarev SI. Myocilin mediates myelination in the peripheral nervous system through ErbB2/3 signaling. J Biol Chem. 2013 Sep 13;288(37):26357-71. doi: 10.1074/jbc.M112.446138. Epub 2013 Jul 29. PubMed PMID: 23897819; PubMed Central PMCID: PMC3772183.

Keenan B, Jaffee EM. Immunotherapy in preneoplastic disease: targeting early procarcinogenic inflammatory changes that lead to immune suppression and tumor tolerance. Ann N Y Acad Sci. 2013 May;1284(1):12-6. doi: 10.1111/nyas.12076. PubMed PMID: 23651188.

Keenan BP, Jaffee EM, Armstrong TD. Meeting Report: Tumor Immunology: Multidisciplinary Science Driving Basic and Clinical Advances. Cancer Immunol Res. 2013 Jul;1. doi: 10.1158/2326-6066.CIR-13-0011. PubMed PMID: 24409447; PubMed Central PMCID: PMC3882090.

Papadopoulos N, Kinde I, Munari E, Faraj SF, Hruban RH,Schoenberg MP, Bivalacqua T, Allaf ME, Springer S, Wang Y, Diaz LA Jr, Kinzler KW, Vogelstein B, Netto GJ. TERT promoter mutations occur early in urothelial neoplasia and are biomarkers of early disease and disease recurrence in urine. Cancer Res. 2013 Oct11;PubMed PMID: 24121487.

Kinde I, Bettegowda C, Wang Y, Wu J, Agrawal N, Shih IeM, Kurman R, Dao F, Levine DA, Giuntoli R, Roden R, Eshleman JR, Carvalho JP, Marie SK, Papadopoulos N, Kinzler KW, Vogelstein B, Diaz LA Jr. Evaluation of DNA from the Papanicolaou test to detect ovarian and endometrial cancers. Sci Transl Med. 2013 Jan 9;5(167):167ra4. doi: 10.1126/scitranslmed.3004952. PubMed PMID: 23303603.

Kinde I, Munari E, Faraj SF, Hruban RH, Schoenberg M, Bivalacqua T, Allaf M, Springer S, Wang Y, Diaz LA Jr, Kinzler KW, Vogelstein B, Papadopoulos N, Netto GJ. TERT promoter mutations occur early in urothelial neoplasia and are biomarkers of early disease and disease recurrence in urine. Cancer Res. 2013 Dec 15;73(24):7162-7. doi: 10.1158/0008-5472.CAN-13-2498. Epub 2013 Oct 11. PubMed PMID: 24121487; PubMed Central PMCID: PMC3966102.

Joseph CG, Darrah E, Shah AA, Skora AD, Casciola-Rosen LA, Wigley FM, Boin F, Fava A, Thoburn C, Kinde I, Jiao Y, Papadopoulos N, Kinzler KW, Vogelstein B, Rosen A. Association of the autoimmune disease scleroderma with an immunologic response to cancer. Science. 2014 Jan 10;343(6167):152-7. doi: 10.1126/science.1246886. Epub 2013 Dec 5. PubMed PMID: 24310608; PubMed Central PMCID: PMC4038033.

Chow EK, Massie AB, Muzaale AD, Singer AL, Kucirka LM, Montgomery RA, Lehmann HP, Segev DL. Identifying Appropriate Recipients for CDC Infectious Risk Donor Kidneys. Am J Transplant. 2013 May;13(5):1227-34. doi: 10.1111/ajt.12206. PubMed  PMID: 23621162.

Liu MM, Chan CC, Tuo J. Epigenetics in ocular diseases. Curr Genomics. 2013 May;14(3):166-72. doi: 10.2174/1389202911314030002. PubMed PMID: 24179439; PubMed Central PMCID: PMC3664466.

Liu MM, Zack DJ. Alternative splicing and retinal degeneration. Clin Genet. 2013 Aug;84(2):142-9. doi: 10.1111/cge.12181. Epub 2013 Jun 5. PubMed PMID: 23647439.

Lloyd SJ, Raychaudhuri S, Espenshade PJ. Subunit architecture of the Golgi Dsc E3 ligase required for sterol regulatory element-binding protein (SREBP) cleavage in fission yeast. J Biol Chem. 2013 Jul 19;288(29):21043-54. doi: 10.1074/jbc.M113.468215. Epub 2013 Jun 12. PubMed PMID: 23760507; PubMed Central PMCID: PMC3774371.

Kang TH, Mao CP, Lee SY, Chen A, Lee JH, Kim TW, Alvarez RD, Roden RB, Pardoll D, Hung CF, Wu TC. Chemotherapy acts as an adjuvant to convert the tumor microenvironment into a highly permissive state for vaccination-induced antitumor immunity. Cancer Res. 2013 Apr 15;73(8):2493-504. doi: 10.1158/0008-5472.CAN-12-4241. Epub 2013 Feb 15. PubMed PMID: 23418322; PubMed Central PMCID: PMC3630272.

Kang TH, Mao CP, La V, Chen A, Hung CF, Wu TC. Innovative DNA vaccine to break immune tolerance against tumor self-antigen. Hum Gene Ther. 2013 Feb;24(2):181-8. doi: 10.1089/hum.2012.141. Epub 2013 Jan 30. PubMed PMID: 23268564; PubMed Central PMCID: PMC3581028.

Reid B, Afzal JM, McCartney AM, Abraham MR, O’Rourke B, Elisseeff JH. Enhanced Tissue Production through Redox Control in Stem Cell-Laden Hydrogels. Tissue Eng  Part A. 2013 Sep;19(17-18):2014-23. doi: 10.1089/ten.TEA.2012.0515. Epub 2013 Jun 22. PubMed PMID: 23627869; PubMed Central PMCID: PMC3725795.

Mealer RG, Subramaniam S, Snyder SH. Rhes deletion is neuroprotective in the 3-nitropropionic acid model of Huntington’s disease. J Neurosci. 2013 Feb 27;33(9):4206-10. doi: 10.1523/JNEUROSCI.3730-12.2013. PubMed PMID: 23447628; PubMed Central PMCID: PMC3667505.

Qin L, Smith BD, Tsai HL, Yaghi NK, Neela PH, Moake M, Fu J, Yl K, Prince GT, Goswami M, Rosner GL, Levitsky HI, Hourigan CS. Induction of high-titer IgG antibodies against multiple leukemia-associated antigens in CML patients with clinical responses to K562/GVAX immunotherapy. Blood Cancer J. 2013 3:e145 doi: 10.1038/bcj.2013.44. PMID24013666; PMC3789208.

Montaño CM, Irizarry RA, Kaufmann WE, Talbot K, Gur RE, Feinberg AP, Taub MA.  Measuring cell-type specific differential methylation in human brain tissue. Genome Biol. 2013 Aug 30;14(8):R94. [Epub ahead of print] PubMed PMID: 24000956; PubMed Central PMCID: PMC4054676.

Morris M, Hamto P, Adame A, Devidze N, Masliah E, Mucke L. Age-appropriate cognition and subtle dopamine-independent motor deficits in aged Tau knockout mice. Neurobiol Aging. 2013 Jun;34(6):1523-9. doi: 10.1016/j.neurobiolaging.2012.12.003. Epub 2013 Jan 16. PubMed PMID: 23332171; PubMed Central PMCID: PMC3596503.

Fazal F, Bijli KM, Murrill M, Leonard A, Minhajuddin M, Anwar KN, Finkelstein JN, Watterson DM, Rahman A. Critical role of non-muscle myosin light chain kinase in thrombin-induced endothelial cell inflammation and lung PMN infiltration. PLoS One. 2013;8(3):e59965. doi: 10.1371/journal.pone.0059965. Epub 2013 Mar 21. PubMed PMID: 23555849; PubMed Central PMCID: PMC3605402.

Zhang F, Bhat S, Gabelli SB, Chen X, Miller MS, Nacev BA, Cheng YL, Meyers DJ, Tenney K, Shim JS, Crews P, Amzel LM, Ma D, Liu JO. Pyridinylquinazolines Selectively Inhibit Human Methionine Aminopeptidase-1 in Cells. J Med Chem. 2013  May 1. [Epub ahead of print] PubMed PMID: 23634668

Shinohara RT, Narayan AK, Hong K, Kim HS, Coresh J, Streiff MB, Frangakis CE. Estimating parsimonious models of longitudinal causal effects using regressions on propensity scores. Stat Med. 2013 Mar 27. doi: 10.1002/sim.5801. [Epub ahead of print] PubMed PMID: 23533091.

Neumann, N. Why Medicine? Medical Students’ Motivations for Pursuing Careers in Medicine.  Authored a chapter within the book, 2013.

Laird GM, Eisele EE, Rabi SA, Nikolaeva D, Siliciano RF. A novel cell-based high-throughput screen for inhibitors of HIV-1 gene expression and budding identifies the cardiac glycosides. J Antimicrob Chemother. 2014 Apr;69(4):988-94. doi: 10.1093/jac/dkt471. Epub 2013 Nov 24. PubMed PMID: 24275119; PubMed Central PMCID: PMC3956374.

Miura K, Takashima E, Deng B, Tullo G, Diouf A, Moretz SE, Nikolaeva D, Diakite M, Fairhurst RM, Fay MP, Long CA, Tsuboi T. Functional comparison of Plasmodium falciparum transmission-blocking vaccine  candidates by the standard membrane-feeding assay. Infect Immun. 2013 Dec;81(12):4377-82. doi: 10.1128/IAI.01056-13. Epub 2013 Sep 16. PubMed PMID: 24042109; PubMed Central PMCID: PMC3838000.

Alder JK, Parry EM, Yegnasubramanian S, Wagner CL, Lieblich LM, Auerbach R, Auerbach AD, Wheelan SJ, Armanios M. Telomere phenotypes in females with heterozygous mutations in the dyskeratosis congenita 1 (DKC1) gene. Hum Mutat. 2013 Nov;34(11):1481-5. doi: 10.1002/humu.22397. Epub 2013 Sep 11. PubMed PMID: 23946118; PubMed Central PMCID: PMC3926107.

Pendleton JC, Shamblott MJ, Gary DS, Belegu V, Hurtado A, Malone ML, McDonald JW. Chondroitin Sulfate Proteoglycans Inhibit Oligodendrocyte Myelination through PTPσ. Exp Neurol. 2013 Apr 12. doi:pii: S0014-4886(13)00123-4. 10.1016/j.expneurol.2013.04.003. [Epub ahead of print] PubMed PMID: 23588220.

Perica K, De León Medero A, Durai M, Chiu YL, Bieler JG, Sibener L, Niemöller M, Assenmacher M, Richter A, Edidin M, Oelke M, Schneck J. Nanoscale artificial antigen presenting Cells for T cell immunotherapy. Nanomedicine. 2013 Jul 24. doi:pii: S1549-9634(13)00341-9. 10.1016/j.nano.2013.06.015. [Epub ahead of print] PubMed PMID: 23891987.

Sunshine JC, Perica K, Schneck JP, Green JJ. Particle shape dependence of CD8+ T cell activation by artificial antigen presenting cells. Biomaterials. 2014 Jan;35(1):269-77. doi: 10.1016/j.biomaterials.2013.09.050. Epub 2013 Oct 5. PubMed PMID: 24099710; PubMed Central PMCID: PMC3902087.

Dobrowsky TM, Rabi SA, Nedellec R, Daniels BR, Mullins JI, Mosier DE, Siliciano RF, Wirtz D.  Adhesion and fusion efficiencies of human immunodeficiency virus type 1 (HIV-1) surface proteins.  Sci Rep. 2013 3:3014. PMID24145278; PMC3804852. *Co-first author.

Shan L, Rabi SA, Laird GM, Eisele EE, Zhang H, Margolick JB, Siliciano RF. A Novel PCR Assay for Quantification of HIV-1 RNA. J Virol. 2013 Jun;87(11):6521-5. doi: 10.1128/JVI.00006-13. Epub 2013 Mar 27. PubMed PMID: 23536672; PubMed Central PMCID: PMC3648108.

Laird GM, Eisele EE, Rabi SA, Lai J, Chioma S, Blankson JN, Siliciano JD, Siliciano RF. Rapid Quantification of the Latent Reservoir for HIV-1 Using a Viral Outgrowth Assay. PLoS Pathog. 2013 May;9(5):e1003398. doi: 10.1371/journal.ppat.1003398. Epub 2013 May 30. PubMed PMID: 23737751; PubMed Central PMCID: PMC3667757.

Russell E, Johnson B, Buehner H, et al.. Health systems in context: a systematic review of the integration of the social determinants of health within health systems frameworks. 2013 Rev Panam Salud Publica.  2013 34:461-7.  PMID24569976.

Doocy S, Russell E, Gorokhovich Y, Kirsch T. 2013. Disaster preparedness and humanitarian response in flood and landslide-affected communities in Eastern Uganda. Disaster Prevention and Management, 22: 326-339.

Scangos KW, Aronberg R, Stuphorn V. Performance monitoring by presupplementary and supplementary motor area during an arm movement countermanding task. J Neurophysiol. 2013 Apr;109(7):1928-39. doi: 10.1152/jn.00688.2012. Epub 2013 Jan 16. PubMed PMID: 23324325; PubMed Central PMCID: PMC3628008.

Schneider AL, Lazo M, Selvin E, Clark JM. Racial differences in nonalcoholic fatty liver disease in the U.S. population. Obesity (Silver Spring). 2013 Mar 20. doi: 10.1002/oby.20426. [Epub ahead of print] PubMed PMID: 23512725; PubMed Central PMCID: PMC3690150.

Schneider AL, Lazo M, Ndumele CE, Pankow JS, Coresh J, Clark JM, Selvin E. Liver enzymes, race, gender and diabetes risk: the Atherosclerosis Risk in Communities (ARIC) Study. Diabet Med. 2013 Aug;30(8):926-33. doi: 10.1111/dme.12187. Epub 2013 Apr 12. PubMed PMID: 23510198; PubMed Central PMCID: PMC3715563.

Schneider AL, Williams EK, Brancati FL, Blecker S, Coresh J, Selvin E. Diabetes and risk of fracture-related hospitalization: the Atherosclerosis Risk in Communities Study. Diabetes Care. 2013 May;36(5):1153-8. doi: 10.2337/dc12-1168. Epub 2012 Dec 17. PubMed PMID: 23248194; PubMed Central PMCID: PMC3631877.

Heaphy CM, Schreck KC, Raabe E, Mao XG, An P, Chu Q, Poh W, Jiao Y, Rodriguez FJ, Odia Y, Meeker AK, Eberhart CG. A glioblastoma neurosphere line with alternative lengthening of telomeres. Acta Neuropathol. 2013 Oct;126(4):607-8. PubMed PMID: 24022427; PubMed Central PMCID: PMC3874856.

Yang, X, Sexauer, A, and Levis, M. Bone marrow stroma-mediated resistance to FLT3 inhibitors in FLT3/ITD AML is mediated by persistent activation of ERK. Br J Haematol. 2013 doi: 10.1111/bjh.12599. PMID24116827.

Tilson MP, Jones RJ, Sexauer A, Griffin CA, Morsberger LA, Batista DA, Small D, Burns KH, Gocke CD, Vuica-Ross M, Borowitz MJ, Duffield AS. Targeted pathologic evaluation of bone marrow donors identifies previously undiagnosed marrow abnormalities. Biol Blood Marrow Transplant. 2013 Aug;19(8):1254-9. doi: 10.1016/j.bbmt.2013.05.022. Epub 2013 Jun 13. PubMed PMID: 23769818; PubMed Central PMCID: PMC3762256.

Prue CS, Shannon KL, Khyang J, Edwards LJ, Ahmed S, Ram M, Shields T, Hossain  MS, Glass GE, Nyunt MM, Sack DA, Sullivan DJ Jr, Khan WA. Mobile phones improve case detection and management of malaria in rural Bangladesh. Malar J. 2013 Feb 4;12:48. doi: 10.1186/1475-2875-12-48. PubMed PMID: 23374585; PubMed Central PMCID: PMC3585886.

Kranzer K, Afnan-Holmes H, Tomlin K, Golub JE, Shapiro AE, Schaap A, Corbett EL, Lönnroth K, Glynn JR. The benefits to communities and individuals of screening for active tuberculosis disease: a systematic review. Int J Tuberc Lung Dis. 2013 Apr;17(4):432-46. doi: 10.5588/ijtld.12.0743. Review. PubMed PMID: 23485377.

Shenderov K, Barber DL, Mayer-Barber KD, Gurcha SS, Jankovic D, Feng CG, Oland S, Hieny S, Caspar P, Yamasaki S, Lin X, Ting JP, Trinchieri G, Besra GS, Cerundolo V, Sher A. Cord Factor and Peptidoglycan Recapitulate the Th17-Promoting Adjuvant Activity of Mycobacteria through Mincle/CARD9 Signaling and the Inflammasome. J Immunol. 2013 Jun 1;190(11):5722-30. doi: 10.4049/jimmunol.1203343. Epub 2013 Apr 29. PubMed PMID: 23630357.

Stevens D, Wilcox HC, Mackinnon DF, Mondimore FM, Schweizer B, Jancic D, Coryell WH, Weissman MM, Levinson DF, Potash JB. Posttraumatic Stress Disorder Increases Risk For Suicide Attempt In Adults With Recurrent Major Depression. Depress Anxiety. 2013 Jul 24. doi: 10.1002/da.22160. [Epub ahead of print] PubMed PMID: 23893768.

Bishop CJ, Ketola TM, Tzeng SY, Sunshine JC, Urtti A, Lemmetyinen H, Vuorimaa-Laukkanen E, Yliperttula M, Green JJ. The effect and role of carbon atoms in poly(β-amino ester)s for DNA binding and gene delivery. J Am Chem Soc. 2013 May 8;135(18):6951-7. doi: 10.1021/ja4002376. Epub 2013 Apr 29. PubMed PMID: 23570657.

Sunshine JC, Green JJ. Nanoengineering approaches to the design of artificial  antigen-presenting cells. Nanomedicine (Lond). 2013 Jul;8(7):1173-89. doi: 10.2217/nnm.13.98. PubMed PMID: 2383785.

Mitchell LA, Cai Y, Taylor M, Noronha AM, Chuang J, Dai L, Boeke JD. Multichange isothermal mutagenesis: a new strategy for multiple site-directed mutations in plasmid DNA. ACS Synth Biol. 2013 Aug 16;2(8):473-7. doi: 10.1021/sb300131w. Epub 2013 Mar 11. PubMed PMID: 23654272.

Taylor MS, Ruch TR, Hsiao PY, Hwang Y, Zhang P, Dai L, Huang CR, Berndsen CE, Kim MS, Pandey A, Wolberger C, Marmorstein R, Machamer C, Boeke JD, Cole PA. Architectural organization of the metabolic regulatory enzyme ghrelin O-acyltransferase. J Biol Chem. 2013 Nov 8;288(45):32211-28. doi: 10.1074/jbc.M113.510313. Epub 2013 Sep 17. PubMed PMID: 24045953; PubMed Central PMCID: PMC3820860.

Smadbeck J, Peterson MB, Khoury GA, Taylor MS, Floudas CA. Protein WISDOM: A Workbench for In silico De novo Design of BioMolecules. J Vis Exp. 2013 Jul 25;(77). doi: 10.3791/50476. PubMed PMID: 23912941.

Xu R, Paul BD, Smith DR, Tyagi R, Rao F, Khan AB, Blech DJ, Vandiver MS, Harraz MM, Guha P, Ahmed I, Sen N, Gallagher M, Snyder SH. Inositol polyphosphate multikinase is a transcriptional coactivator required for immediate early gene induction. Proc Natl Acad Sci USA. 2013  110:16181-6. PMID24043835; PMC3791727.

Vandiver MS, Paul BD, Xu R, Karuppagounder S, Rao F, Snowman AM, Ko HS, Il Lee Y, Dawson VL, Dawson TM, Sen N, Snyder SH. Sulfhydration mediates neuroprotective actions of parkin. Nat Commun. 2013 Mar 27;4:1626. doi: 10.1038/ncomms2623. PubMed PMID: 23535647; PubMed Central PMCID: PMC3622945.

Xu R, Sen N, Paul BD, Snowman AM, Rao F, Vandiver MS, Xu J, Snyder SH. Inositol Polyphosphate Multikinase Is a Coactivator of p53-Mediated Transcription and Cell Death. Sci Signal. 2013 Apr 2;6(269):ra22. doi: 10.1126/scisignal.2003405. PubMed PMID: 23550211.

Vaswani PA, Shadmehr R. Decay of motor memories in the absence of error. J Neurosci. 2013 May 1;33(18):7700-9. doi: 10.1523/JNEUROSCI.0124-13.2013. PubMed PMID: 23637163.

Wang GM, Wong HY, Konishi H, Blair BG, Abukhdeir AM, Gustin JP, Rosen DM, Denmeade SR, Rasheed Z, Matsui W, Garay JP, Mohseni M, Higgins MJ, Cidado J, Jelovac D, Croessmann S, Cochran RL, Karnan S, Konishi Y, Ota A, Hosokawa Y, Argani P, Lauring J, Park BH. Single Copies of Mutant KRAS and Mutant PIK3CA Cooperate in Immortalized Human Epithelial Cells to Induce Tumor Formation. Cancer Res. 2013 May 21. [Epub ahead of print] PubMed PMID: 23580570.

Bettegowda C, Agrawal N, Jiao Y, Wang Y, Wood LD, Rodriguez FJ, Hruban RH, Gallia GL, Binder ZA, Riggins CJ, Salmasi V, Riggins GJ, Reitman ZJ, Rasheed A, Keir S, Shinjo S, Marie S, McLendon R, Jallo G, Vogelstein B, Bigner D, Yan H, Kinzler KW, Papadopoulos N. Exomic sequencing of four rare central nervous system tumor types. Oncotarget. 2013 Apr;4(4):572-83. PubMed PMID: 23592488; PubMed Central PMCID: PMC3720605.

Kinde I, Bettegowda C, Wang Y, Wu J, Agrawal N, Shih IeM, Kurman R, Dao F, Levine DA, Giuntoli R, Roden R, Eshleman JR, Carvalho JP, Marie SK, Papadopoulos N, Kinzler KW, Vogelstein B, Diaz LA Jr. Evaluation of DNA from the Papanicolaou test to detect ovarian and endometrial cancers. Sci Transl Med. 2013 Jan 9;5(167):167ra4. doi: 10.1126/scitranslmed.3004952. PubMed PMID: 23303603.

Papadopoulos N, Kinde I, Munari E, Faraj SF, Hruban RH,Schoenberg MP, Bivalacqua T, Allaf ME, Springer S, Wang Y, Diaz LA Jr, Kinzler KW, Vogelstein B, Netto GJ. TERT promoter mutations occur early in urothelial neoplasia and are biomarkers of early disease and disease recurrence in urine. Cancer Res. 2013 Oct11;PubMed PMID: 24121487.

P12097: Treatment of Drug Abuse by Preventing GAPDH Nitrosylation. Risheng Xu (33.3%), Nilkantha Sen (33.3%), Solomon H. Snyder (33.3%). Johns Hopkins University School of Medicine. PATENT.

Bydon M, Xu R, Macki M, De la Garza-Ramos R, Sciubba DM, Wolinsky JP, Witham TF, Gokaslan ZL, Bydon A. Adjacent segment disease after anterior cervical discectomy and fusion in a large series. Neurosurgery. 2013 Oct 21 Epub ahead of print.  PMID: 24149977.

Xu R, Bydon M, Macki M, De la Garza-Ramos R, Sciubba DM, Wolinsky JP, Witham TF, Gokaslan ZL, Bydon A. Adjacent segment disease after ACDF: clinical outcomes after first repeat surgery versus second repeat surgery. Spine. 2013 Oct 21 Epub ahead of print. PMID24150434

Roppenser B, Kwon H, Canadien V, Xu R, Devreotes PN, Grinstein S, Brumell JH.  Multiple host kinases contribute to Akt activation during Salmonella infection. PLoS One. 2013 Aug 22;8(8):e71015. doi: 10.1371/journal.pone.0071015. eCollection 2013. PubMed PMID: 23990921; PubMed Central PMCID: PMC3750030.

Xu R, Paul BD, Smith DR, Tyagi R, Rao F, Khan AB, Blech DJ, Vandiver MS, Harraz MM, Guha P, Ahmed I, Sen N, Gallagher M, Snyder SH. Inositol polyphosphate multikinase is a transcriptional coactivator required for immediate early gene induction. Proc Natl Acad Sci USA. 2013 110:16181-6. PMID24043835; PMC3791727.

Xu R, Sen N, Paul BD, Snowman AM, Rao F, Vandiver MS, Xu J, Snyder SH. Inositol polyphosphate multikinase is a coactivator of p53-mediated transcription and cell death. Sci Signal. 2013 Apr 2;6(269):ra22. doi: 10.1126/scisignal.2003405. PubMed PMID: 23550211.

Vandiver MS, Paul BD, Xu R, Karuppagounder S, Rao F, Snowman AM, Ko HS, Lee YI, Dawson VL, Dawson TM, Sen N, Snyder SH. Sulfhydration mediates neuroprotective actions of parkin. Nat Commun. 2013;4:1626. doi: 10.1038/ncomms2623. PubMed PMID: 23535647; PubMed Central PMCID: PMC3622945.

Bydon M, Xu R, Papademetriou K, Sciubba DM, Wolinsky JP, Witham TF, Gokaslan ZL, Jallo G, Bydon A. Safety of spinal decompression using an ultrasonic bone curette compared with a high-speed drill: outcomes in 337 patients. J Neurosurg Spine. 2013 Jun;18(6):627-33. doi: 10.3171/2013.2.SPINE12879. Epub 2013 Apr 5. PubMed PMID: 23560712.

Xu R, Serritella AV, Sen T, Farook JM, Sedlak TW, Baraban J, Snyder SH, Sen N. Behavioral Effects of Cocaine Mediated by Nitric Oxide-GAPDH Transcriptional Signaling. Neuron. 2013 May 22;78(4):623-30. doi: 10.1016/j.neuron.2013.03.021. PubMed PMID: 23719162.

Xu R, Snyder SH. Gene transcription by p53 requires inositol polyphosphate multikinase as a co-activator. Cell Cycle. 2013 12:1819-20. PMID23708509; PMC3735690.

Howson JM, Roy MS, Zeitels L, Stevens H, Todd JA. HLA class II gene associations in African American type 1 diabetes reveal a protective HLA-DRB1*03 haplotype. Diabet Med. 2013 Jun;30(6):710-6. doi: 10.1111/dme.12148. Epub 2013 Mar 21. PubMed PMID: 23398374; PubMed Central PMCID: PMC3709123.

Zeitels LR, Mendell JT. When 19 is greater than 92. Elife. 2013 Oct 15;2:e01514. doi: 10.7554/eLife.01514. PubMed PMID: 24137549; PubMed Central PMCID: PMC3796316.

2012 (MD-PhD student bolded/italics)

Ahmed I, Liang Y, Schools S, Dawson VL, Dawson TM, Savitt JM. Development and characterization of a new Parkinson’s disease model resulting from impaired autophagy. J Neurosci. 2012 Nov 14;32(46):16503-9. doi: 10.1523/JNEUROSCI.0209-12.2012. PubMed PMID: 23152632; PubMed Central PMCID:PMC3508432.

Kedziorek DA, Hofmann LV, Fu Y, Gilson WD, Cosby KM, Kohl B, Barnett BP, Simons BW, Walczak P, Bulte JW, Gabrielson K, Kraitchman DL. X-ray-visible microcapsules containing mesenchymal stem cells improve hind limb perfusion in a rabbit model of peripheral arterial disease. Stem Cells. 2012 Jun;30(6):1286-96. doi: 10.1002/stem.1096. PubMed PMID: 22438076; PubMed Central PMCID: PMC3653421.

Bharti K, Gasper M, Ou J, Brucato M, Clore-Gronenborn K, Pickel J, Arnheiter H. A regulatory loop involving PAX6, MITF, and WNT signaling controls retinal pigment epithelium development. PLoS Genet. 2012 Jul;8(7):e1002757. doi: 10.1371/journal.pgen.1002757. Epub 2012 Jul 5. PubMed PMID: 22792072; PubMed Central PMCID: PMC3390378.

Burke KP, Munshaw S, Osburn WO, Levine J, Liu L, Sidney J, Sette A, Ray SC, Cox AL. Immunogenicity and cross-reactivity of a representative ancestral sequence in hepatitis C virus infection. J Immunol. 2012 May 15;188(10):5177-88. Epub 2012 Apr 16. PubMed PMID: 22508927; PubMed Central PMCID: PMC3345099.

Munshaw S, Bailey JR, Liu L, Osburn WO, Burke KP, Cox AL, Ray SC. Computational reconstruction of Bole1a, a representative synthetic hepatitis C virus subtype 1a genome. J Virol. 2012 May;86(10):5915-21. Epub 2012 Mar 21. PubMed PMID: 22438535; PubMed Central PMCID: PMC3347276.

Roby YA, Bushey MA, Cheng LE, Kulaga HM, Lee SJ, Reed RR. Zfp423/OAZ Mutation Reveals the Importance of Olf/EBF Transcription Activity in Olfactory Neuronal Maturation. J Neurosci. 2012 Oct 3;32(40):13679-88. doi: 10.1523/JNEUROSCI.6190-11.2012. PubMed PMID: 23035080.

Goldstein E, Viboud C, Charu V, Lipsitch M. Improving the estimation of influenza-related mortality over a seasonal baseline. Epidemiology. 2012 Nov;23(6):829-38. doi:  10.1097/EDE.0b013e31826c2dda. PubMed PMID: 22992574.

Brennan MD, Cheong R, Levchenko A. Systems biology. How information theory, handles cell signaling and  uncertainty. Science. 2012 Oct 19;338(6105):334-5. doi: 10.1126/science.1227946. PubMed PMID: 23087235.

Rhee A, Cheong R, Levchenko A. The application of information theory to biochemical signaling systems. Phys Biol. 2012 Aug;9(4):045011. Epub 2012 Aug 7. PubMed PMID: 22872091.

Hsu SH, Wang B, Kota J, Yu J, Costinean S, Kutay H, Yu L, Bai S, La Perle K, Chivukula RR, Mao H, Wei M, Clark KR, Mendell JR, Caligiuri MA, Jacob ST, Mendell JT, Ghoshal K. Essential metabolic, anti-inflammatory, and anti-tumorigenic functions of miR-122 in liver. J Clin Invest. 2012 Aug 1;122(8):2871-83. doi: 10.1172/JCI63539. Epub 2012 Jul 23. PubMed PMID: 22820288; PubMed Central PMCID: PMC3408748.

Bhat S, Shim JS, Zhang F, Chong CR, Liu JO. Substituted oxines inhibit endothelial cell proliferation and angiogenesis. Org Biomol Chem. 2012 Apr 21;10(15):2979-92. doi: 10.1039/c2ob06978d. Epub 2012 Mar 6. PubMed PMID: 22391578.

Wojtasz L, Cloutier JM, Baumann M, Daniel K, Varga J, Fu J, Anastassiadis K, Stewart AF, Reményi A, Turner JM, Tóth A. Meiotic DNA double-strand breaks and chromosome asynapsis in mice are monitored by distinct HORMAD2-independent and -dependent mechanisms. Genes Dev. 2012 May 1;26(9):958-73. doi: 10.1101/gad.187559.112. PubMed PMID: 22549958; PubMed Central PMCID: PMC3347793.

Cottrell TR, Hall JC, Rosen A, Casciola-Rosen L. Identification of novel autoantigens by a triangulation approach. J Immunol Methods. 2012 Nov 30;385(1-2):35-44. doi: 10.1016/j. jim.2012.07.024. Epub 2012 Aug 11. PubMed PMID: 22910000; PubMed Central PMCID: PMC3457001.

Drummond R, Cauvi DM, Hawisher D, Song D, Niño DF, Coimbra R, Bickler S, De Maio A. Deletion of scavenger receptor A gene in mice resulted in protection from septic shock and modulation of TLR4 signaling in isolated peritoneal macrophages. Innate Immun. 2013 Feb;19(1):30-41. doi: 10.1177/1753425912449548. Epub 2012 Jul  2. PubMed PMID: 22751446.

Morikawa T, Kajimura M, Nakamura T, Hishiki T, Nakanishi T, Yukutake Y, Nagahata Y, Ishikawa M, Hattori K, Takenouchi T, Takahashi T, Ishii I, Matsubara K, Kabe Y, Uchiyama S, Nagata E, Gadalla MM, Snyder SH, Suematsu M. Hypoxic regulation of the cerebral microcirculation is mediated by a carbon monoxide-sensitive hydrogen sulfide pathway. Proc Natl Acad Sci U S A. 2012 Jan 24;109(4):1293-8. Epub 2012 Jan 9. PubMed PMID: 22232681; PubMed Central PMCID: PMC3268316.

Sen N, Paul BD, Gadalla MM, Mustafa AK, Sen T, Xu R, Kim S, Snyder SH. Hydrogen sulfide-linked sulfhydration of NF-κB mediates its antiapoptotic actions. Mol Cell. 2012 Jan 13;45(1):13-24. PubMed PMID: 22244329; PubMed Central PMCID: PMC3261430

Makarenko VV, Nanduri J, Raghuraman G, Fox AP, Gadalla MM, Kumar GK, Snyder SH, Prabhakar NR. Endogenous H2S is required for Hypoxic Sensing by Carotid Body  Glomus Cells. Am J Physiol Cell Physiol. 2012 Jun 27. [Epub ahead of print] PubMed PMID: 22744006.

Doyle JJ, Gerber EE, Dietz HC. Matrix-dependent perturbation of TGFβ signaling and disease. FEBS Lett. 2012 Jul 4;586(14):2003-15. Epub 2012 May 26. Review. PubMed PMID: 22641039; PubMed Central PMCID: PMC3426037.

Unterman SA, Gibson M, Lee JH, Crist J, Chansakul T, Yang EC, Elisseeff JH. Hyaluronic Acid-Binding Scaffold for Articular Cartilage Repair. Tissue Eng Part  A. 2012 Aug 14. [Epub ahead of print] PubMed PMID: 22724901.

Coburn JM, Gibson M, Monagle S, Patterson Z, Elisseeff JH. Bioinspired nanofibers support chondrogenesis for articular cartilage repair. Proc Natl Acad Sci U S A. 2012 Jun 19;109(25):10012-7. Epub 2012 Jun 4. PubMed PMID: 22665791; PubMed Central PMCID: PMC3382486.

Deans TL, Singh A, Gibson M, Elisseeff JH. Regulating synthetic gene networks in 3D materials. Proc Natl Acad Sci U S A. 2012 Sep 18;109(38):15217-22. Epub 2012 Aug 27. PubMed PMID: 22927376; PubMed Central PMCID: PMC3458344.

Salter E, Goh B, Hung B, Hutton D, Ghone N, Grayson WL. Bone tissue engineering bioreactors: a role in the clinic? Tissue Eng Part B Rev. 2012 Feb;18(1):62-75. Epub 2012 Jan 4. Review. PubMed PMID: 21902622.

Wang SD, Rath P, Lal B, Richard JP, Li Y, Goodwin CR, Laterra J, Xia S. EphB2  receptor controls proliferation/migration dichotomy of glioblastoma by interacting with focal adhesion kinase. Oncogene. 2012 Dec 13;31(50):5132-43. doi: 10.1038/onc.2012.16. Epub 2012 Feb 6. PubMed PMID: 22310282; PubMed Central  PMCID: PMC3349801.

Recinos PF, Goodwin CR, Quiñones-Hinojosa A, Brem H. Craniotomy for Sellar Tumors:  Schmidek and SweetOperative Neurosurgical Techniques, 6th edition;  by Quiñones-Hinojosa A (ed) (July 6, 2012), ISBN-10: 1416068392 | ISBN-13: 978-1416068396.

Mullen KM, Gocke AR, Allie R, Ntranos A, Grishkan IV, Pardo C, Calabresi PA. Expression of CCR7 and CD45RA in CD4+ and CD8+ subsets in cerebrospinal fluid of  134 patients with inflammatory and non-inflammatory neurological diseases. J Neuroimmunol. 2012 Aug 15;249(1-2):86-92. Epub 2012 May 24. PubMed PMID: 22633193; PubMed Central PMCID: PMC3391349.

Gocke AR, Lebson LA, Grishkan IV, Hu L, Nguyen HM, Whartenby KA, Chandy KG, Calabresi PA. Kv1.3 deletion biases T cells toward an immunoregulatory phenotype and renders mice resistant to autoimmune encephalomyelitis. J Immunol. 2012 Jun 15;188(12):5877-86. Epub 2012 May 11. PubMed PMID: 22581856; PubMed Central PMCID: PMC3370138.

Rahn KA, Watkins CC, Alt J, Rais R, Stathis M, Grishkan I, Crainiceau CM, Pomper MG, Rojas C, Pletnikov MV, Calabresi PA, Brandt J, Barker PB, Slusher BS,  Kaplin AI. Inhibition of glutamate carboxypeptidase II (GCPII) activity as a treatment for cognitive impairment in multiple sclerosis. Proc Natl Acad Sci U S A. 2012 Dec 4;109(49):20101-6. doi: 10.1073/pnas.1209934109. Epub 2012 Nov 19. PubMed PMID: 23169655; PubMed Central PMCID: PMC3523869.

Grishkan IV, Beaty C, Weiss M, Wolfgang C, Khashab MA, Giday SA, Eckhauser FE. Double Hamoudi: A case report. Int J Surg Case Rep. 2012;3(2):70-3. Epub 2011 Nov 10. PubMed PMID: 22288050; PubMed Central PMCID: PMC3267279.

Heikamp EB, Powell JD. Sensing the immune microenvironment to coordinate T cell metabolism, differentiation & function. Semin Immunol. 2012 Dec;24(6):414-20. doi: 10.1016/j.smim.2012.12.003. Epub 2013 Jan 14. PubMed PMID: 23332779; PubMed Central PMCID: PMC3582714.

Herzer KR, Mirrer M, Xie Y, Steppan J, Li M, Jung C, Cover R, Doyle PA, Mark LJ. Patient safety reporting systems: sustained quality improvement using a multidisciplinary team and “good catch” awards. Jt Comm J Qual Patient Saf. 2012 Aug;38(8):339-47. PubMed PMID: 22946251.

Kshitiz, Hubbi ME, Ahn EH, Downey J, Afzal J, Kim DH, Rey S, Chang C, Kundu A, Semenza GL, Abraham RM, Levchenko A. Matrix rigidity controls endothelial differentiation and morphogenesis of cardiac precursors. Sci Signal. 2012 Jun 5;5(227):ra41. doi: 10.1126/scisignal.2003002. Erratum in: Sci Signal. 2012 Oct 9;5(245):er6. Corrected and republished in: Sci Signal. 2012 Oct 9;5(245):ra41. PubMed PMID: 22669846.

Hubbi ME, Gilkes DM, Baek JH, Semenza GL. Four-and-a-half LIM domain proteins  inhibit transactivation by hypoxia-inducible factor 1. J Biol Chem. 2012 Feb 24;287(9):6139-49. doi: 10.1074/jbc.M111.278630. Epub 2012 Jan 4. PubMed PMID: 22219185; PubMed Central PMCID: PMC3307273.

Wong CC, Zhang H, Gilkes DM, Chen J, Wei H, Chaturvedi P, Hubbi ME, Semenza GL. Inhibitors of hypoxia-inducible factor 1 block breast cancer metastatic niche formation and lung metastasis. J Mol Med (Berl). 2012 Jul;90(7):803-15. doi: 10.1007/s00109-011-0855-y. Epub 2012 Jan 10. PubMed PMID: 22231744; PubMed Central PMCID: PMC3437551.

Issa JB, Zhang K. Universal conditions for exact path integration in neural systems. Proc Natl Acad Sci U S A. 2012 Apr 24;109(17):6716-20. Epub 2012 Apr 9. PubMed PMID: 22493275; PubMed Central PMCID: PMC3340063.

Johnson TV, Martin KR. Cell transplantation approaches to retinal ganglion cell neuroprotection in glaucoma. Curr Opin Pharmacol. 2013 Feb;13(1):78-82. doi: 10.1016/j.coph.2012.08.003. Epub 2012 Aug 29. Review. PubMed PMID: 22939899.

Keenan BP, Jaffee EM. Whole cell vaccines–past progress and future strategies. Semin Oncol. 2012 Jun;39(3):276-86. Review. PubMed PMID: 22595050; PubMed Central PMCID: PMC3356993.

Diaz LA Jr, Williams RT, Wu J, Kinde I, Hecht JR, Berlin J, Allen B, Bozic I, Reiter JG, Nowak MA, Kinzler KW, Oliner KS, Vogelstein B. The molecular evolution of acquired resistance to targeted EGFR blockade in colorectal cancers. Nature. 2012 Jun 28;486(7404):537-40. PubMed PMID: 22722843; PubMed Central PMCID: PMC3436069.

Leary RJ, Sausen M, Kinde I, Papadopoulos N, Carpten JD, Craig D, O’Shaughnessy J, Kinzler KW, Parmigiani G, Vogelstein B, Diaz LA Jr, Velculescu VE. Detection of chromosomal alterations in the circulation of cancer patients with whole-genome sequencing. Sci Transl Med. 2012 Nov 28;4(162):162ra154. doi: 10.1126/scitranslmed.3004742. PubMed PMID: 23197571.

Kinde I, Papadopoulos N, Kinzler KW, Vogelstein B. FAST-SeqS: a simple and efficient method for the detection of aneuploidy by massively parallel sequencing. PLoS One. 2012;7(7):e41162. Epub 2012 Jul 18. PubMed PMID: 22815955;  PubMed Central PMCID: PMC3399813.

Weiss VL, Lee TH, Song H, Kouo TS, Black CM, Sgouros G, Jaffee EM, Armstrong TD. Trafficking of high avidity HER-2/neu-specific T cells into HER-2/neu-expressing tumors after depletion of effector/memory-like regulatory T cells. PLoS One. 2012;7(2):e31962. Epub 2012 Feb 16. PubMed PMID: 22359647; PubMed Central PMCID: PMC3281086.

Deshpande NA, James NT, Kucirka LM, Boyarsky BJ, Garonzik-Wang JM, Cameron AM, Singer AL, Dagher NN, Segev DL. Pregnancy outcomes of liver transplant recipients: a systematic review and meta-analysis. Liver Transpl. 2012 Jun;18(6):621-9. doi: 10.1002/lt.23416. Review. PubMed PMID: 22344967.

Grams ME, Kucirka LM, Hanrahan CF, Montgomery RA, Massie AB, Segev DL. Candidacy for kidney transplantation of older adults. J Am Geriatr Soc. 2012 Jan;60(1):1-7. doi: 10.1111/j.1532-5415.2011.03652.x. PubMed PMID: 22239290.

Garonzik-Wang JM, Govindan P, Grinnan JW, Liu M, Ali HM, Chakraborty A, Jain V, Ros RL, James NT, Kucirka LM, Hall EC, Berger JC, Montgomery RA, Desai NM, Dagher NN, Sonnenday CJ, Englesbe MJ, Makary MA, Walston JD, Segev DL. Frailty and delayed graft function in kidney transplant recipients. Arch Surg. 2012 Feb;147(2):190-3. doi: 10.1001/archsurg.2011.1229. PubMed PMID: 22351919.

Ros RL, Kucirka LM, Govindan P, Sarathy H, Montgomery RA, Segev DL. Patient attitudes toward CDC high infectious risk donor kidney transplantation: inferences from focus groups. Clin Transplant. 2012 Mar-Apr;26(2):247-53. doi: 10.1111/j.1399-0012.2011.01469.x. Epub 2011 May 9. PubMed PMID: 21554396.

Garonzik-Wang JM, Berger JC, Ros RL, Kucirka LM, Deshpande NA, Boyarsky BJ, Montgomery RA, Hall EC, James NT, Segev DL. Live donor champion: finding live kidney donors by separating the advocate from the patient.  Transplantation. 2012  Jun 15;93(11):1147-50. doi: 10.1097/TP.0b013e31824e75a5. PubMed PMID: 22461037; PubMed Central PMCID: PMC3374007.

Grams ME, Coresh J, Segev DL, Kucirka LM, Tighiouart H, Sarnak MJ. Vascular disease, ESRD, and death: interpreting competing risk analyses. Clin J Am Soc Nephrol. 2012 Oct;7(10):1606-14. doi: 10.2215/CJN.03460412. Epub 2012 Aug 2. PubMed PMID: 22859747; PubMed Central PMCID: PMC3463208.

Kucirka LM, Peters TG, Segev DL. Impact of donor hepatitis C virus infection status on death and need for liver transplant in hepatitis C virus-positive kidney transplant recipients. Am J Kidney Dis. 2012 Jul;60(1):112-20. doi: 10.1053/j.ajkd.2012.03.015. Epub 2012 May 4. PubMed PMID: 22560841.

Balhara KS, Kucirka LM, Jaar BG, Segev DL. Disparities in provision of transplant education by profit status of the dialysis center. Am J Transplant. 2012 Nov;12(11):3104-10. doi: 10.1111/j.1600-6143.2012.04207.x. Epub 2012 Aug 6. PubMed PMID: 22883444.

Grams ME, McAdams Demarco MA, Kucirka LM, Segev DL. Recipient age and time spent hospitalized in the year before and after kidney transplantation. Transplantation. 2012 Oct 15;94(7):750-6. doi: 10.1097/TP.0b013e31826205b9. PubMed PMID: 22932116; PubMed Central PMCID: PMC3465472.

Kut C,  Redmond K. The Role of Adjuvant Therapy in Subtotal Resection and High Grade Ependymomas;  Best Evidence Medicine for Brain Tumor Surgery;  Thieme Medical Publishers Inc.;   May 2012.

Kut C, Zhang Y, Hedayati M, Zhou H, Cornejo C, Bordelon D, Mihalic J, Wabler, M, Burghardt E, Gruettner C, Geyh A, Brayton C, Deweese TL, Ivkov R. Preliminary study of injury from heating systemically delivered, nontargeted dextran-superparamagnetic iron oxide nanoparticles in mice. Nanomedicine (Lond). 2012 Nov;7(11):1697-711. doi: 10.2217/nnm.12.65. Epub 2012 Jul 26. PubMed PMID: 22830502.

Fleming IN, Kut C, Macura KJ, Su LM, Rivaz H, Schneider CM, Hamper U, Lotan T, Taylor R, Hager G, Boctor E. Ultrasound elastography as a tool for imaging guidance during prostatectomy: initial experience. Med Sci Monit. 2012 Nov;18(11):CR635-42. PubMed PMID: 23111738; PubMed Central PMCID: PMC3560608.

Liu MM, Chan CC, Tuo J. Genetic mechanisms and age-related macular degeneration: common variants, rare variants, copy number variations, epigenetics, and mitochondrial genetics. Hum Genomics. 2012 Aug 31;6:13. doi: 10.1186/1479-7364-6-13. Review. PubMed PMID: 23244519; PubMed Central PMCID: PMC3500238.

Link TW, Arifin DR, Long CM, Walczak P, Muja N, Arepally A, Bulte JW. Use of Magnetocapsules for In Vivo Visualization and Enhanced Survival of Xenogeneic HepG2 Cell Transplants. Cell Med. 2012 Feb 1;4(2):77-84. PubMed PMID: 23293747; PubMed Central PMCID: PMC3534966.

Noh KH, Lee YH, Jeon JH, Kang TH, Mao CP, Wu TC, Kim TW. Cancer vaccination drives Nanog-dependent evolution of tumor cells toward an immune-resistant and stem-like phenotype. Cancer Res. 2012 Apr 1;72(7):1717-27. Epub 2012 Feb 14. PubMed PMID: 22337995; PubMed Central PMCID: PMC3319841.

Kang TH, Mao CP, He L, Tsai YC, Liu K, La V, Wu TC, Hung CF. Tumor-targeted delivery of IL-2 by NKG2D leads to accumulation of antigen-specific CD8+ T cells  in the tumor loci and enhanced anti-tumor effects. PLoS One. 2012;7(4):e35141. Epub 2012 Apr 11. PubMed PMID: 22509395; PubMed Central PMCID: PMC3324421.

Noh KH, Kim BW, Song KH, Cho H, Lee YH, Kim JH, Chung JY, Kim JH, Hewitt SM, Seong SY, Mao CP, Wu TC, Kim TW. Nanog signaling in cancer promotes stem-like phenotype and immune evasion. J Clin Invest. 2012 Nov 1;122(11):4077-93. doi: 10.1172/JCI64057. Epub 2012 Oct 24. PubMed PMID: 23093782.

McMillan R, Matsui W. Molecular pathways: The hedgehog signaling pathway in cancer. Clin Cancer Res. 2012 Sep 15;18(18):4883-8. doi: 10.1158/1078-0432.CCR-11-2509. Epub 2012 Jun 19. PubMed PMID: 22718857; PubMed Central PMCID: PMC3445776.

Mealer RG, Snyder SH.  Rhes is a striatal-enriched protein with pathophysiologic relevance. European Journal of Neurodegenerative Diseases. Vol.1, no. 1, 80-100  (2012).

Mills, E. MedIQ Learning, LLC. Co-author for the USMLERx Question Bank Eric Mills. NextGenVoices. Science 6 July 2012: 32-34. [DOI:10.1126/science.337.6090.32]

Lee H, Jaffe AE, Feinberg JI, Tryggvadottir R, Brown S, Montano C, Aryee MJ, Irizarry RA, Herbstman J, Witter FR, Goldman LR, Feinberg AP, Fallin MD. DNA methylation shows genome-wide association of NFIX, RAPGEF2 and MSRB3 with gestational age at birth. Int J Epidemiol. 2012 Feb;41(1):188-99. PubMed PMID: 22422452; PubMed Central PMCID: PMC3304532.

Lee G, Ramirez CN, Kim H, Zeltner N, Liu B, Radu C, Bhinder B, Kim YJ, Choi IY, Mukherjee-Clavin B, Djaballah H, Studer L. Large-scale screening using familial dysautonomia induced pluripotent stem cells identifies compounds that rescue IKBKAP expression. Nat Biotechnol. 2012 Dec;30(12):1244-8. doi: 10.1038/nbt.2435. Epub 2012 Nov 25. PubMed PMID: 23159879.

Hossain MA, Rahman MM, Murrill M, Das B, Roy B, Dey S, Maity D, Chakraborti D. Water consumption patterns and factors contributing to water consumption in arsenic affected population of rural West Bengal, India. Sci Total Environ. 2012  Aug 1. [Epub ahead of print] PubMed PMID: 22858413.

Chakraborti D, Rahman MM, Murrill M, Das R, Siddayya, Patil SG, Sarkar A, Dadapeer HJ, Yendigeri S, Ahmed R, Das KK. Environmental arsenic contamination and its health effects in a historic gold mining area of the Mangalur greenstone belt of Northeastern Karnataka, India. J Hazard Mater. 2013 Nov 15;262:1048-55. doi: 10.1016/j.jhazmat.2012.10.002. Epub 2012 Oct 11. PubMed PMID: 23228450.

Sen N, Paul BD, Gadalla MM, Mustafa AK, Sen T, Xu R, Kim S, Snyder SH. Hydrogen sulfide-linked sulfhydration of NF-κB mediates its antiapoptotic actions. Mol Cell. 2012 Jan 13;45(1):13-24. doi: 10.1016/j.molcel.2011.10.021. PubMed PMID: 22244329; PubMed Central PMCID: PMC3261430.

Narayan A, Eng J, Carmi L, McGrane S, Ahmed M, Sharrett AR, Streiff M, Coresh J, Powe N, Hong K. Iliac vein compression as risk factor for left- versus right-sided deep venous thrombosis: case-control study. Radiology. 2012 Dec;265(3):949-57. doi: 10.1148/radiol.12111580. PubMed PMID: 23175547; PubMed Central PMCID: PMC3504322.

Perica K, Bieler JG, Edidin M, Schneck J. Modulation of MHC Binding by Lateral Association of TCR and Coreceptor. Biophys J. 2012 Nov 7;103(9):1890-8. doi: 10.1016/j.bpj.2012.09.011. PubMed PMID: 23199917.

Pujadas E, Feinberg AP. Regulated noise in the epigenetic landscape of development and disease. Cell. 2012 Mar 16;148(6):1123-31. PubMed PMID: 22424224.

Durand CM, Ghiaur G, Siliciano JD, Rabi SA, Eisele EE, Salgado M, Shan L, Lai  JF, Zhang H, Margolick J, Jones RJ, Gallant JE, Ambinder RF, Siliciano RF. HIV-1 DNA is detected in bone marrow populations containing CD4+ T cells but is not found in purified CD34+ hematopoietic progenitor cells in most patients on antiretroviral therapy. J Infect Dis. 2012 Mar 15;205(6):1014-8. Epub 2012 Jan 24. PubMed PMID: 22275402; PubMed Central PMCID: PMC3282572

Jilek BL, Zarr M, Sampah ME, Rabi SA, Bullen CK, Lai J, Shen L, Siliciano RF. A quantitative basis for antiretroviral therapy for HIV-1 infection. Nat Med. 2012 Feb 19;18(3):446-51. doi: 10.1038/nm.2649. PubMed PMID: 22344296; PubMed Central PMCID: PMC3296892

Shan L, Deng K, Shroff NS, Durand CM, Rabi SA, Yang HC, Zhang H, Margolick JB, Blankson JN, Siliciano RF. Stimulation of HIV-1-specific cytolytic T lymphocytes facilitates elimination of latent viral reservoir after virus reactivation. Immunity. 2012 Mar 23;36(3):491-501. Epub 2012 Mar 8. PubMed PMID: 22406268.

Rosenbloom DI, Hill AL, Rabi SA, Siliciano RF, Nowak MA. Antiretroviral dynamics determines HIV evolution and predicts therapy outcome. Nat Med. 2012 Sep 2. doi: 10.1038/nm.2892. [Epub ahead of print] PubMed PMID: 22941277.

Leight JL, Liu WF, Chaturvedi RR, Chen S, Yang MT, Raghavan S, Chen CS. Manipulation of 3D Cluster Size and Geometry by Release from 2D Micropatterns. Cell Mol Bioeng. 2012 Sep 1;5(3):299-306. PubMed PMID: 23730348; PubMed Central PMCID: PMC3665517.

Rodriguez M, Choi J, Park S, Sockanathan S. Gde2 regulates cortical neuronal identity by controlling the timing of cortical progenitor differentiation. Development. 2012 Oct;139(20):3870-9. Epub 2012 Sep 5. PubMed PMID: 22951639.

Jilek BL, Zarr M, Sampah ME, Rabi SA, Bullen CK, Lai J, Shen L, Siliciano RF. A quantitative basis for antiretroviral therapy for HIV-1 infection. Nat Med. 2012 Feb 19;18(3):446-51. doi: 10.1038/nm.2649. PubMed PMID: 22344296; PubMed Central PMCID: PMC3296892.

Schneider AL, Gottesman RF, Mosley T, Alonso A, Knopman DS, Coresh J, Sharrett AR, Selvin E. Cognition and incident dementia hospitalization: results from the atherosclerosis risk in communities study. Neuroepidemiology. 2013;40(2):117-24. doi: 10.1159/000342308. Epub 2012 Oct 22. PubMed PMID: 23095770; PubMed Central PMCID: PMC3642775.

Schneider AL, Pankow JS, Heiss G, Selvin E. Validity and reliability of self-reported diabetes in the atherosclerosis risk in communities study. Am J Epidemiol. 2012 Oct 15;176(8):738-43. doi: 10.1093/aje/kws156. Epub 2012 Sep 25.  PubMed PMID: 23013620; PubMed Central PMCID: PMC3571247.

Schneider AL, Sharrett AR, Patel MD, Alonso A, Coresh J, Mosley T, Selnes O, Selvin E, Gottesman RF. Education and cognitive change over 15 years: the atherosclerosis risk in communities study. J Am Geriatr Soc. 2012 Oct;60(10):1847-53. doi: 10.1111/j.1532-5415.2012.04164.x. Epub 2012 Sep 26. PubMed PMID: 23013064; PubMed Central PMCID: PMC3662980.

Aggarwal V, Schneider AL, Selvin E. Low hemoglobin A(1c) in nondiabetic adults: an elevated risk state? Diabetes Care. 2012 Oct;35(10):2055-60. Epub 2012 Aug 1. PubMed PMID: 22855733; PubMed Central PMCID: PMC3447844.

Asnaghi L, Ebrahimi KB, Schreck KC, Bar EE, Coonfield ML, Bell WR, Handa J, Merbs SL, Harbour JW, Eberhart CG. Notch signaling promotes growth and invasion in uveal melanoma. Clin Cancer Res. 2012 Feb 1;18(3):654-65. doi: 10.1158/1078-0432.CCR-11-1406. Epub 2012 Jan 6. PubMed PMID: 22228632.

Bakalar M, Schroeder JL, Pursley R, Pohida TJ, Glancy B, Taylor J, Chess D, Kellman P, Xue H, Balaban RS. Three-dimensional motion tracking for high-resolution optical microscopy, in vivo. J Microsc. 2012 Jun;246(3):237-47. doi: 10.1111/j.1365-2818.2012.03613.x. PubMed PMID: 22582797.

Sexauer A, Perl A, Yang X, Borowitz M, Gocke C, Rajkhowa T, Thiede C, Frattini M, Nybakken GE, Pratz K, Karp J, Smith BD, Levis M. Terminal myeloid differentiation in vivo is induced by FLT3 inhibition in FLT3/ITD AML. Blood. 2012 Nov 15;120(20):4205-14. doi: 10.1182/blood-2012-01-402545. Epub 2012 Sep 25. PubMed PMID: 23012328; PubMed Central PMCID: PMC3501718.

Nguyen-Ngoc KV, Cheung KJ, Brenot A, Shamir ER, Gray RS, Hines WC, Yaswen P, Werb Z, Ewald AJ. ECM microenvironment regulates collective migration and local dissemination in normal and malignant mammary epithelium. Proc Natl Acad Sci U S A. 2012 Sep 25;109(39):E2595-604. Epub 2012 Aug 23. PubMed PMID: 22923691; PubMed Central PMCID: PMC3465416.

Shapiro AE, Variava E, Rakgokong MH, Moodley N, Luke B, Salimi S, Chaisson RE, Golub JE, Martinson NA. Community-based targeted case finding for tuberculosis and HIV in household contacts of patients with tuberculosis in South Africa. Am J Respir Crit Care Med. 2012 May 15;185(10):1110-6. Epub 2012 Mar 15. PubMed PMID:  22427532

Davis LC, Morgan AJ, Chen JL, Snead CM, Bloor-Young D, Shenderov E, Stanton-Humphreys MN, Conway SJ, Churchill GC, Parrington J, Cerundolo V, Galione A. NAADP activates two-pore channels on T cell cytolytic granules to stimulate exocytosis and killing. Curr Biol. 2012 Dec 18;22(24):2331-7. doi: 10.1016/j.cub.2012.10.035. Epub 2012 Nov 21. PubMed PMID: 23177477; PubMed Central PMCID: PMC3525857.

Shi CS, Shenderov K, Huang NN, Kabat J, Abu-Asab M, Fitzgerald KA, Sher A, Kehrl JH. Activation of autophagy by inflammatory signals limits IL-1β production by targeting ubiquitinated inflammasomes for destruction. Nat Immunol. 2012 Jan 29;13(3):255-63. doi: 10.1038/ni.2215. PubMed PMID: 22286270.

Shmueli RB, Sunshine JC, Xu Z, Duh EJ, Green JJ. Gene delivery nanoparticles specific for human microvasculature and macrovasculature. Nanomedicine. 2012 Oct;8(7):1200-7. doi: 10.1016/j.nano.2012.01.006. Epub 2012 Feb 1. PubMed PMID: 22306159; PubMed Central PMCID: PMC3350835.

Sunshine JC, Sunshine SB, Bhutto I, Handa JT, Green JJ. Poly(β-amino ester)-nanoparticle mediated transfection of retinal pigment epithelial cells in vitro and in vivo. PLoS One. 2012;7(5):e37543. Epub 2012 May 21. PubMed PMID: 22629417; PubMed Central PMCID: PMC3357345.

Sunshine JC, Peng DY, Green JJ. Uptake and Transfection with Polymeric Nanoparticles Are Dependent on Polymer End-Group Structure, but Largely Independent of Nanoparticle Physical and Chemical Properties. Mol Pharm. 2012 Sep 27. [Epub ahead of print] PubMed PMID: 22970908.

Taylor MS, Hwang Y, Hsiao PY, Boeke JD, Cole PA. Ghrelin o-acyltransferase assays and inhibition. Methods Enzymol. 2012;514:205-28. doi: 10.1016/B978-0-12-381272-8.00013-1. PubMed PMID: 22975055.

Dai L, Taylor MS, O’Donnell KA, Boeke JD. Poly(A) Binding Protein C1 Is Essential for Efficient L1 Retrotransposition and Affects L1 RNP Formation. Mol Cell Biol. 2012 Nov;32(21):4323-36. doi: 10.1128/MCB.06785-11. Epub 2012 Aug 20. PubMed PMID: 22907758.

Tsao W, Jeong YH, Lin S, Ling J, Price DL, Chiang PM, Wong PC. Rodent models of TDP-43: recent advances. Brain Res. 2012 Jun 26;1462:26-39. doi: 10.1016/j.brainres.2012.04.031. Epub 2012 May 1. Review. PubMed PMID: 22608070.

Vandiver M, Snyder SH. Hydrogen sulfide: a gasotransmitter of clinical relevance. J Mol Med (Berl). 2012 Mar;90(3):255-63. Review. PubMed PMID: 22314625.

Garay JP, Karakas B, Abukhdeir AM, Cosgrove DP, Gustin JP, Higgins MJ, Konishi H, Konishi Y, Lauring J, Mohseni M, Wang GM, Jelovac D, Weeraratna A, Sherman Baust CA, Morin PJ, Toubaji A, Meeker A, De Marzo AM, Lewis G, Subhawong A, Argani P, Park BH. The growth response to androgen receptor signaling in ERα-negative human breast cells is dependent on p21 and mediated by MAPK activation. Breast Cancer Res. 2012 Feb 9;14(1):R27. PubMed PMID: 22321971; PubMed Central PMCID: PMC3496145.

Agrawal N, Jiao Y, Bettegowda C, Hutfless SM, Wang Y, David S, Cheng Y, Twaddell WS, Latt NL, Shin EJ, Wang LD, Wang L, Yang W, Velculescu VE, Vogelstein B, Papadopoulos N, Kinzler KW, Meltzer SJ. Comparative Genomic Analysis of Esophageal Adenocarcinoma and Squamous Cell Carcinoma. Cancer Discov. 2012 Oct;2(10):899-905. Epub 2012 Aug 9. PubMed PMID: 22877736; PubMed Central PMCID: PMC3473124.

Weiss VL, Lee TH, Jaffee EM, Armstrong TD. Targeting the right regulatory T-cell population for tumor immunotherapy. Oncoimmunology. 2012 Oct 1;1(7):1191-1193. PubMed PMID: 23170276; PubMed Central PMCID: PMC3494642.

Weiss VL, Lee TH, Song H, Kouo TS, Black CM, Sgouros G, Jaffee EM, Armstrong TD. Trafficking of high avidity HER-2/neu-specific T cells into HER-2/neu-expressing tumors after depletion of effector/memory-like regulatory T  cells. PLoS One. 2012;7(2):e31962. Epub 2012 Feb 16. PubMed PMID: 22359647; PubMed Central PMCID: PMC3281086.

Kowalski RG, Ziai WC, Rees RN, Werner JK Jr, Kim G, Goodwin H, Geocadin RG. Third-line antiepileptic therapy and outcome in status epilepticus: the impact of vasopressor use and prolonged mechanical ventilation. Crit Care Med. 2012 Sep;40(9):2677-84. doi: 10.1097/CCM.0b013e3182591ff1. PubMed PMID: 22732291.

Wood ET, Ronen I, Techawiboonwong A, Jones CK, Barker PB, Calabresi P, Harrison D, Reich DS. Investigating Axonal Damage in Multiple Sclerosis by  Diffusion Tensor Spectroscopy. J Neurosci. 2012 May 9;32(19):6665-6669. PubMed PMID: 22573688.

Carr-Wilkinson J, Wylie L, Anderson J, Gray J. Meeting report–Neuroblastoma Research Symposium, London, October 14, 2011. Pediatr Blood Cancer. 2012 Sep;59(3):594-6. doi: 10.1002/pbc.24230. Epub 2012 Jun 7. PubMed PMID: 22678821.

Sen N, Paul BD, Gadalla MM, Mustafa AK, Sen T, Xu R, Kim S, Snyder SH. Hydrogen sulfide-linked sulfhydration of NF-κB mediates its antiapoptotic actions. Mol Cell. 2012 Jan 13;45(1):13-24. PubMed PMID: 22244329; PubMed Central PMCID: PMC3261430.

Zabransky DJ, Nirschl CJ, Durham NM, Park BV, Ceccato CM, Bruno TC, Tam AJ, Getnet D, Drake CG. Phenotypic and functional properties of Helios+ regulatory T  cells. PLoS One. 2012;7(3):e34547. Epub 2012 Mar 30. PubMed PMID: 22479644; PubMed Central PMCID: PMC3316700.

2011  (MD-PhD student bolded/italics)

Pendleton C, Ahmed I, Quinones-Hinojosa A. Neurotransplantation: lux et veritas, fiction or reality? J Neurosurg Sci. 2011 Dec;55(4):297-304. Review. PubMed PMID: 22198582.

Barnett BP, Bressler J, Chen T, Hutchins GM, Crain BJ, Kaufmann WE. αB-crystallin negative astrocytic inclusions. Brain Dev. 2011 Apr;33(4):349-52.PubMed PMID: 20621427.

Barnett BP, Arepally A, Stuber M, Arifin DR, Kraitchman DL, Bulte JW. Synthesis of magnetic resonance-, X-ray- and ultrasound-visible alginate microcapsules for immunoisolation and noninvasive imaging of cellular therapeutics. Nat Protoc. 2011 Jul 14;6(8):1142-51. doi: 10.1038/nprot.2011.352. PubMed PMID: 21799484; PubMed Central PMCID: PMC3193154

Barnett BP, Ruiz-Cabello J, Hota P, Ouwerkerk R, Shamblott MJ, Lauzon C, Walczak P, Gilson WD, Chacko VP, Kraitchman DL, Arepally A, Bulte JW. Use of perfluorocarbon nanoparticles for non-invasive multimodal cell tracking of human pancreatic islets. Contrast Media Mol Imaging. 2011 Jul-Aug;6(4):251-9. doi:10.1002/cmmi.424. PubMed PMID: 21861285; PubMed Central PMCID: PMC3160722.

Boto AN, Xu W, Jakoncic J, Pannuri A, Romeo T, Bessman MJ, Gabelli SB, Amzel LM. Structural studies of the Nudix GDP-mannose hydrolase from E. coli reveals a new motif for mannose recognition. Proteins. 2011 Aug;79(8):2455-66. doi:10.1002/prot.23069. Epub 2011 Jun 2. PubMed PMID: 21638333; PubMed Central PMCID:PMC3164844.

Gospe SM 3rd, Baker SA, Kessler C, Brucato MF, Winter JR, Burns ME, Arshavsky VY. Membrane attachment is key to protecting transducin GTPase-activating complex from intracellular proteolysis in photoreceptors. J Neurosci. 2011 Oct 12;31(41):14660-8. doi: 10.1523/JNEUROSCI.3516-11.2011. PubMed PMID: 21994382; PubMed Central PMCID: PMC3207252.

Charu V, Chowell G, Palacio Mejia LS, Echevarría-Zuno S, Borja-Aburto VH, Simonsen L, Miller MA, Viboud C. Mortality burden of the A/H1N1 pandemic in Mexico: a comparison of deaths and years of life lost to seasonal influenza. Clin Infect Dis. 2011 Nov;53(10):985-93. doi: 10.1093/cid/cir644. Epub 2011 Oct 5. PubMed PMID: 21976464; PubMed Central PMCID: PMC3202315.

Charu V, Viboud C, Simonsen L, Sturm-Ramirez K, Shinjoh M, Chowell G, Miller M, Sugaya N. Influenza-related mortality trends in Japanese and American seniors: evidence for the indirect mortality benefits of vaccinating schoolchildren. PLoS One. 2011;6(11):e26282. doi: 10.1371/journal.pone.0026282. Epub 2011 Nov 7. PubMed PMID: 22087226; PubMed Central PMCID: PMC3210121.

Stine MJ, Wang CJ, Moriarty WF, Ryu B, Cheong R, Westra WH, Levchenko A, Alani RM. Integration of genotypic and phenotypic screening reveals molecular mediators of melanoma-stromal interaction. Cancer Res. 2011 Apr 1;71(7):2433-44. Epub 2011 Feb 15. PubMed PMID: 21324919; PubMed Central PMCID: PMC3070809.

Hur EM, Yang IH, Kim DH, Byun J, Saijilafu, Xu WL, Nicovich PR, Cheong R, Levchenko A, Thakor N, Zhou FQ. Engineering neuronal growth cones to promote axon regeneration over inhibitory molecules. Proc Natl Acad Sci U S A. 2011 Mar 22;108(12):5057-62. Epub 2011 Mar 7. PubMed PMID: 21383151; PubMed Central PMCID: PMC3064397.

Cheong R, Rhee A, Wang CJ, Nemenman I, Levchenko A. Information transduction capacity of noisy biochemical signaling networks. Science. 2011 Oct 21;334(6054):354-8. Epub 2011 Sep 15. PubMed PMID: 21921160.

Pramanik D, Campbell NR, Karikari C, Chivukula R, Kent OA, Mendell JT, Maitra A. Restitution of tumor suppressor microRNAs using a systemic nanovector inhibits pancreatic cancer growth in mice. Mol Cancer Ther. 2011 May 27. [Epub ahead of print] PubMed PMID: 21622730.

Mendell JT, Mendell KA, Chivukula RR, et al. 2011.  “Compositions and methods for treating hepatic neoplasia.”   US Patent Application 2011/0301226A1, Dec. 8 2011.

Platz EA, Yegnasubramanian S, Liu JO, Chong CR, Shim JS, Kenfield SA, Stampfer MJ, Willett WC, Giovannucci E, Nelson WG. A novel two-stage, transdisciplinary study identifies digoxin as a possible drug for prostate cancer treatment. Cancer Discov. 2011 Jun;1(1):68-77. doi: 10.1158/2159-8274.CD-10-0020. PubMed PMID: 22140654; PubMed Central PMCID: PMC3227223.

Christman AL, Matsushita K, Gottesman RF, Mosley T, Alonso A, Coresh J, Hill-Briggs F, Sharrett AR, Selvin E. Glycated haemoglobin and cognitive decline: the Atherosclerosis Risk in Communities (ARIC) study. Diabetologia. 2011 Jul;54(7):1645-52. Epub 2011 Mar 1. PubMed PMID: 21360189.

Christman AL, Selvin E, Margolis DJ, Lazarus GS, Garza LA. Hemoglobin A1c  predicts healing rate in diabetic wounds. J Invest Dermatol. 2011 Oct;131(10):2121-7. doi: 10.1038/jid.2011.176. Epub 2011 Jun 23. PubMed PMID: 21697890; PubMed Central PMCID: PMC3174328.

Christman AL, Lazo M, Clark JM, Selvin E. Low glycated hemoglobin and liver disease in the U.S. population. Diabetes Care. 2011 Dec;34(12):2548-50. Epub 2011 Sep 27. PubMed PMID: 21953797; PubMed Central PMCID: PMC3220829.

Pierfelice TJ, Schreck KC, Dang L, Asnaghi L, Gaiano N, Eberhart CG. Notch3 activation promotes invasive glioma formation in a tissue site-specific manner. Cancer Res. 2011 Feb 1;71(3):1115-25. Epub 2011 Jan 18. PubMed PMID: 21245095; PubMed Central PMCID: PMC3076023.

Drummond R, Song D, Hawisher D, Wolf PL, Vazquez DE, F Nino D, Coimbra R, Cauvi DM, De Maio A. Acute Acalculous Cholecystitis-Like Phenotype in Scavenger Receptor A Knock-Out Mice. J Surg Res. 2011 Jan 22. [Epub ahead of print] PubMed PMID: 21474146.

Esteso P, Gearhart JD. The use of human embryonic stem cells in drug discovery. Counterpoint. Clin Pharmacol Ther. 2011 May;89(5):641-3. PubMed PMID: 21512522.

Snipes SA, Sellers SL, Tafawa AO, Cooper LA, Fields JC, Bonham VL. Is race medically relevant? A qualitative study of physicians’ attitudes about the role of race in treatment decision-making. BMC Health Serv Res. 2011 Aug 5;11:183. PubMed PMID: 21819597; PubMed Central PMCID: PMC3167748.

Walensky RP, Wood R, Fofana MO, Martinson NA, Losina E, April MD, Bassett IV,  Morris BL, Freedberg KA, Paltiel AD; Cost-Effectiveness of Preventing AIDS Complications-International Investigators. The clinical impact and cost-effectiveness of routine, voluntary HIV screening in South Africa. J Acquir  Immune Defic Syndr. 2011 Jan 1;56(1):26-35. doi: 10.1097/QAI.0b013e3181fb8f24. PubMed PMID: 21068674; PubMed Central PMCID: PMC3005842.

Coburn J, Gibson M, Bandalini PA, Laird C, Mao HQ, Moroni L, Seliktar D, Elisseeff J. Biomimetics of the Extracellular Matrix: An Integrated Three-Dimensional Fiber-Hydrogel Composite for Cartilage Tissue Engineering. Smart Struct Syst. 2011 Jan 1;7(3):213-222. PubMed PMID: 22287978; PubMed Central PMCID: PMC3266370.

Slack RD, Mott BT, Woodard LE, Tripathi A, Sullivan D, Nenortas E, Girdwood SC, Shapiro TA, Posner GH. Malaria-infected mice are completely cured by one 6 mg/kg oral dose of a new monomeric trioxane sulfide combined with mefloquine. J Med Chem. 2012 Jan 12;55(1):291-6. doi: 10.1021/jm201214d. Epub 2011 Dec 15. Erratum in: J Med Chem. 2012 Feb 23;55(4):1788. Triphati, Abhai [corrected to Tripathi, Abhai]. PubMed PMID: 22128829; PubMed Central PMCID: PMC3257372.

Harrington AW, St Hillaire C, Zweifel LS, Glebova NO, Philippidou P, Halegoua S, Ginty DD. Recruitment of actin modifiers to TrkA endosomes governs retrograde  NGF signaling and survival. Cell. 2011 Aug 5;146(3):421-34. doi: 10.1016/j.cell.2011.07.008. PubMed PMID: 21816277; PubMed Central PMCID: PMC3262169.

Ying M, Wang S, Sang Y, Sun P, Lal B, Goodwin CR, Guerrero-Cazares H, Quinones-Hinojosa A, Laterra J, Xia S. Regulation of glioblastoma stem cells by retinoic acid: role for Notch pathway inhibition. Oncogene. 2011 Mar 7. [Epub ahead of print] PubMed PMID: 21383690.

Goodwin CR, Lal B, Ho S, Woodard CL, Zhou X, Taeger A, Xia S, Laterra J. PTEN reconstitution alters glioma responses to c-Met pathway inhibition. Anticancer Drugs. 2011 Oct;22(9):905-12. doi: 10.1097/CAD.0b013e3283484750. PubMed PMID: 21654317; PubMed Central PMCID: PMC3164392.

Recinos PF, Goodwin CR, Quiñones-Hinojosa A. Foramen Magnum Tumors. In Rigamonti D (ed): Handbook of Neurosurgery , 2011

McMillan R, Goodwin CR, Hsu W, Pendleton J, McCarthy E, Wolinsky JP, Belzberg AJ. Castleman’s disease of the sacral spine. Clin Neurol Neurosurg. 2012 Apr;114(3):287-9. Epub 2011 Nov 21. PubMed PMID: 22104696.

Hu L, Gocke AR, Knapp E, Rosenzweig JM, Grishkan IV, Baxi EG, Zhang H, Margolick JB, Whartenby KA, Calabresi PA. Functional blockade of the voltage-gated potassium channel Kv1.3 mediates reversion of T effector to central memory lymphocytes through SMAD3/p21cip1 signaling. J Biol Chem. 2012 Jan 6;287(2):1261-8. Epub 2011 Nov 22. PubMed PMID: 22110135; PubMed Central PMCID: PMC3256849.

Healy ZR, Liu H, Holtzclaw WD, Talalay P. Inactivation of tautomerase activity of macrophage migration inhibitory factor by sulforaphane: a potential biomarker for anti-inflammatory intervention. Cancer Epidemiol Biomarkers Prev. 2011 Jul;20(7):1516-23. doi: 10.1158/1055-9965.EPI-11-0279. Epub 2011 May 20. PubMed PMID: 21602309; PubMed Central PMCID: PMC3132381.

Suganuma H, Fahey JW, Bryan KE, Healy ZR, Talalay P. Stimulation of phagocytosis by sulforaphane. Biochem Biophys Res Commun. 2011 Feb 4;405(1):146-51. doi: 10.1016/j.bbrc.2011.01.025. Epub 2011 Jan 8. PubMed PMID: 21219867; PubMed Central PMCID: PMC3057406.

Delgoffe GM, Pollizzi KN, Waickman AT, Heikamp E, Meyers DJ, Horton MR, Xiao B, Worley PF, Powell JD. The kinase mTOR regulates the differentiation of helper T cells through the selective activation of signaling by mTORC1 and mTORC2. Nat Immunol. 2011 Apr;12(4):295-303. Epub 2011 Feb 27. PubMed PMID: 21358638; PubMed Central PMCID: PMC3077821.

Powell JD, Pollizzi KN, Heikamp EB, Horton MR. Regulation of immune responses by mTOR. Annu Rev Immunol. 2012;30:39-68. Epub 2011 Nov 29. Review. PubMed PMID: 22136167.

Martinez EA, Shore A, Colantuoni E, Herzer K, Thompson DA, Gurses AP, Marsteller JA, Bauer L, Goeschel CA, Cleary K, Pronovost PJ, Pham JC. Cardiac surgery errors: results from the UK National Reporting and Learning System. Int J Qual Health Care. 2011 Apr;23(2):151-8. doi: 10.1093/intqhc/mzq084. Epub 2011 Jan 10. PubMed PMID: 21224272.

Mayo-Wilson E, Imdad A, Herzer K, Yakoob MY, Bhutta ZA. Vitamin A supplements for preventing mortality, illness, and blindness in children aged under 5: systematic review and meta-analysis. BMJ. 2011 Aug 25;343:d5094. doi: 10.1136/bmj.d5094. Review. PubMed PMID: 21868478; PubMed Central PMCID: PMC3162042.

Mayo-Wilson E, Imdad A, Herzer K, Yakoob MY, Bhutta ZA. Vitamin A supplementation for preventing morbidity and mortality in children from 6 months to 5 years of age. J Evid Based Med. 2011 May;4(2):141. doi: 10.1111/j.1756-5391.2011.01129.x. PubMed PMID: 23672706.

Ho GP, Selvakumar B, Mukai J, Hester LD, Wang Y, Gogos JA, Snyder SH. S-nitrosylation and S-palmitoylation reciprocally regulate synaptic targeting of PSD-95. Neuron. 2011 Jul 14;71(1):131-41. PubMed PMID: 21745643; PubMed Central PMCID: PMC3181141.

Howard DL, Strobino D, Sherman SG, Crum RM. Maternal incarceration during pregnancy and infant birthweight. Matern Child Health J. 2011 May;15(4):478-86.PubMed PMID: 20422272.

Hsu CC, Kao WL, Steffes MW, Gambir T, Brancati FL, Heilig CW, Shuldiner AR, Boerwinkle EA, Coresh J. Genetic variation of glucose transporter-1 (GLUT1) and albuminuria in 10,278 European Americans and African Americans: a case-control study in the Atherosclerosis Risk in Communities (ARIC) study. BMC Med Genet. 2011 Jan 19;12:16. PubMed PMID: 21247498; PubMed Central PMCID: PMC3034664.

Hubbi ME, Luo W, Baek JH, Semenza GL. MCM proteins are negative regulators of  hypoxia-inducible factor 1. Mol Cell. 2011 Jun 10;42(5):700-12. doi: 10.1016/j.molcel.2011.03.029. PubMed PMID: 21658608; PubMed Central PMCID: PMC3131976.

Johnson TV, Bull ND, Martin KR. Stem cell therapy for glaucoma: possibilities and practicalities. Expert Rev Ophthalmol. 2011 Apr 1;6(2):165-174. PubMed PMID: 21686079; PubMed Central PMCID: PMC3114633.

Johnson TV, Martin KR. Broadening our focus in the search for cell transplantation-based glaucoma therapies. Eye (Lond). 2011 May;25(5):541-3. doi: 10.1038/eye.2011.63. PubMed PMID: 21562584; PubMed Central PMCID: PMC3171261.

Bull ND, Johnson TV, Welsapar G, DeKorver NW, Tomarev SI, Martin KR. Use of an adult rat retinal explant model for screening of potential retinal ganglion cell neuroprotective therapies. Invest Ophthalmol Vis Sci. 2011 May 17;52(6):3309-20. doi: 10.1167/iovs.10-6873. PubMed PMID: 21345987; PubMed Central PMCID: PMC3109030.

Kinde I, Wu J, Papadopoulos N, Kinzler KW, Vogelstein B. Detection and quantification of rare mutations with massively parallel sequencing. Proc Natl Acad Sci U S A. 2011 Jun 7;108(23):9530-5. Epub 2011 May 17. PubMed PMID: 21586637.

Chakraborty A, Werner JK Jr, Koldobskiy MA, Mustafa AK, Juluri KR, Pietropaoli J, Snowman AM, Snyder SH. Casein kinase-2 mediates cell survival through phosphorylation and degradation of inositol hexakisphosphate kinase-2. Proc Natl Acad Sci U S A. 2011 Feb 8;108(6):2205-9. Epub 2011 Jan 24. PubMed PMID: 21262846; PubMed Central PMCID: PMC3038742.

Kim S, Kim SF, Maag D, Maxwell MJ, Resnick AC, Juluri KR, Chakraborty A, Koldobskiy MA, Cha SH, Barrow R, Snowman AM, Snyder SH. Amino acid signaling to mTOR mediated by inositol polyphosphate multikinase. Cell Metab. 2011 Feb 2;13(2):215-21. PubMed PMID: 21284988; PubMed Central PMCID: PMC3042716.

Koldobskiy MA, Snyder SH. Inositol pyrophosphates in cell death and life. Cell Cycle. 2011 Feb 15;10(4):568-70. Epub 2011 Feb 15. PubMed PMID: 21293185.

Lonze BE, Dagher NN, Liu M, Kucirka LM, Simpkins CE, Locke JE, Desai NM, Cameron AM, Montgomery RA, Segev DL, Singer AL. Outcomes of renal transplants from Centers for Disease Control and Prevention high-risk donors with prospective recipient viral testing: a single-center experience. Arch Surg. 2011 Nov;146(11):1261-6. doi: 10.1001/archsurg.2011.267. PubMed PMID: 22106317.

Kucirka LM, Grams ME, Lessler J, Hall EC, James N, Massie AB, Montgomery RA, Segev DL. Association of race and age with survival among patients undergoing dialysis. JAMA. 2011 Aug 10;306(6):620-6. doi: 10.1001/jama.2011.1127. PubMed PMID: 21828325.

Kucirka LM, Grams ME, Balhara KS, Jaar BG, Segev DL. Disparities in provision of transplant information affect access to kidney transplantation. Am J Transplant. 2012 Feb;12(2):351-7. doi: 10.1111/j.1600-6143.2011.03865.x. Epub 2011 Dec 7. PubMed PMID: 22151011.

Garonzik Wang JM, Montgomery RA, Kucirka LM, Berger JC, Warren DS, Segev DL. Incompatible live-donor kidney transplantation in the United States: results of a national survey. Clin J Am Soc Nephrol. 2011 Aug;6(8):2041-6. doi: 10.2215/CJN.02940311. Epub 2011 Jul 22. PubMed PMID: 21784826; PubMed Central PMCID: PMC3156432.

Montgomery RA, Lonze BE, King KE, Kraus ES, Kucirka LM, Locke JE, Warren DS, Simpkins CE, Dagher NN, Singer AL, Zachary AA, Segev DL. Desensitization in HLA-incompatible kidney recipients and survival. N Engl J Med. 2011 Jul 28;365(4):318-26. doi: 10.1056/NEJMoa1012376. PubMed PMID: 21793744.

Kut C,  Redmond K. Spinal Radiosurgery – Current and Future Applications;  Handbook of Radiosurgery in CNS Disease; Demos Medical Publishing; September, 2011.

Wei X, Walia V, Lin JC, Teer JK, Prickett TD, Gartner J, Davis S; NISC Comparative Sequencing Program, Stemke-Hale K, Davies MA, Gershenwald JE, Robinson W, Robinson S, Rosenberg SA, Samuels Y. Exome sequencing identifies GRIN2A as frequently mutated in melanoma. Nat Genet. 2011 May;43(5):442-6. Epub 2011 Apr 15. PubMed PMID: 21499247.

Wei X, Moncada-Pazos A, Cal S, Soria-Valles C, Gartner J, Rudloff U, Lin JC; NISC Comparative Sequencing Program, Rosenberg SA, López-Otín C, Samuels Y. Analysis of the disintegrin-metalloproteinases family reveals ADAM29 and ADAM7 are often mutated in melanoma. Hum Mutat. 2011 Jun;32(6):E2148-75. doi: 10.1002/humu.21477. Epub 2011 Feb 24. PubMed PMID: 21618342; PubMed Central PMCID: PMC3103704.

Prickett TD, Wei X, Cardenas-Navia I, Teer JK, Lin JC, Walia V, Gartner J, Jiang J, Cherukuri PF, Molinolo A, Davies MA, Gershenwald JE, Stemke-Hale K, Rosenberg SA, Margulies EH, Samuels Y. Exon capture analysis of G protein-coupled receptors identifies activating mutations in GRM3 in melanoma. Nat Genet. 2011 Sep 25;43(11):1119-26. doi: 10.1038/ng.950. PubMed PMID: 21946352; PubMed Central PMCID: PMC3376644.

Liu MM, Agrón E, Chew E, Meyerle C, Ferris FL 3rd, Chan CC, Tuo J. Copy number variations in candidate genes in neovascular age-related macular degeneration. Invest Ophthalmol Vis Sci. 2011 May 16;52(6):3129-35. doi: 10.1167/iovs.10-6735.  PubMed PMID: 21273533; PubMed Central PMCID: PMC3109020.

Liu MM, Tuo J, Chan CC. Republished review: Gene therapy for ocular diseases. Postgrad Med J. 2011 Jul;87(1029):487-95. doi: 10.1136/pgmj.2009.174912rep. PubMed PMID: 21705775; PubMed Central PMCID: PMC3172160.

Chan CC, Liu MM, Tsai JC. The first Western-style hospital in China. Arch Ophthalmol. 2011 Jun;129(6):791-7. doi: 10.1001/archophthalmol.2011.120. PubMed PMID: 21670348; PubMed Central PMCID: PMC3158239.

Stewart EV, Lloyd SJ, Burg JS, Nwosu CC, Lintner RE, Daza R, Russ C, Ponchner  K, Nusbaum C, Espenshade PJ. Yeast sterol regulatory element-binding protein (SREBP) cleavage requires Cdc48 and Dsc5, a ubiquitin regulatory X domain-containing subunit of the Golgi Dsc E3 ligase. J Biol Chem. 2012 Jan 2;287(1):672-81. doi: 10.1074/jbc.M111.317370. Epub 2011 Nov 15. PubMed PMID:  22086920; PubMed Central PMCID: PMC3249121.

Long SS, Long C, Lai H, Macura KJ. Imaging strategies for right lower quadrant pain in pregnancy. AJR Am J Roentgenol. 2011 Jan;196(1):4-12. Review. PubMed PMID: 21178041.

Liu G, Moake M, Har-el YE, Long CM, Chan KW, Cardona A, Jamil M, Walczak P, Gilad AA, Sgouros G, van Zijl PC, Bulte JW, McMahon MT. In vivo multicolor molecular MR imaging using diamagnetic chemical exchange saturation transfer liposomes. Magn Reson Med. 2012 Apr;67(4):1106-13. doi: 10.1002/mrm.23100. Epub 2011 Aug 23. PubMed PMID: 22392814; PubMed Central PMCID: PMC3522097.

Long CM, Bulte, JWM.  In vivo imaging of vaccine nanoparticles;  Nanoimaging;  Pan Stanford Publishing 2011.

Arifin DR, Long CM, Gilad AA, Alric C, Roux S, Tillement O, Link TW, Arepally  A, Bulte JW. Trimodal gadolinium-gold microcapsules containing pancreatic islet cells restore normoglycemia in diabetic mice and can be tracked by using US, CT, and positive-contrast MR imaging. Radiology. 2011 Sep;260(3):790-8. doi: 10.1148/radiol.11101608. Epub 2011 Jul 6. PubMed PMID: 21734156; PubMed Central PMCID: PMC3157003.

Mao CP, He L, Tsai YC, Peng S, Kang TH, Pang X, Monie A, Hung CF, Wu TC. In vivo microRNA-155 expression influences antigen-specific T cell-mediated immune responses generated by DNA vaccination. Cell Biosci. 2011 Jan 18;1(1):3. PubMed PMID: 21711593; PubMed Central PMCID: PMC3116247.

Kim S, Kim SF, Maag D, Maxwell MJ, Resnick AC, Juluri KR, Chakraborty A, Koldobskiy MA, Cha SH, Barrow R, Snowman AM, Snyder SH. Amino acid signaling to mTOR mediated by inositol polyphosphate multikinase. Cell Metab. 2011 Feb 2;13(2):215-21. PubMed PMID: 21284988; PubMed Central PMCID: PMC3042716.

Maag D, Maxwell MJ, Hardesty DA, Boucher KL, Choudhari N, Hanno AG, Ma JF, Snowman AS, Pietropaoli JW, Xu R, Storm PB, Saiardi A, Snyder SH, Resnick AC. Inositol polyphosphate multikinase is a physiologic PI3-kinase that activates Akt/PKB. Proc Natl Acad Sci U S A. 2011 Jan 25;108(4):1391-6. Epub 2011 Jan 10. PubMed PMID: 21220345; PubMed Central PMCID: PMC3029688.

McMillan R, Goodwin CR, Hsu W, Pendleton J, McCarthy E, Wolinsky JP, Belzberg AJ. Castleman’s disease of the sacral spine. Clin Neurol Neurosurg. 2012 Apr;114(3):287-9. Epub 2011 Nov 21. PubMed PMID: 22104696.

Subramaniam S, Napolitano F, Mealer RG, Kim S, Errico F, Barrow R, Shahani N, Tyagi R, Snyder SH, Usiello A. Rhes, a striatal-enriched small G protein, mediates mTOR signaling and L-DOPA-induced dyskinesia. Nat Neurosci. 2011 Dec 18;15(2):191-3. doi: 10.1038/nn.2994. PubMed PMID: 22179112; PubMed Central PMCID: PMC3267880.

Jin L, Baker B, Mealer R, Cohen L, Pieribone V, Pralle A, Hughes T. Random insertion of split-cans of the fluorescent protein venus into Shaker channels yields voltage sensitive probes with improved membrane localization in mammalian cells. J Neurosci Methods. 2011 Jul 15;199(1):1-9. doi: 10.1016/j.jneumeth.2011.03.028. Epub 2011 Apr 8. PubMed PMID: 21497167; PubMed Central PMCID: PMC3281265.

Rosenblatt A, Kumar BV, Mo A, Welsh CS, Margolis RL, Ross CA. Age, CAG repeat length, and clinical progression in Huntington’s disease. Mov Disord. 2012 Feb;27(2):272-6. doi: 10.1002/mds.24024. Epub 2011 Dec 15. PubMed PMID: 22173986.

Liu G, Moake M, Har-el YE, Long CM, Chan KW, Cardona A, Jamil M, Walczak P, Gilad AA, Sgouros G, van Zijl PC, Bulte JW, McMahon MT. In vivo multicolor molecular MR imaging using diamagnetic chemical exchange saturation transfer liposomes. Magn Reson Med. 2012 Apr;67(4):1106-13. doi: 10.1002/mrm.23100. Epub 2011 Aug 23. PubMed PMID: 22392814; PubMed Central PMCID: PMC3522097.

Mathé E, Nguyen GH, Funamizu N, He P, Moake M, Croce CM, Hussain SP. Inflammation regulates microRNA expression in cooperation with p53 and nitric oxide. Int J Cancer. 2012 Aug 1;131(3):760-5. doi: 10.1002/ijc.26403. Epub 2011 Nov 1. PubMed PMID: 22042537; PubMed Central PMCID: PMC3299894.

Morris M, Maeda S, Vossel K, Mucke L. The many faces of tau. Neuron. 2011 May 12;70(3):410-26. PubMed PMID: 21555069.

Morris M, Koyama A, Masliah E, Mucke L. Tau reduction does not prevent motor deficits in two mouse models of Parkinson’s disease. PLoS One. 2011;6(12):e29257. Epub 2011 Dec 19. PubMed PMID: 22206005; PubMed Central PMCID: PMC3242771.

Chakraborti D, Das B, Murrill MT. Examining India’s groundwater quality management. Environ Sci Technol. 2011 Jan 1;45(1):27-33. doi: 10.1021/es101695d. Epub 2010 Nov 18. PubMed PMID: 21087025.

Chakraborty A, Werner JK Jr, Koldobskiy MA, Mustafa AK, Juluri KR, Pietropaoli J, Snowman AM, Snyder SH. Casein kinase-2 mediates cell survival through phosphorylation and degradation of inositol hexakisphosphate kinase-2. Proc Natl Acad Sci U S A. 2011 Feb 8;108(6):2205-9. Epub 2011 Jan 24. PubMed PMID: 21262846; PubMed Central PMCID: PMC3038742.

Mustafa AK, Sikka G, Gazi SK, Steppan J, Jung SM, Bhunia AK, Barodka VM, Gazi FK, Barrow RK, Wang R, Amzel LM, Berkowitz DE, Snyder SH. Hydrogen sulfide as endothelium-derived hyperpolarizing factor sulfhydrates potassium channels. Circ Res. 2011 Nov 11;109(11):1259-68. doi: 10.1161/CIRCRESAHA.111.240242. Epub 2011 Oct 6. PubMed PMID: 21980127; PubMed Central PMCID: PMC3234531.

Wilson BA, Wang H, Nacev BA, Mease RC, Liu JO, Pomper MG, Isaacs WB. High-Throughput Screen Identifies Novel Inhibitors of Cancer Biomarker {alpha}-Methylacyl Coenzyme A Racemase (AMACR/P504S). Mol Cancer Ther. 2011 May;10(5):825-38. Epub 2011 Mar 25. PubMed PMID: 21441411.

Nacev B, Low WK, Huang Z, Su T, Su Z, Alkuraya H, Kasuga D, Sun W, Trager M,Braun M, Fischer G, Zhang K, Liu JO. A calcineurin-independent mechanism of angiogenesis inhibition by a non-immunosuppressive Cyclosporin A analog. J Pharmacol Exp Ther. 2011 May 11. [Epub ahead of print] PubMed PMID: 21562139.

Shi W, Nacev BA, Aftab BT, Head S, Rudin CM, Liu JO. Itraconazole side chain analogues: structure-activity relationship studies for inhibition of endothelial cell proliferation, vascular endothelial growth factor receptor 2 (VEGFR2) glycosylation, and hedgehog signaling. J Med Chem. 2011 Oct 27;54(20):7363-74. Epub 2011 Oct 5. PubMed PMID: 21936514; PubMed Central PMCID: PMC3307530.

Nacev BA, Liu JO. Synergistic inhibition of endothelial cell proliferation, tube formation, and sprouting by cyclosporin A and itraconazole. PLoS One. 2011;6(9):e24793. Epub 2011 Sep 28. PubMed PMID: 21969860; PubMed Central PMCID: PMC3182171.

Nacev BA, Grassi P, Dell A, Haslam SM, Liu JO. The antifungal drug itraconazole inhibits vascular endothelial growth factor receptor 2 (VEGFR2) glycosylation, trafficking, and signaling in endothelial cells. J Biol Chem. 2011 Dec 23;286(51):44045-56. Epub 2011 Oct 24. PubMed PMID: 22025615; PubMed Central  PMCID: PMC3243534.

Parry EM, Alder JK, Qi X, Chen JJ, Armanios M. Syndrome complex of bone marrow failure and pulmonary fibrosis predicts germline defects in telomerase. Blood. 2011 May 26;117(21):5607-11. Epub 2011 Mar 24. PubMed PMID: 21436073.

Guo N, Parry EM, Li LS, Kembou F, Lauder N, Hussain MA, Berggren PO, Armanios M. Short telomeres compromise β-cell signaling and survival. PLoS One. 2011 Mar 10;6(3):e17858. PubMed PMID: 21423765; PubMed Central PMCID: PMC3053388.

Parry EM, Alder JK, Lee SS, Phillips JA 3rd, Loyd JE, Duggal P, Armanios M. Decreased dyskerin levels as a mechanism of telomere shortening in X-linked dyskeratosis congenita. J Med Genet. 2011 May;48(5):327 -33. Epub 2011 Mar 17. PubMed PMID: 21415081; PubMed Central PMCID: PMC3088476.

Alder JK, Guo N, Kembou F, Parry EM, Anderson CJ, Gorgy AI, Walsh MF, Sussan T, Biswal S, Mitzner W, Tuder RM, Armanios M. Telomere length is a determinant of emphysema susceptibility. Am J Respir Crit Care Med. 2011 Oct 15;184(8):904-12. doi: 10.1164/rccm.201103-0520OC. Epub 2011 Jul 14. PubMed PMID: 21757622; PubMed  Central PMCID: PMC3208661.

McMillan R, Goodwin CR, Hsu W, Pendleton J, McCarthy E, Wolinsky JP, Belzberg AJ. Castleman’s disease of the sacral spine. Clin Neurol Neurosurg. 2012 Apr;114(3):287-9. Epub 2011 Nov 21. PubMed PMID: 22104696.

Spivak AM, Rabi SA, McMahon MA, Shan L, Sedaghat AR, Wilke CO, Siliciano RF. Dynamic Constraints on the Second Phase Compartment of HIV-Infected Cells. AIDS Res Hum Retroviruses. 2011 Jan 15. [Epub ahead of print] PubMed PMID: 21105850.

Shan L, Yang HC, Rabi SA, Bravo HC, Shroff NS, Irizarry RA, Zhang H, Margolick JB, Siliciano JD, Siliciano RF. Influence of host gene transcription level and orientation on HIV-1 latency in a primary-cell model. J Virol. 2011 Jun;85(11):5384-93. Epub 2011 Mar 23. PubMed PMID: 21430059.

Shen L, Rabi SA, Sedaghat AR, Shan L, Lai J, Xing S, Siliciano RF. A critical subset model provides a conceptual basis for the high antiviral activity of major HIV drugs. Sci Transl Med. 2011 Jul 13;3(91):91ra63. PubMed PMID: 21753122.

Spivak AM, Salgado M, Rabi SA, O’Connell KA, Blankson JN. Circulating monocytes are not a major reservoir of HIV-1 in elite suppressors. J Virol. 2011 Oct;85(19):10399-403. Epub 2011 Jul 27. PubMed PMID: 21795348; PubMed Central PMCID: PMC3196433.

O’Connell KA, Rabi SA, Siliciano RF, Blankson JN. CD4+ T cells from elite suppressors are more susceptible to HIV-1 but produce fewer virions than cells from chronic progressors. Proc Natl Acad Sci U S A. 2011 Sep 13;108(37):E689-98. Epub 2011 Aug 22. PubMed PMID: 21873218; PubMed Central PMCID: PMC3174588.

Salgado M, Rabi SA, O’Connell KA, Buckheit RW 3rd, Bailey JR, Chaudhry AA, Breaud AR, Marzinke MA, Clarke W, Margolick JB, Siliciano RF, Blankson JN. Prolonged control of replication-competent dual- tropic human immunodeficiency virus-1 following cessation of highly active antiretroviral therapy. Retrovirology. 2011 Dec 5;8:97. PubMed PMID: 22141397; PubMed Central PMCID: PMC3293762.

Shen CJ, Raghavan S, Xu Z, Baranski JD, Yu X, Wozniak MA, Miller JS, Gupta M, Buckbinder L, Chen CS. Decreased cell adhesion promotes angiogenesis in a Pyk2-dependent manner. Exp Cell Res. 2011 Aug 1;317 (13):1860-71. Epub 2011 May 18. PubMed PMID: 21640103; PubMed Central PMCID: PMC3123418.

Sabharwal P, Lee C, Park S, Rao M, Sockanathan S. GDE2 regulates subtype-specific motor neuron generation through inhibition of Notch signaling. Neuron. 2011 Sep 22;71(6):1058-70. doi: 10.1016/j.neuron.2011.07.028. Epub 2011 Sep 21. PubMed PMID: 21943603; PubMed Central PMCID: PMC3183458.

Vaughn MP, Biswal Shinohara D, Castagna N, Hicks JL, Netto G, De Marzo AM, Speed TJ, Reichert ZR, Kwabi-Addo B, Henderson CJ, Wolf CR, Yegnasubramanian S, Nelson WG. Humanizing π-class glutathione S-transferase regulation in a mouse model alters liver toxicity in response to acetaminophen overdose. PLoS One. 2011;6(10):e25707. doi: 10.1371/journal.pone.0025707. Epub 2011 Oct 11. PubMed PMID: 22022436; PubMed Central PMCID: PMC3191143.

Sampah ME, Shen L, Jilek BL, Siliciano RF. Dose-response curve slope is a missing dimension in the analysis of HIV-1 drug resistance. Proc Natl Acad Sci U S A. 2011 May 3;108(18):7613-8. doi: 10.1073/pnas.1018360108. Epub 2011 Apr 18. PubMed PMID: 21502494; PubMed Central PMCID: PMC3088572.

Pierfelice TJ, Schreck KC, Dang L, Asnaghi L, Gaiano N, Eberhart CG. Notch3 activation promotes invasive glioma formation in a tissue site-specific manner. Cancer Res. 2011 Feb 1;71(3):1115-25. Epub 2011 Jan 18. PubMed PMID: 21245095; PubMed Central PMCID: PMC3076023.

Schroeder JL, Bakalar M, Pohida TJ, Balaban RS. Rapid overlapping-volume acquisition and reconstruction (ROVAR): automated 3D tiling for high-resolution, large field-of-view optical microscopy. J Microsc. 2011 243:103-10. PMID21348869; PMC3115409.

Combs CA, Smirnov A, Chess D, McGavern DB, Schroeder JL, Riley J, Kang SS, Lugar-Hammer M, Gandjbakhche A, Knutson JR, Balaban RS. Optimizing multiphoton fluorescence microscopy light collection from living tissue by noncontact total emission detection (epiTED). J Microsc. 2011 241:153-61. PMID21118209; PMC3518454.

Spivak AM, Rabi SA, McMahon MA, Shan L, Sedaghat AR, Wilke CO, Siliciano RF. Short communication: dynamic constraints on the second phase compartment of HIV-infected cells. AIDS Res Hum Retroviruses. 2011 Jul;27(7):759-61. doi: 10.1089/AID.2010.0199. Epub 2011 Jan 15. PubMed PMID: 21105850; PubMed Central PMCID: PMC3123527.

Shen L, Rabi SA, Sedaghat AR, Shan L, Lai J, Xing S, Siliciano RF. A critical subset model provides a conceptual basis for the high antiviral activity of major HIV drugs. Sci Transl Med. 2011 Jul 13;3(91):91ra63. doi: 10.1126/scitranslmed.3002304. PubMed PMID: 21753122; PubMed Central PMCID: PMC3488347.

Shannon K , Lawrence RS. Anthropogenic Sources of Water Pollution, Part 1. In Water and Sanitation-Related Diseases and the Environment: Challenges, Interventions and Preventive Measures, ed. J. Selendy. John Wiley & Sons: 2011, p. 289-302.

Shapiro AE, Tshabangu N, Golub JE, Martinson NA. Intention to quit smoking among human immunodeficiency virus infected adults in Johannesburg, South Africa. Int J Tuberc Lung Dis. 2011 Jan;15(1):140-2. PubMed PMID: 21276312.

Novikov A, Cardone M, Thompson R, Shenderov K, Kirschman KD, Mayer-Barber KD, Myers TG, Rabin RL, Trinchieri G, Sher A, Feng CG. Mycobacterium tuberculosis triggers host type I IFN signaling to regulate IL-1β production in human macrophages. J Immunol. 2011 Sep 1;187(5):2540-7. doi: 10.4049/jimmunol.1100926.  Epub 2011 Jul 22. PubMed PMID: 21784976; PubMed Central PMCID: PMC3159798.

Vaughn MP, Biswal Shinohara D, Castagna N, Hicks JL, Netto G, De Marzo AM, Speed TJ, Reichert ZR, Kwabi-Addo B, Henderson CJ, Wolf CR, Yegnasubramanian S, Nelson WG. Humanizing π-Class Glutathione S-Transferase Regulation in a Mouse Model Alters Liver Toxicity in Response to Acetaminophen Overdose. PLoS One. 2011;6(10):e25707. Epub 2011 Oct 11. PubMed PMID: 22022436; PubMed Central PMCID: PMC3191143.

Bhise NS, Shmueli RB, Sunshine JC, Tzeng SY, Green JJ. Drug delivery strategies for therapeutic angiogenesis and antiangiogenesis. Expert Opin Drug Deliv. 2011 Apr;8(4):485-504. Epub 2011 Feb 22. PubMed PMID: 21338327.

Tzeng SY, Guerrero-Cázares H, Martinez EE, Sunshine JC, Quiñones-Hinojosa A, Green JJ. Non-viral gene delivery nanoparticles based on Poly(β-amino esters) for treatment of glioblastoma. Biomaterials. 2011 Aug;32(23):5402-10. Epub 2011 May 4. PubMed PMID: 21536325.

Sunshine JC, Bishop CJ, Green JJ. Advances in polymeric and inorganic vectors  for nonviral nucleic acid delivery. Ther Deliv. 2011 Apr;2(4):493-521. Review. PubMed PMID: 22826857.

Sunshine JC, Akanda MI, Li D, Kozielski KL, Green JJ. Effects of base polymer  hydrophobicity and end-group modification on polymeric gene delivery. Biomacromolecules. 2011 Oct 10;12(10):3592-600. Epub 2011 Sep 9. PubMed PMID: 21888340.

Konishi H, Mohseni M, Tamaki A, Garay JP, Croessmann S, Karnan S, Ota A, Wong HY, Konishi Y, Karakas B, Tahir K, Abukhdeir AM, Gustin JP, Cidado J, Wang GM, Cosgrove D, Cochran R, Jelovac D, Higgins MJ, Arena S, Hawkins L, Lauring J, Gross AL, Heaphy CM, Hosokawa Y, Gabrielson E, Meeker AK, Visvanathan K, Argani P, Bachman KE, Park BH. Mutation of a single allele of the cancer susceptibility gene BRCA1 leads to genomic instability in human breast epithelial cells. Proc Natl Acad Sci U S A. 2011 Oct 25;108(43):17773-8. Epub 2011 Oct 10. PubMed PMID: 21987798; PubMed Central PMCID: PMC3203756.

Higgins MJ, Beaver JA, Wong HY, Gustin JP, Lauring JD, Garay JP, Konishi H, Mohseni M, Wang GM, Cidado J, Jelovac D, Cosgrove DP, Tamaki A, Abukhdeir AM,Park BH. PIK3CA mutations and EGFR overexpression predict for lithium sensitivity in human breast epithelial cells. Cancer Biol Ther. 2011 Feb 1;11(3):358-67. Epub 2011 Feb 1. PubMed PMID: 21124076; PubMed Central PMCID: PMC3047087.

Ho GP, Selvakumar B, Mukai J, Hester LD, Wang Y, Gogos JA, Snyder SH. S-nitrosylation and S-palmitoylation reciprocally regulate synaptic targeting of  PSD-95. Neuron. 2011 Jul 14;71(1):131-41. PubMed PMID: 21745643; PubMed Central PMCID: PMC3181141.

Chakraborty A, Werner JK Jr, Koldobskiy MA, Mustafa AK, Juluri KR, Pietropaoli J, Snowman AM, Snyder SH. Casein kinase-2 mediates cell survival through phosphorylation and degradation of inositol hexakisphosphate kinase-2. Proc Natl Acad Sci U S A. 2011 Feb 8;108(6):2205-9. Epub 2011 Jan 24. PubMed PMID: 21262846; PubMed Central PMCID: PMC3038742.

Guo T, Mandai K, Condie BG, Wickramasinghe SR, Capecchi MR, Ginty DD. An evolving NGF-Hoxd1 signaling pathway mediates development of divergent neural circuits in vertebrates. Nat Neurosci. 2011 Jan;14 (1):31-6. Epub 2010 Dec 12. PubMed PMID: 21151121.

Wylie L, Philpott A. Neuroblastoma progress on many fronts: the Neuroblastoma Research Symposium. Pediatr Blood Cancer. 2012 Apr;58(4):649-51. doi: 10.1002/pbc.23329. Epub 2011 Sep 15. PubMed PMID: 21922652; PubMed Central PMCID: PMC3243773.

Xu R, Solakoglu C, Kretzer RM, McGirt MJ, Witham TF, Bydon A. Bilateral traumatic dislocation without fracture of the lumbosacral junction: case report and review of the literature. Spine (Phila Pa 1976). 2011 May 1;36(10):E662-8. PubMed PMID: 21358473.

Maag D, Maxwell MJ, Hardesty DA, Boucher KL, Choudhari N, Hanno AG, Ma JF, Snowman AS, Pietropaoli JW, Xu R, Storm PB, Saiardi A, Snyder SH, Resnick AC. Inositol polyphosphate multikinase is a physiologic PI3-kinase that activates Akt/PKB. Proc Natl Acad Sci U S A. 2011 Jan 25;108(4):1391-6. Epub 2011 Jan 10. PubMed PMID: 21220345; PubMed Central PMCID: PMC3029688.

Xu R, Solakoglu C, Maleki Z, McGirt MJ, Gokaslan ZL, Bydon A. Hemorrhagic synovial cyst: the possible role of initial trauma and subsequent microtrauma in its pathogenesis: case report. Neurosurgery. 2011 Mar;68(3):E858-65; discussion E865. Review. PubMed PMID: 21311282.

Xu R, Shukairy MS, Bydon A. “”Penetrating Brain Injury.”" Handbook of Neurosurgery. Ed. Daniele Rigamonti.  PUBLISHED BOOK CHAPTER – 2011

Xu R, Bydon A. “Lumbar Disc Hernation.” Handbook of Neurosurgery. Ed. Daniele Rigamonti.  PUBLISHED BOOK CHAPTER – 2011

Xu R, Ritzl EK, Sait M, Sciubba DM, Wolinsky JP, Witham TF, Gokaslan ZL, Bydon A. A role for motor and somatosensory evoked potentials during anterior cervical discectomy and fusion for patients without myelopathy: Analysis of 57 consecutive cases. Surg Neurol Int. 2011;2:133. Epub 2011 Sep 30. PubMed PMID: 22059128; PubMed Central PMCID: PMC3205491.

Xu R, Bydon M, Sciubba DM, Witham TF, Wolinsky JP, Gokaslan ZL, Bydon A.  Safety and efficacy of rhBMP2 in posterior cervical spinal fusion for subaxial degenerative spine disease: Analysis of outcomes in 204 patients. Surg Neurol Int. 2011;2:109. Epub 2011 Aug 13. PubMed PMID: 21886882; PubMed Central PMCID: PMC3162798.

Zabransky DJ, Smith HA, Thoburn CJ, Zahurak M, Keizman D, Carducci M, Eisenberger MA, McNeel DG, Drake CG, Antonarakis ES. Lenalidomide modulates IL-8 and anti-prostate antibody levels in men with biochemically recurrent prostate cancer. Prostate. 2012 Apr;72(5):487-98. doi: 10.1002/pros.21449. Epub 2011 Jul 11. PubMed PMID: 21748755; PubMed Central PMCID: PMC3248613.

Westbroek W, Klar A, Cullinane AR, Ziegler SG, Hurvitz H, Ganem A, Wilson K, Dorward H, Huizing M, Tamimi H, Vainshtein I, Berkun Y, Lavie M, Gahl WA, Anikster Y. Cellular and clinical report of new Griscelli syndrome type III cases. Pigment Cell Melanoma Res. 2012 Jan;25(1):47-56. doi: 10.1111/j.1755-148X.2011.00901.x. Epub 2011 Oct 3. PubMed PMID: 21883982; PubMed  Central PMCID: PMC3265394.

St Hilaire C, Ziegler SG, Markello TC, Brusco A, Groden C, Gill F, Carlson-Donohoe H, Lederman RJ, Chen MY, Yang D, Siegenthaler MP, Arduino C, Mancini C, Freudenthal B, Stanescu HC, Zdebik AA, Chaganti RK, Nussbaum RL, Kleta R, Gahl WA, Boehm M. NT5E mutations and arterial calcifications. N Engl J Med. 2011 Feb 3;364(5):432-42. doi: 10.1056/NEJMoa0912923. PubMed PMID: 21288095; PubMed Central PMCID: PMC3049958.

Markello TC, Pak LK, St Hilaire C, Dorward H, Ziegler SG, Chen MY, Chaganti K, Nussbaum RL, Boehm M, Gahl WA. Vascular pathology of medial arterial calcifications in NT5E deficiency: implications for the role of adenosine in pseudoxanthoma elasticum. Mol Genet Metab. 2011 May;103(1):44-50. doi: 10.1016/j.ymgme.2011.01.018. Epub 2011 Feb 3. PubMed PMID: 21371928; PubMed Central PMCID: PMC3081917.

Markello TC, St Hilaire C, Ziegler SG, Nussbaum RL, Boehm M, Gahl WA. Reply to Professor Lefthériotis et al. Mol Genet Metab. 2011 Jul;103(3):305. doi: 10.1016/j.ymgme.2011.04.008. Epub 2011 Apr 22. PubMed PMID: 21592834.

2010 (MD-PhD student bolded/italics)

Barnett BP, Ruiz-Cabello J, Hota P, Liddell R, Walczak P, Howland V, Chacko VP, Kraitchman DL, Arepally A, Bulte JW. Fluorocapsules for improved function, immunoprotection, and visualization of cellular therapeutics with MR, US, and CT imaging. Radiology. 2011 Jan;258(1):182-91. Epub 2010 Oct 22. PubMed PMID: 20971778; PubMed Central PMCID: PMC3009379.

Barnett BP, Hwang Y, Taylor MS, Kirchner H, Pfluger PT, Bernard V, Lin YY, Bowers EM, Mukherjee C, Song WJ, Longo PA, Leahy DJ, Hussain MA, Tschöp MH, Boeke JD, Cole PA. Glucose and weight control in mice with a designed ghrelin O-acyltransferase inhibitor. Science. 2010 Dec 17;330(6011):1689-92. Epub 2010 Nov 18. PubMed PMID: 21097901; PubMed Central PMCID: PMC3068526.

Ruiz-Cabello J, Barnett BP, Bottomley PA, Bulte JW. Fluorine (19F) MRS and MRI in biomedicine. NMR Biomed. 2011 Feb;24(2):114-29. doi: 10.1002/nbm.1570. Epub 2010 Sep 15. PubMed PMID: 20842758; PubMed Central PMCID: PMC3051284.

Barnett BP, Gailloud P. Assessment of EmboGel–a selectively dissolvable radiopaque hydrogel for embolic applications. J Vasc Interv Radiol. 2011 Feb;22(2):203-11. Epub 2010 Dec 23. PubMed PMID: 21185201.

Bassik N, Brafman A, Zarafshar AM, Jamal M, Luvsanjav D, Selaru FM, Gracias DH. Enzymatically triggered actuation of miniaturized tools. J Am Chem Soc. 2010 Nov 24;132(46):16314-7. Epub 2010 Sep 17. PubMed PMID: 20849106; PubMed Central PMCID: PMC2988106.

Jamal M, Bassik N, Cho JH, Randall CL, Gracias DH. Directed growth of fibroblasts into three dimensional micropatterned geometries via self-assembling scaffolds. Biomaterials. 2010 Mar;31(7):1683-90. PubMed PMID: 20022106; PubMed Central PMCID: PMC2813973.

Bennett MK, Kulaga HM, Reed RR. Odor-evoked gene regulation and visualization in olfactory receptor neurons. Mol Cell Neurosci. 2010 Apr;43(4):353-62. Epub 2010 Jan 18. PubMed PMID: 20080187.

Burke KP, Cox AL. Hepatitis C virus evasion of adaptive immune responses: a model for viral persistence. Immunol Res. 2010 Jul;47(1-3):216-27. Review. Erratum in: Immunol Res. 2010 Jul;47(1-3):285. PubMed PMID: 20066508; PubMed Central PMCID: PMC2910517.

Feldser DM, Kostova KK, Winslow MM, Taylor SE, Cashman C, Whittaker CA, Sanchez-Rivera FJ, Resnick R, Bronson R, Hemann MT, Jacks T. Stage-specific sensitivity to p53 restoration during lung cancer progression. Nature. 2010 Nov 25;468(7323):572-5. doi: 10.1038/nature09535. PubMed PMID: 21107428; PubMed Central PMCID: PMC3003305.

Fosbrink M, Aye-Han NN, Cheong R, Levchenko A, Zhang J. Visualization of JNK activity dynamics with a genetically encoded fluorescent biosensor. Proc Natl Acad Sci U S A. 2010 Mar 23;107(12):5459-64. Epub 2010 Mar 8. PubMed PMID: 20212108; PubMed Central PMCID: PMC2851826.

Fan D, Yin Z, Cheong R, Zhu FQ, Cammarata RC, Chien CL, Levchenko A. Subcellular-resolution delivery of a cytokine through precisely manipulated nanowires. Nat Nanotechnol. 2010 Jul;5(7):545-51. Epub 2010 Jun 13. PubMed PMID: 20543835; PubMed Central PMCID: PMC3118461.

Yin Z, Tao SC, Cheong R, Zhu H, Levchenko A. An integrated micro-electro-fluidic and protein arraying system for parallel analysis of cell responses to controlled microenvironments. Integr Biol (Camb). 2010 Sep;2 (9):416-23. Epub 2010 Aug 10. PubMed PMID: 20714638.

Cheong R, Paliwal S, Levchenko A. Models at the single cell level. Wiley Interdiscip Rev Syst Biol Med. 2010 Jan-Feb;2(1):34-48. Review. PubMed PMID: 20836009.

Compani B, Su T, Chang I, Cheng J, Shah KH, Whisenant T, Dou Y, Bergmann A, Cheong R, Wold B, Bardwell L, Levchenko A, Baldi P, Mjolsness E. A scalable and integrative system for pathway bioinformatics and systems biology. Adv Exp Med Biol. 2010;680:523-34. PubMed PMID: 20865537; PubMed Central PMCID: PMC3021415.

Cheong R, Levchenko A. Oscillatory signaling processes: the how, the why and the where. Curr Opin Genet Dev. 2010 Dec;20(6):665-9. Review. PubMed PMID: 20971631.

Persat A, Chivukula RR, Mendell JT, Santiago JG. Quantification of global microRNA abundance by selective isotachophoresis. Anal Chem. 2010 Dec 1;82(23):9631-5. PubMed PMID: 21062022.

Kent OA, Chivukula RR, Mullendore M, Wentzel EA, Feldmann G, Lee KH, Liu S, Leach SD, Maitra A, Mendell JT. Repression of the miR-143/145 cluster by oncogenic Ras initiates a tumor-promoting feed-forward pathway. Genes Dev. 2010 Dec 15;24(24):2754-9. PubMed PMID: 21159816.

Shim JS, Matsui Y, Bhat S, Nacev BA, Xu J, Bhang HE, Dhara S, Han KC, Chong CR, Pomper MG, So A, Liu JO. Effect of nitroxoline on angiogenesis and growth of human bladder cancer. J Natl Cancer Inst. 2010 Dec 15;102(24):1855-73. Epub 2010 Nov 18. PubMed PMID: 21088277; PubMed Central PMCID: PMC3001967.

Chong CR. An unnecessary death in Zambia. Am J Med. 2010 Jul;123(7):669. PubMed PMID: 20609692.

Kim J, Tang JY, Gong R, Kim J, Lee JJ, Clemons KV, Chong CR, Chang KS, Fereshteh M, Gardner D, Reya T, Liu JO, Epstein EH, Stevens DA, Beachy PA. Itraconazole, a commonly used antifungal that inhibits Hedgehog pathway activity and cancer growth. Cancer Cell. 2010 Apr 13;17(4):388-99. PubMed PMID: 20385363.

Feld JJ, Modi AA, El-Diwany R, Rotman Y, Thomas E, Ahlenstiel G, Titerence R,  Koh C, Cherepanov V, Heller T, Ghany MG, Park Y, Hoofnagle JH, Liang TJ. S-adenosyl methionine improves early viral responses and interferon-stimulated gene induction in hepatitis C nonresponders. Gastroenterology. 2011 Mar;140(3):830-9. doi: 10.1053/j.gastro.2010.09.010. Epub 2010 Sep 17. PubMed PMID: 20854821; PubMed Central PMCID: PMC3021477.

Christoforou N, Oskouei BN, Esteso P, Hill CM, Zimmet JM, Bian W, Bursac N, Leong KW, Hare JM, Gearhart JD. Implantation of mouse embryonic stem cell-derived cardiac progenitor cells preserves function of infarcted murine hearts. PLoS One. 2010 Jul 12;5(7):e11536. PubMed PMID: 20634944; PubMed Central PMCID: PMC2902505.

Peng YJ, Nanduri J, Raghuraman G, Souvannakitti D, Gadalla MM, Kumar GK, Snyder SH, Prabhakar NR. H2S mediates O2 sensing in the carotid body. Proc Natl Acad Sci U S A. 2010 Jun 8;107(23):10719-24. PubMed PMID: 20556885; PubMed Central PMCID: PMC2890835.

Gadalla MM, Snyder SH. Hydrogen sulfide as a gasotransmitter. J Neurochem. 2010 Apr;113(1):14-26. Epub 2010 Jan 12. Review. PubMed PMID: 20067586; PubMed Central PMCID: PMC2965526.

Loeys BL, Gerber EE, Riegert-Johnson D, Iqbal S, Whiteman P, McConnell V, Chillakuri CR, Macaya D, Coucke PJ, De Paepe A, Judge DP, Wigley F, Davis EC, Mardon HJ, Handford P, Keene DR, Sakai LY, Dietz HC. Mutations in fibrillin-1 cause congenital scleroderma: stiff skin syndrome. Sci Transl Med. 2010 Mar 17;2(23):23ra20. PubMed PMID: 20375004; PubMed Central PMCID: PMC2953713.

Smith BJ, Sutton GM, Wu X, Yu G, Goh BC, Hebert T, Pelled G, Gazit Z, Gazit D, Butler AA, Gimble JM. Ovariectomy and genes encoding core circadian regulatory proteins in murine bone. Osteoporos Int. 2011 May;22(5):1633-9. doi: 10.1007/s00198-010-1325-z. Epub 2010 Jul 1. PubMed PMID: 20593165.

Goodwin CR, Laterra J. Neuro-oncology: unmasking the multiforme in glioblastoma. Nat Rev Neurol. 2010 Jun;6(6):304-5. PubMed PMID: 20531430.

Goodwin CR, Lal B, Zhou X, Ho S, Xia S, Taeger A, Murray J, Laterra J. Cyr61 mediates hepatocyte growth factor-dependent tumor cell growth, migration, and Akt activation. Cancer Res. 2010 Apr 1;70(7):2932-41. Epub 2010 Mar 16. PubMed PMID: 20233866; PubMed Central PMCID: PMC2848876.

Siegel ER, Lindberg DA, Campbell GP, Harless WG, Goodwin CR. Defining the next generation journal: The NLM-Elsevier interactive publications experiment. Inf Serv Use. 2010 Jan 1;30(1-2):17-30. PubMed PMID: 21165152; PubMed Central PMCID: PMC3001620.

Goodwin CR, Recinos PF, Omeis I, Momin EN, Witham TF, Bydon A, Gokaslan ZL, Wolinsky JP. Prevention of facial pressure ulcers using the Mayfield clamp for sacral tumor resection. J Neurosurg Spine. 2011 Jan;14(1):85-7. Epub 2010 Dec 3. PubMed PMID: 21142454.

Getnet D, Grosso JF, Goldberg MV, Harris TJ, Yen HR, Bruno TC, Durham NM, Hipkiss EL, Pyle KJ, Wada S, Pan F, Pardoll DM, Drake CG. A role for the transcription factor Helios in human CD4(+)CD25(+) regulatory T cells. Mol Immunol. 2010 Apr;47(7-8):1595-600. Epub 2010 Mar 11. PubMed PMID: 20226531; PubMed Central PMCID: PMC3060613.

Harris TA, Yamakuchi M, Kondo M, Oettgen P, Lowenstein CJ. Ets-1 and Ets-2 regulate the expression of microRNA-126 in endothelial cells. Arterioscler Thromb Vasc Biol. 2010 Oct;30(10):1990-7. Epub 2010 Jul 29. PubMed PMID: 20671229.

Imdad A, Herzer K, Mayo-Wilson E, Yakoob MY, Bhutta ZA. Vitamin A supplementation for preventing morbidity and mortality in children from 6 months to 5 years of age. Cochrane Database Syst Rev. 2010 Dec 8;(12):CD008524. doi: 10.1002/14651858.CD008524.pub2. Review. PubMed PMID: 21154399.

Kim PM, Duan X, Huang AS, Liu CY, Ming GL, Song H, Snyder SH. Aspartate racemase, generating neuronal D-aspartate, regulates adult neurogenesis. ProcNatl Acad Sci U S A. 2010 Feb 16;107(7):3175-9. Epub 2010 Jan 26. PubMed PMID: 20133766; PubMed Central PMCID: PMC2840285.

Chakraborty A, Koldobskiy MA, Bello NT, Maxwell M, Potter JJ, Juluri KR, Maag D, Kim S, Huang AS, Dailey MJ, Saleh M, Snowman AM, Moran TH, Mezey E, Snyder SH. Inositol pyrophosphates inhibit Akt  signaling, thereby regulating insulin sensitivity and weight gain. Cell. 2010 Dec 10;143(6):897-910. PubMed PMID: 21145457; PubMed Central PMCID: PMC3052691.

Johnson TV, Bull ND, Martin KR. Neurotrophic factor delivery as a protective treatment for glaucoma. Exp Eye Res. 2011 Aug;93(2):196-203. doi: 10.1016/j.exer.2010.05.016. Epub 2010 Jun 1. Review. PubMed PMID: 20685205.

Johnson TV, Bull ND, Martin KR. Identification of barriers to retinal engraftment of transplanted stem cells. Invest Ophthalmol Vis Sci. 2010 Feb;51(2):960-70. doi: 10.1167/iovs.09-3884. Epub 2009 Oct 22. PubMed PMID: 19850833; PubMed Central PMCID: PMC2868445.

Keenan BP, Abuav R. Acneiform eruption in a patient receiving bevacizumab for glioblastoma multiforme. Arch Dermatol. 2010 May;146(5):577. PubMed PMID: 20479324.

Leary RJ, Kinde I, Diehl F, Schmidt K, Clouser C, Duncan C, Antipova A, Lee C, McKernan K, De La Vega FM, Kinzler KW, Vogelstein B, Diaz LA Jr, Velculescu VE. Development of personalized tumor biomarkers using massively parallel sequencing. Sci Transl Med. 2010 Feb 24;2(20):20ra14. PubMed PMID: 20371490; PubMed Central PMCID: PMC2858564.

Koldobskiy MA, Chakraborty A, Werner JK Jr, Snowman AM, Juluri KR, Vandiver MS, Kim S, Heletz S, Snyder SH. p53-mediated apoptosis requires inositol hexakisphosphate kinase-2. Proc Natl Acad Sci U S A. 2010 Dec 7;107(49):20947-51. Epub 2010 Nov 15. PubMed PMID: 21078964; PubMed Central PMCID: PMC3000257.

Chakraborty A, Koldobskiy MA, Bello NT, Maxwell M, Potter JJ, Juluri KR, Maag D, Kim S, Huang AS, Dailey MJ, Saleh M, Snowman AM, Moran TH, Mezey E, Snyder SH. Inositol pyrophosphates inhibit Akt signaling, thereby regulating insulin sensitivity and weight gain. Cell. 2010 Dec 10;143(6):897-910. PubMed PMID:21145457; PubMed Central PMCID: PMC3052691.

Kornberg MD, Sen N, Hara MR, Juluri KR, Nguyen JV, Snowman AM, Law L, Hester LD, Snyder SH. GAPDH mediates nitrosylation of nuclear proteins. Nat Cell Biol. 2010 Nov;12(11):1094-100. Epub 2010 Oct 24. PubMed PMID: 20972425; PubMed Central PMCID: PMC2972384.

Tryggestad E, Christian M, Ford E, Kut C, Le Y, Sanguineti G, Song DY, Kleinberg L. Inter- and intrafraction patient positioning uncertainties for intracranial radiotherapy: a study of four frameless, thermoplastic mask-based immobilization strategies using daily cone-beam CT. Int J Radiat Oncol Biol Phys. 2011 May 1;80(1):281-90. doi: 10.1016/j.ijrobp.2010.06.022. Epub 2010 Oct 15. PubMed PMID: 20951506.

Limpitikul W,  Christoforou N, Thompson S, Gearhart J, Tung L, Lipke E. “Influence of Electromechanical Activity on Cardiac Differentiation of Mouse Embryonic Stem Cells” Cardiovascular Engineering and Technology 1(3): 179-193, (2010).

Wei X, Prickett TD, Viloria CG, Molinolo A, Lin JC, Cardenas-Navia I, Cruz P; NISC Comparative Sequencing Program, Rosenberg SA, Davies MA, Gershenwald JE, López-Otín C, Samuels Y. Mutational and functional analysis reveals ADAMTS18 metalloproteinase as a novel driver in melanoma. Mol Cancer Res. 2010 Nov;8(11):1513-25. Epub 2010 Oct 13. PubMed PMID: 21047771; PubMed Central PMCID: PMC3058631.

Parsons DW, Li M, Zhang X, Jones S, Leary RJ, Lin JC, Boca SM, Carter H, Samayoa J, Bettegowda C, Gallia GL, Jallo GI, Binder ZA, Nikolsky Y, Hartigan J, Smith DR, Gerhard DS, Fults DW, VandenBerg S, Berger MS, Marie SK, Shinjo SM, Clara C, Phillips PC, Minturn JE, Biegel JA, Judkins AR, Resnick AC, Storm PB, Curran T, He Y, Rasheed BA, Friedman HS, Keir ST, McLendon R, Northcott PA, Taylor MD, Burger PC, Riggins GJ, Karchin R, Parmigiani G, Bigner DD, Yan H, Papadopoulos N, Vogelstein B, Kinzler KW, Velculescu VE. The genetic landscape of the childhood cancer medulloblastoma. Science. 2011 Jan 28;331(6016):435-9. Epub 2010 Dec 16. PubMed PMID: 21163964; PubMed Central PMCID: PMC3110744.

Cárdenas-Navia LI, Cruz P, Lin JC; NISC Comparative Sequencing Program, Rosenberg SA, Samuels Y. Novel somatic mutations in heterotrimeric G proteins in melanoma. Cancer Biol Ther. 2010 Jul;10(1):33-7. PubMed PMID: 20424519; PubMed Central PMCID: PMC3040832.

Lin JC. Protein microarrays for cancer diagnostics and therapy. Med Princ Pract. 2010;19(4):247-54. Epub 2010 May 26. Review. PubMed PMID: 20516699.

Lin J, Xie Z, Zhu H, Qian J. Understanding protein phosphorylation on a systems level. Brief Funct Genomics. 2010 Jan;9(1):32-42. Epub 2010 Jan 7. Review. PubMed PMID: 20056723; PubMed Central PMCID: PMC3096446.

Link TM, Park U, Vonakis BM, Raben DM, Soloski MJ, Caterina MJ. TRPV2 has a pivotal role in macrophage particle binding and phagocytosis. Nat Immunol. 2010 Mar;11(3):232-9. Epub 2010 Jan 31. PubMed PMID: 20118928; PubMed Central PMCID: PMC2840267.

Liu MM, Tuo J, Chan CC. Gene therapy for ocular diseases. Br J Ophthalmol. 2011 May;95(5):604-12. doi: 10.1136/bjo.2009.174912. Epub 2010 Aug 23. Review. PubMed PMID: 20733027; PubMed Central PMCID: PMC3154727.

Liu MM, Furusato E, Cao X, Shen D, Chan CC. Ocular manifestations and pathology of adult T-cell leukemia/lymphoma associated with human T-lymphotropic  virus type 1. Rare Tumors. 2010 Dec 31;2(4):e63. doi: 10.4081/rt.2010.e63. PubMed PMID: 21234255; PubMed Central PMCID: PMC3019598.

Cao X, Liu M, Tuo J, Shen D, Chan CC. The effects of quercetin in cultured human RPE cells under oxidative stress and in Ccl2/Cx3cr1 double deficient mice. Exp Eye Res. 2010 Jul;91(1):15-25. doi: 10.1016/j.exer.2010.03.016. Epub 2010 Mar 31. PubMed PMID: 20361964; PubMed Central PMCID: PMC2879439.

Long CM*, Muja N*, Bulte JWM (2010) Cell Voyeurism using Magnetic Resonance Imaging. Molecular Imaging: Principles and Practice. BPR Publishers. *co-first author.

Carlos A. Velázquez, Geoffrey M. Lynn, Vineet Kumarb, Larry K. Keefer & Sanjay V. Malhotra*.  Arylation of Sensitive 1-(Pyrrolidin-1-yl)-diazen-1-ium-diolate in Ionic Liquids.  Synthetic Communications: An International Journal for Rapid Communication of Synthetic Organic Chemistry, Volume 40, Issue 9, 2010, pages 1322-1332. DOI:10.1080/00397910903074079.

Gabelli SB, Huang CH, Mandelker D, Schmidt-Kittler O, Vogelstein B, Amzel LM. Structural effects of oncogenic PI3Kα mutations. Curr Top Microbiol Immunol. 2010;347:43-53. Review. PubMed PMID: 20593314.

Mao CP, Hung CF, Kang TH, He L, Tsai YC, Wu CY, Wu TC. Combined administration with DNA encoding vesicular stomatitis virus G protein enhances DNA vaccine potency. J Virol. 2010 Mar;84(5):2331-9. doi: 10.1128/JVI.01954-09. Epub 2009 Dec 16. PubMed PMID: 20015980; PubMed Central PMCID: PMC2820938.

Mao CP, Wu TC. Inhibitory RNA molecules in immunotherapy for cancer. Methods Mol Biol. 2010;623:325-39. PubMed PMID: 20217561; PubMed Central PMCID: PMC2913467.

Chakraborty A, Koldobskiy MA, Bello NT, Maxwell M, Potter JJ, Juluri KR, Maag D, Kim S, Huang AS, Dailey MJ, Saleh M, Snowman AM, Moran TH, Mezey E, Snyder SH. Inositol pyrophosphates inhibit Akt signaling, thereby regulating insulin sensitivity and weight gain. Cell. 2010 Dec 10;143(6):897-910. PubMed PMID:21145457; PubMed Central PMCID: PMC3052691.

Subramaniam S, Mealer RG, Sixt KM, Barrow RK, Usiello A, Snyder SH. Rhes, a physiologic regulator of sumoylation, enhances cross-sumoylation between the basic sumoylation enzymes E1 and Ubc9. J Biol Chem. 2010 Jul 2;285(27):20428-32. Epub 2010 Apr 27. PubMed PMID: 20424159; PubMed Central PMCID: PMC2898300.

Venkatachalam K, Wasserman D, Wang X, Li R, Mills E, Elsaesser R, Li HS,Montell C. Dependence on a retinophilin/myosin complex for stability of PKC and INAD and termination of phototransduction. J Neurosci. 2010 Aug 25;30(34):11337-45. PubMed PMID: 20739554; PubMed Central PMCID: PMC2943201.

Chakraborti D, Rahman MM, Das B, Murrill M, Dey S, Chandra Mukherjee S, Dhar RK, Biswas BK, Chowdhury UK, Roy S, Sorif S, Selim M, Rahman M, Quamruzzaman Q. Status of groundwater arsenic contamination in Bangladesh: a 14-year study report. Water Res. 2010 Nov;44(19):5789-802. doi: 10.1016/j.watres.2010.06.051. Epub 2010 Jun 30. PubMed PMID: 20684969.

Mustafa AK, Ahmad AS, Zeynalov E, Gazi SK, Sikka G, Ehmsen JT, Barrow RK, Coyle JT, Snyder SH, Doré S. Serine racemase deletion protects against cerebral ischemia and excitotoxicity. J Neurosci. 2010 Jan 27;30 (4):1413-6. PubMed PMID: 20107067; PubMed Central PMCID: PMC2841469.

Shim JS, Matsui Y, Bhat S, Nacev BA, Xu J, Bhang HE, Dhara S, Han KC, Chong CR, Pomper MG, So A, Liu JO. Effect of nitroxoline on angiogenesis and growth of human bladder cancer. J Natl Cancer Inst. 2010 Dec 15;102(24):1855-73. Epub 2010 Nov 18. PubMed PMID: 21088277; PubMed Central PMCID: PMC3001967.

Shi W, Nacev BA, Bhat S, Liu JO. Impact of Absolute Stereochemistry on the Antiangiogenic and Antifungal Activities of Itraconazole. ACS Med Chem Lett. 2010;1(4):155-159. PubMed PMID: 21892383; PubMed Central PMCID: PMC3165044.

Xiao Q, Zhang F, Nacev BA, Liu JO, Pei D. Protein N-terminal processing: substrate specificity of Escherichia coli and human methionine aminopeptidases. Biochemistry. 2010 Jul 6;49(26):5588-99. PubMed PMID: 20521764; PubMed Central PMCID: PMC2906754.

Narayan A, Lee AS, Kuo GP, Powe N, Kim HS. Uterine artery embolization versus abdominal myomectomy: a long-term clinical outcome comparison. J Vasc Interv Radiol. 2010 Jul;21(7):1011-7. Epub 2010 May 31. PubMed PMID: 20570178; PubMed Central PMCID: PMC2900435.

Rabi SA, O’Connell KA, Nikolaeva D, Bailey JR, Jilek BL, Shen L, Page KR, Siliciano RF, Blankson JN. Unstimulated primary CD4+ T cells from HIV-1-positive elite suppressors are fully susceptible to HIV-1 entry and productive infection. J Virol. 2011 Jan;85(2):979-86. Epub 2010 Nov 10. PubMed PMID: 21068257; PubMed Central PMCID: PMC3020020.

Jones MB, Chu CH, Pendleton JC, Betenbaugh MJ, Shiloach J, Baljinnyam B, Rubin JS, Shamblott MJ. Proliferation and pluripotency of human embryonic stem cells maintained on type I collagen. Stem Cells Dev. 2010 Dec;19(12):1923-35. Epub 2010 Oct 12. PubMed PMID: 20367282.

Zink MC, Brice AK, Kelly KM, Queen SE, Gama L, Li M, Adams RJ, Bartizal C, Varrone J, Rabi SA, Graham DR, Tarwater PM, Mankowski JL, Clements JE. Simian immunodeficiency virus-infected macaques treated with highly active antiretroviral therapy have reduced central nervous system viral replication and inflammation but persistence of viral DNA. J Infect Dis. 2010 Jul 1;202(1):161-70. PubMed PMID: 20497048; PubMed Central PMCID: PMC2880623.

Rabi SA, O’Connell KA, Nikolaeva D, Bailey JR, Jilek BL, Shen L, Page KR, Siliciano RF, Blankson JN. Unstimulated primary CD4+ T cells from HIV-1-positive elite suppressors are fully susceptible to HIV-1 entry and productive infection. J Virol. 2011 Jan;85(2):979-86. Epub 2010 Nov 10. PubMed PMID: 21068257; PubMed Central PMCID: PMC3020020.

Raghavan S, Desai RA, Kwon Y, Mrksich M, Chen CS. Micropatterned dynamically adhesive substrates for cell migration. Langmuir. 2010 Nov 16;26(22):17733-8. Epub 2010 Oct 1. PubMed PMID: 20886900.

Raghavan S, Shen CJ, Desai RA, Sniadecki NJ, Nelson CM, Chen CS. Decoupling diffusional from dimensional control of signaling in 3D culture reveals a role for myosin in tubulogenesis. J Cell Sci. 2010 Sep 1;123(Pt 17):2877-83. Epub 2010 Aug 3. PubMed PMID: 20682635; PubMed Central PMCID: PMC2923566.

Raghavan S, Nelson CM, Baranski JD, Lim E, Chen CS. Geometrically controlled endothelial tubulogenesis in micropatterned gels. Tissue Eng Part A. 2010 Jul;16(7):2255-63. PubMed PMID: 20180698; PubMed Central PMCID: PMC2947948.

Sampah ME, Ceccato CM, Blankson JN. HIV type 1-mediated downregulation of HLA-B*57/B*5801 proteins on elite suppressor CD4+ T cells. AIDS Res Hum Retroviruses. 2011 Feb;27(2):183-6. doi: 10.1089/aid.2010.0144. Epub 2010 Oct 4. PubMed PMID: 20919920; PubMed Central PMCID: PMC3064525.

Chen X, Scangos KW, Stuphorn V. Supplementary motor area exerts proactive and reactive control of arm movements. J Neurosci. 2010 Nov 3;30(44):14657-75. PubMed PMID: 21048123; PubMed Central PMCID: PMC2990193.

Scangos KW, Stuphorn V. Medial frontal cortex motivates but does not control movement initiation in the countermanding task. J Neurosci. 2010 Feb 3;30(5):1968-82. PubMed PMID: 20130204.

Schreck KC, Taylor P, Marchionni L, Gopalakrishnan V, Bar EE, Gaiano N, Eberhart CG. The Notch target Hes1 directly modulates Gli1 expression and Hedgehog signaling: a potential mechanism of therapeutic resistance. Clin Cancer Res. 2010 Dec 15;16(24):6060-70. PubMed PMID: 21169257; PubMed Central PMCID: PMC3059501.

Silver DL, Watkins-Chow DE, Schreck KC, Pierfelice TJ, Larson DM, Burnetti AJ, Liaw HJ, Myung K, Walsh CA, Gaiano N, Pavan WJ. The exon junction complex component Magoh controls brain size by regulating neural stem cell division. Nat Neurosci. 2010 May;13(5):551-8. Epub 2010 Apr 4. PubMed PMID: 20364144; PubMed Central PMCID: PMC2860667.

Schroeder JL, Luger-Hamer M, Pursley R, Pohida T, Chefd’hotel C, Kellman P, Balaban RS. Short communication: Subcellular motion compensation for minimally invasive microscopy, in vivo: evidence for oxygen gradients in resting muscle. Circ Res. 2010 106:1129-33. PMID20167928; PMC3209509.

Nguyen-Ngoc KV, Cheung KJ, Brenot A, Shamir ER, Gray RS, Hines WC, Yaswen P, Werb Z, Ewald AJ. ECM microenvironment regulates collective migration and local dissemination in normal and malignant mammary epithelium. Proc Natl Acad Sci U S A. 2012 Sep 25;109(39):E2595-604. Epub 2012 Aug 23. PubMed PMID: 22923691; PubMed Central PMCID: PMC3465416.

Shamir ER, Warthan M, Brown SP, Nataro JP, Guerrant RL, Hoffman PS. Nitazoxanide inhibits biofilm production and hemagglutination by enteroaggregative Escherichia coli strains by blocking assembly of AafA fimbriae. Antimicrob Agents Chemother. 2010 Apr;54(4):1526-33. doi: 10.1128/AAC.01279-09. Epub 2010 Jan 19. PubMed PMID: 20086145; PubMed Central PMCID: PMC2849362.

Camp M, Chang DC, Zhang Y, Arnold M, Sharpe L, Gabre-Kidan A, Bathurst MA, Abdullah F. Provider density and health system facility factors and their relationship to rates of pediatric perforated appendicitis in US counties. Arch Surg. 2010 Dec;145(12):1139-44. doi: 10.1001/archsurg.2010.271. PubMed PMID: 21173286.

Mayer-Barber KD, Barber DL, Shenderov K, White SD, Wilson MS, Cheever A,Kugler D, Hieny S, Caspar P, Núñez G, Schlueter D, Flavell RA, Sutterwala FS, Sher A. Caspase-1 independent IL-1beta production is critical for host resistance to mycobacterium tuberculosis and does not require TLR signaling in vivo. J Immunol. 2010 Apr 1;184(7):3326-30. doi: 10.4049/jimmunol.0904189. Epub 2010 Mar 3. PubMed PMID: 20200276; PubMed Central PMCID: PMC3420351.

Wilson MS, Ramalingam TR, Rivollier A, Shenderov K, Mentink-Kane MM, Madala SK, Cheever AW, Artis D, Kelsall BL, Wynn TA. Colitis and intestinal inflammation in IL10-/- mice results from IL-13Rα2-mediated attenuation of IL-13 activity. Gastroenterology. 2011 Jan;140(1):254-64. doi: 10.1053/j.gastro.2010.09.047. Epub 2010 Oct 14. PubMed PMID: 20951137; PubMed Central PMCID: PMC3006653.

Werner JK Jr, Speed T, Bhandari R. Protein pyrophosphorylation by diphosphoinositol pentakisphosphate (InsP7). Methods Mol Biol. 2010;645:87-102. PubMed PMID: 20645183.

Bhise NS, Gray RS, Sunshine JC, Htet S, Ewald AJ, Green JJ. The relationship between terminal functionalization and molecular weight of a gene deliverypolymer and transfection efficacy in mammary epithelial 2-D cultures and 3-D organotypic cultures. Biomaterials. 2010 Nov;31(31):8088-96. Epub 2010 Jul 31. PubMed PMID: 20674001.

Tadross MR, Yue DT. Systematic mapping of the state dependence of voltage- and Ca2+-dependent inactivation using simple open-channel measurements. J Gen Physiol. 2010 Mar;135(3):217-27. Epub 2010 Feb 8. PubMed PMID: 20142518; PubMed Central PMCID: PMC2828911.

Tadross MR, Ben Johny M, Yue DT. Molecular endpoints of Ca2+/calmodulin- and voltage-dependent inactivation of Ca(v)1.3 channels. J Gen Physiol. 2010 Mar;135(3):197-215. Epub 2010 Feb 8. PubMed PMID: 20142517; PubMed Central PMCID: PMC2828906.

Bellows ML, Taylor MS, Cole PA, Shen L, Siliciano RF, Fung HK, Floudas CA. Discovery of entry inhibitors for HIV-1 via a new de novo protein design framework. Biophys J. 2010 Nov 17;99(10):3445-53. PubMed PMID: 21081094; PubMed Central PMCID: PMC2980751.

Barnett BP, Hwang Y, Taylor MS, Kirchner H, Pfluger PT, Bernard V, Lin YY, Bowers EM, Mukherjee C, Song WJ, Longo PA, Leahy DJ, Hussain MA, Tschöp MH, Boeke JD, Cole PA. Glucose and weight control in mice with a designed ghrelin O-acyltransferase inhibitor. Science. 2010 Dec 17;330(6011):1689-92. Epub 2010 Nov 18. PubMed PMID: 21097901; PubMed Central PMCID: PMC3068526.

Bellows ML, Fung HK, Taylor MS, Floudas CA, López de Victoria A, Morikis D. New compstatin variants through two de novo protein design frameworks. Biophys J. 2010 May 19;98(10):2337-46. PubMed PMID: 20483343; PubMed Central PMCID: PMC2872270.

Vandiver MS, Bridges EP, Koon RL, Kinnaird AN, Glaeser JW, Campbell JF, Priedemann CJ, Rosenblatt WT, Herbert BJ, Wheeler SK, Wheeler JF, Kane-Maguire NA. Effect of ancillary ligands on the DNA interaction of [Cr(diimine)3]3+ complexes containing the intercalating dipyridophenazine ligand. Inorg Chem. 2010 Feb 1;49(3):839-48. doi: 10.1021/ic9013619. PubMed PMID: 20039692.

Koldobskiy MA, Chakraborty A, Werner JK Jr, Snowman AM, Juluri KR, Vandiver MS, Kim S, Heletz S, Snyder SH. p53-mediated apoptosis requires inositol hexakisphosphate kinase-2. Proc Natl Acad Sci U S A. 2010 Dec 7;107(49):20947-51. Epub 2010 Nov 15. PubMed PMID: 21078964; PubMed Central PMCID: PMC3000257.

Lauring J, Cosgrove DP, Fontana S, Gustin JP, Konishi H, Abukhdeir AM, Garay JP, Mohseni M, Wang GM, Higgins MJ, Gorkin D, Reis M, Vogelstein B, Polyak K, Cowherd M, Buckhaults PJ, Park BH. Knock in of the AKT1 E17K mutation in human breast epithelial cells does not recapitulate oncogenic PIK3CA mutations. Oncogene. 2010 Apr 22;29(16):2337-45. Epub 2010 Jan 25. PubMed PMID: 20101210; PubMed Central PMCID: PMC3042798.

Wang GM and Park BH. The Role of PIK3CA Mutations as a Predictor of Outcomes and a Therapeutic Target. Current Breast Cancer Reports, 2(4):167-173, 2010. DOI: 10.1007/s12609-010-0022-4.

Le DT, Ladle BH, Lee T, Weiss V, Yao X, Leubner A, Armstrong TD, Jaffee EM. CD8(+) Foxp3(+) tumor infiltrating lymphocytes accumulate in the context of an effective anti-tumor response. Int J Cancer. 2011 Aug 1;129(3):636-47. doi: 10.1002/ijc.25693. Epub 2010 Nov 12. PubMed PMID: 20857491; PubMed Central PMCID: PMC3064958.

Koldobskiy MA, Chakraborty A, Werner JK Jr, Snowman AM, Juluri KR, Vandiver MS, Kim S, Heletz S, Snyder SH. p53-mediated apoptosis requires inositol hexakisphosphate kinase-2. Proc Natl Acad Sci U S A. 2010 Dec 7;107(49):20947-51. Epub 2010 Nov 15. PubMed PMID: 21078964; PubMed Central PMCID: PMC3000257.

Werner JK Jr, Speed T, Bhandari R. Protein pyrophosphorylation by diphosphoinositol pentakisphosphate (InsP7). Methods Mol Biol. 2010;645:87-102. PubMed PMID: 20645183.

Guo T, Mandai K, Condie BG, Wickramasinghe SR, Capecchi MR, Ginty DD. An evolving NGF-Hoxd1 signaling pathway mediates development of divergent neural circuits in vertebrates. Nat Neurosci. 2011 Jan;14(1):31-6. Epub 2010 Dec 12. PubMed PMID: 21151121.

Xu R, Sciubba DM, Gokaslan ZL, Bydon A. Metastasis to the occipitocervical junction: A case report and review of the literature. Surg Neurol Int. 2010 May 31;1:16. PubMed PMID: 20657697; PubMed Central PMCID: PMC2908354.

Parker SL, Xu R, McGirt MJ, Witham TF, Long DM, Bydon A. Long-term back pain after a single-level discectomy for radiculopathy: incidence and health care cost analysis. J Neurosurg Spine. 2010 Feb;12(2):178-82.PubMed PMID: 20121353.

Bydon A, Xu R, Parker SL, McGirt MJ, Bydon M, Gokaslan ZL, Witham TF. Recurrent back and leg pain and cyst reformation after surgical resection of spinal synovial cysts: systematic review of reported postoperative outcomes. Spine J. 2010 Sep;10(9):820-6. Epub 2010 May 20. Review. PubMed PMID: 20488765.

Xu R, McGirt MJ, Parker SL, Bydon M, Olivi A, Wolinsky JP, Witham TF, Gokaslan ZL, Bydon A. Factors associated with recurrent back pain and cyst recurrence after surgical resection of one hundred ninety-five spinal synovial cysts: analysis of one hundred sixty-seven consecutive cases. Spine (Phila Pa 1976). 2010 May 1;35(10):1044-53. PubMed PMID: 20173680.

Bydon A, Xu R, Conte JV, Gokaslan ZL, Brinker JA, Witham TF, Yassari R. Surgical mystery: where is the missing pituitary rongeur tip? Spine (Phila Pa 1976). 2010 Aug 1;35(17):E867-72. PubMed PMID: 20628330.

Lotfy M, Xu R, McGirt M, Sakr S, Ayoub B, Bydon A. Reconstruction of skull base defects in sphenoid wing dysplasia associated with neurofibromatosis I with titanium mesh. Clin Neurol Neurosurg. 2010 Dec;112(10):909-14. Epub 2010 Aug 11. PubMed PMID: 20702031.

Xu R, McGirt MJ, Sutter EG, Sciubba DM, Wolinsky JP, Witham TF, Gokaslan ZL, Bydon A. Biomechanical comparison between C-7 lateral mass and pedicle screws in subaxial cervical constructs. Presented at the 2009 Joint Spine Meeting. Laboratory investigation. J Neurosurg Spine. 2010 Dec;13(6):688-94. PubMed PMID: 21121745.

2009 (MD-PhD student bolded/italics)

Gamper CJ, Agoston AT, Nelson WG, Powell JD. Identification of DNA methyltransferase 3a as a T cell receptor-induced regulator of Th1 and Th2 differentiation. J Immunol. 2009 Aug 15;183 (4):2267-76. Epub 2009 Jul 22. PubMed PMID: 19625655; PubMed Central PMCID: PMC2818975.

Bailey JR, Brennan TP, O’Connell KA, Siliciano RF, Blankson JN. Evidence of CD8+ T-cell-mediated selective pressure on human immunodeficiency virus type 1 nef in HLA-B*57+ elite suppressors. J Virol. 2009 Jan;83(1):88-97. Epub 2008 Oct 22. PubMed PMID: 18945771; PubMed Central PMCID: PMC2612327.

O’Connell KA, Bailey JR, Blankson JN. Elucidating the elite: mechanisms of control in HIV-1 infection. Trends Pharmacol Sci. 2009 Dec;30(12):631-7. Review. PubMed PMID: 19837464.

Lassen KG, Lobritz MA, Bailey JR, Johnston S, Nguyen S, Lee B, Chou T, Siliciano RF, Markowitz M, Arts EJ. Elite suppressor-derived HIV-1 envelope glycoproteins exhibit reduced entry efficiency and kinetics. PLoS Pathog. 2009 Apr;5(4):e1000377. Epub 2009 Apr 10. PubMed PMID: 19360131; PubMed Central PMCID:PMC2661022.

Barnett BP, Sheth S, Ali SZ. Cytopathologic analysis of paratracheal masses: a study of 737 cases with clinicoradiologic correlation. Acta Cytol. 2009 Nov-Dec;53(6):672-8. PubMed PMID: 20014557.

Barnett BP, Hughes AH, Lin S, Arepally A, Gailloud PH. In vitro assessment of EmboGel and UltraGel radiopaque hydrogels for the endovascular treatment of aneurysms. J Vasc Interv Radiol. 2009 Apr;20(4):507 -12. PubMed PMID: 19328428.

Barnett BP, Qazi U, Perler BA, Malas MB. Novel approach to a type I endoleak following a hybrid repair of an arch aortic aneurysm. Vasc Endovascular Surg. 2009 Aug-Sep;43(4):389-92. Epub 2009 Jul 23. PubMed PMID: 19628521.

Leong TG, Randall CL, Benson BR, Bassik N, Stern GM, Gracias DH. Tetherless thermobiochemically actuated microgrippers. Proc Natl Acad Sci U S A. 2009 Jan 20;106(3):703-8. Epub 2009 Jan 12. PubMed PMID: 19139411; PubMed Central PMCID: PMC2630075.

Bassik N, Stern GM, Gracias DH. Microassembly based on hands free origami with bidirectional curvature. Appl Phys Lett. 2009 Aug 31;95(9):91901. PubMed PMID: 19787072; PubMed Central PMCID: PMC2752473.

Tyagi, P.,  Bassik, N.,  Leong, T.G.,  Jeong-Hyun Cho, Benson, B.R.,  Gracias, D.H. , Self-Assembly Based on Chromium/Copper Bilayers.   IEEE/ASME Journal of Microelectromechancial Systems (JMEMS) 2009 Vol. 18; Issue 4; 784-791. (10.1109/JMEMS.2009.2023841)

Burger IM, Kass NE. Screening in the dark: ethical considerations of providing screening tests to individuals when evidence is insufficient to support screening populations. Am J Bioeth. 2009 Apr;9(4):3-14 PubMed PMID: 19326299; PubMed Central PMCID: PMC3115566.

Burger IM, Kass NE. Response to open peer commentaries for “Ethical considerations of providing screening tests to individuals when evidence is insufficient to support screening populations”. Am J Bioeth. 2009 Apr;9(4):W1-2. PubMed PMID: 19326298.

Elmouelhi N, Aich U, Paruchuri VD, Meledeo MA, Campbell CT, Wang JJ, Srinivas R, Khanna HS, Yarema KJ. Hexosamine template. A platform for modulating gene expression and for sugar-based drug discovery. J Med Chem. 2009 Apr 23;52(8):2515-30. PubMed PMID: 19326913; PubMed Central PMCID: PMC2721157.

Cheong R, Wang CJ, Levchenko A. Using a microfluidic device for high-content analysis of cell signaling. Sci Signal. 2009 Jun 16;2(75):pl2. Review. PubMed PMID: 19531802.

Kim DH, Lipke EA, Kim P, Cheong R, Thompson S, Delannoy M, Suh KY, Tung L,Levchenko A. Nanoscale cues regulate the structure and function of macroscopic cardiac tissue constructs. Proc Natl Acad Sci U S A. 2010 Jan 12;107(2):565-70. Epub 2009 Dec 16. PubMed PMID: 20018748; PubMed Central PMCID: PMC2818944.

Kota J, Chivukula RR, O’Donnell KA, Wentzel EA, Montgomery CL, Hwang HW, Chang TC, Vivekanandan P, Torbenson M, Clark KR, Mendell JR, Mendell JT. Therapeutic microRNA delivery suppresses tumorigenesis in a murine liver cancer model. Cell. 2009 Jun 12;137(6):1005-17. PubMed PMID: 19524505.

Chivukula RR, Mendell JT. Abate and switch: miR-145 in stem cell differentiation. Cell. 2009 May 15;137(4):606-8. PubMed PMID: 19450510.

Chang TC, Zeitels LR, Hwang HW, Chivukula RR, Wentzel EA, Dews M, Jung J, Gao P, Dang CV, Beer MA, Thomas-Tikhonenko A, Mendell JT. Lin-28B transactivation is necessary for Myc-mediated let-7 repression and proliferation. Proc Natl Acad Sci U S A. 2009 Mar 3;106(9):3384-9. Epub 2009 Feb 11. PubMed PMID: 19211792; PubMed  Central PMCID: PMC2651245.

Shim JS, Matsui Y, Bhat S, Nacev BA, Xu J, Bhang HE, Dhara S, Han KC, Chong CR, Pomper MG, So A, Liu JO. Effect of nitroxoline on angiogenesis and growth of   human bladder cancer. J Natl Cancer Inst. 2010 Dec 15;102(24):1855-73. doi: 10.1093/jnci/djq457. Epub 2010 Nov 18. Erratum in: J Natl Cancer Inst. 2011 Jul 6;103(13):1070. PubMed PMID: 21088277; PubMed Central PMCID: PMC3001967.

 

Christman AL, Vannorsdall TD, Pearlson GD, Hill-Briggs F, Schretlen DJ. Cranial volume, mild cognitive deficits, and functional limitations associated with diabetes in a community sample. Arch Clin Neuropsychol. 2010 Feb;25(1):49-59. Epub 2009 Nov 25. PubMed PMID: 19942595; PubMed Central PMCID: PMC2809552.

Nachega JB, Hislop M, Nguyen H, Dowdy DW, Chaisson RE, Regensberg L, Cotton M, Maartens G. Antiretroviral therapy adherence, virologic and immunologic outcomes in adolescents compared with adults in southern Africa. J Acquir Immune Defic Syndr. 2009 May 1;51(1):65-71. PubMed PMID: 19282780; PubMed Central PMCID: PMC2674125.

Dowdy DW, Chaisson RE. The persistence of tuberculosis in the age of DOTS: reassessing the effect of case detection. Bull World Health Organ. 2009 Apr;87(4):296-304. PubMed PMID: 19551238; PubMed Central PMCID: PMC2672581.

Basu AC, Tsai GE, Ma CL, Ehmsen JT, Mustafa AK, Han L, Jiang ZI, Benneyworth MA, Froimowitz MP, Lange N, Snyder SH, Bergeron R, Coyle JT. Targeted disruption of serine racemase affects glutamatergic neurotransmission and behavior. Mol Psychiatry. 2009 Jul;14(7):719-27. Epub 2008 Dec 9. Erratum in: Mol Psychiatry. 2010 Nov;15(11):1122. PubMed PMID: 19065142; PubMed Central PMCID: PMC2786989.

Sen N, Hara MR, Ahmad AS, Cascio MB, Kamiya A, Ehmsen JT, Aggrawal N, Hester L, Doré S, Snyder SH, Sawa A. GOSPEL: A Neuroprotective Protein that Binds to GAPDH upon S-Nitrosylation. Neuron 63(1): 81-91 (2009), PMID:19607794.

Mustafa AK, van Rossum DB, Patterson RL, Maag D, Ehmsen JT, Gazi SK, Chakraborty A, Barrow RK, Amzel LM, Snyder SH. Glutamatergic regulation of serine racemase via reversal of PIP2 inhibition. Proc Natl Acad Sci USA 106(8): 2921-6 (2009), PMID:19193859.

Mustafa AK, Gadalla MM, Sen N, Kim S, Mu W, Gazi SK, Barrow RK, Yang G, Wang R, Snyder SH. H2S signals through protein S-sulfhydration. Sci Signal. 2009 Nov 10;2(96):ra72. PubMed PMID: 19903941; PubMed Central PMCID: PMC2998899.

Mustafa AK, Gadalla MM, Snyder SH. Signaling by gasotransmitters. Sci Signal. 2009 Apr 28;2(68):re2. Review. PubMed PMID: 19401594; PubMed Central PMCID: PMC2744355.

Frazier JL, Goodwin CR, Ahn ES, Jallo GI. A review on the management of epilepsy associated with hypothalamic hamartomas. Childs Nerv Syst. 2009 Apr;25(4):423-32. Epub 2009 Jan 20. Review. PubMed PMID: 19153751.

Lal B, Goodwin CR, Sang Y, Foss CA, Cornet K, Muzamil S, Pomper MG, Kim J, Laterra J. EGFRvIII and c-Met pathway inhibitors synergize against PTEN-null/EGFRvIII+ glioblastoma xenografts. Mol Cancer Ther. 2009 Jul;8(7):1751-60. Epub 2009 Jul 7. PubMed PMID: 19584231; PubMed Central PMCID: PMC2846399.

Li Y, Goodwin CR, Rosen EM, Laterra J, Xia S. Camptothecin and Fas receptor agonists synergistically induce medulloblastoma cell death: ROS-dependent mechanisms. Anticancer Drugs. (2009) Oct;20(9):770-78, PMID:19633536.

Nathan H, Choti M, Wolfgang CL, Goodwin CR, Seth AK, Winter JM, Barish EH, Schulick RD, Pawlik TM, Cameron JL. (2009) Risk Factors for Pancreatic Leak Following Distal ancreatectomy. Annals of Surgery (2009) Aug;250 (2):277-81, PMID:19638926.

Yen HR, Harris TJ, Wada S, Grosso JF, Getnet D, Goldberg MV, Liang KL, Bruno TC, Pyle KJ, Chan SL, Anders RA, Trimble CL, Adler AJ, Lin TY, Pardoll DM, Huang CT, Drake CG. Tc17 CD8 T cells: functional plasticity and subset diversity. J Immunol. 2009 Dec 1;183(11):7161-8. Epub 2009 Nov 16. PubMed PMID: 19917680; PubMed Central PMCID: PMC3082359.

Wada S, Yoshimura K, Hipkiss EL, Harris TJ, Yen HR, Goldberg MV, Grosso JF, Getnet D, Demarzo AM, Netto GJ, Anders R, Pardoll DM, Drake CG. Cyclophosphamide augments antitumor immunity: studies in an autochthonous prostate cancer model. Cancer Res. 2009 May 15;69(10):4309-18. Epub 2009 May 12. PubMed PMID: 19435909; PubMed Central PMCID: PMC3084614.

Getnet D, Maris CH, Hipkiss EL, Grosso JF, Harris TJ, Yen HR, Bruno TC, Wada S, Adler A, Georgantas RW, Jie C, Goldberg MV, Pardoll DM, Drake CG. Tumor recognition and self-recognition induce distinct transcriptional profiles in antigen-specific CD4 T cells. J Immunol. 2009 Apr 15;182(8):4675-85. PubMed PMID: 19342643; PubMed Central PMCID: PMC3082355.

Healy ZR, Dinkova-Kostova AT, Wehage SL, Thompson RE, Fahey JW, Talalay P. Precise determination of the erythema response of human skin to ultraviolet radiation and quantification of effects of protectors. Photodermatol Photoimmunol Photomed. 2009 Feb;25(1):45-50. PubMed PMID: 19152516.

Howard DL, Strobino D, Sherman SG, Crum RM. Timing of incarceration during pregnancy and birth outcomes: exploring racial differences. Matern Child Health J. 2009 Jul;13(4):457-66. Epub 2008 Jun 17. PubMed PMID: 18561009.

Johnson TV, Bull ND, Hunt DP, Marina N, Tomarev SI, Martin KR. Neuroprotective effects of intravitreal mesenchymal stem cell transplantation in experimental glaucoma. Invest Ophthalmol Vis Sci. 2010 Apr;51(4):2051-9. doi: 10.1167/iovs.09-4509. Epub 2009 Nov 20. PubMed PMID: 19933193; PubMed Central PMCID: PMC2868400.

Johnson TV, Tomarev SI. Rodent models of glaucoma. Brain Res Bull. 2010 Feb 15;81(2-3):349-58. doi: 10.1016/j.brainresbull.2009.04.004. Epub 2009 Apr 18. Review. PubMed PMID: 19379796; PubMed Central PMCID: PMC2830899.

Parmigiani G, Boca S, Lin J, Kinzler KW, Velculescu V, Vogelstein B. Design and analysis issues in genome-wide somatic mutation studies of cancer. Genomics. 2009 Jan;93(1):17-21. Epub 2008 Aug 23. Review. PubMed PMID: 18692126; PubMed Central PMCID: PMC2820387.

Prickett TD, Agrawal NS, Wei X, Yates KE, Lin JC, Wunderlich JR, Cronin JC, Cruz P, Rosenberg SA, Samuels Y. Analysis of the tyrosine kinome in melanoma reveals recurrent mutations in ERBB4. Nat Genet. 2009 Oct;41(10):1127-32. Epub 2009 Aug 30. PubMed PMID: 19718025; PubMed Central PMCID: PMC2897709.

Hu S, Xie Z, Onishi A, Yu X, Jiang L, Lin J, Rho HS, Woodard C, Wang H, Jeong JS, Long S, He X, Wade H, Blackshaw S, Qian J, Zhu H. Profiling the human protein-DNA interactome reveals ERK2 as a transcriptional repressor of interferon signaling. Cell. 2009 Oct 30;139(3):610-22. PubMed PMID: 19879846; PubMed Central PMCID: PMC2774939.

Blackford A, Serrano OK, Wolfgang CL, Parmigiani G, Jones S, Zhang X, Parsons DW, Lin JC, Leary RJ, Eshleman JR, Goggins M, Jaffee EM, Iacobuzio-Donahue CA,Maitra A, Cameron JL, Olino K, Schulick R, Winter J, Herman JM, Laheru D, Klein AP, Vogelstein B, Kinzler KW, Velculescu VE, Hruban RH. SMAD4 gene mutations are associated with poor prognosis in pancreatic cancer. Clin Cancer Res. 2009 Jul 15;15(14):4674-9. Epub 2009 Jul 7. PubMed PMID: 19584151; PubMed Central PMCID: PMC2819274.

Wan J, Lin J, Zack DJ, Qian J. Relating periodicity of nucleosome organization and gene regulation. Bioinformatics. 2009 Jul 15;25(14):1782-8. Epub 2009 May 15. PubMed PMID: 19447785; PubMed Central PMCID: PMC2705233.

Duncan CG, Leary RJ, Lin JC, Cummins J, Di C, Schaefer CF, Wang TL, Riggins GJ, Edwards J, Bigner D, Kopelovich L, Vogelstein B, Kinzler KW, Velculescu VE, Yan H. Identification of microbial DNA in human cancer. BMC Med Genomics. 2009 May 8;2:22. PubMed PMID: 19426505; PubMed Central PMCID: PMC2685141.

Cronin JC, Wunderlich J, Loftus SK, Prickett TD, Wei X, Ridd K, Vemula S, Burrell AS, Agrawal NS, Lin JC, Banister CE, Buckhaults P, Rosenberg SA, Bastian BC, Pavan WJ, Samuels Y. Frequent mutations in the MITF pathway in melanoma. Pigment Cell Melanoma Res. 2009 Aug;22(4):435-44. Epub 2009 Apr 29. PubMed PMID: 19422606; PubMed Central PMCID: PMC2728363.

Palavalli LH, Prickett TD, Wunderlich JR, Wei X, Burrell AS, Porter-Gill P, Davis S, Wang C, Cronin JC, Agrawal NS, Lin JC, Westbroek W, Hoogstraten-Miller S, Molinolo AA, Fetsch P, Filie AC, O’Connell MP, Banister CE, Howard JD, Buckhaults P, Weeraratna AT, Brody LC, Rosenberg SA, Samuels Y. Analysis of the matrix metalloproteinase family reveals that MMP8 is often mutated in melanoma. Nat Genet. 2009 May;41 (5):518-20. Epub 2009 Mar 29. PubMed PMID: 19330028; PubMed Central PMCID: PMC2748394.

Blackford A, Parmigiani G, Kensler TW, Wolfgang C, Jones S, Zhang X, Parsons DW, Lin JC, Leary RJ, Eshleman JR, Goggins M, Jaffee EM, Iacobuzio-Donahue CA, Maitra A, Klein A, Cameron JL, Olino K, Schulick R, Winter J, Vogelstein B, Velculescu VE, Kinzler KW, Hruban RH. Genetic mutations associated with cigarette smoking in pancreatic cancer. Cancer Res. 2009 Apr 15;69(8):3681-8. Epub 2009 Apr 7. PubMed PMID: 19351817; PubMed Central PMCID: PMC2669837.

Jones S, Hruban RH, Kamiyama M, Borges M, Zhang X, Parsons DW, Lin JC, Palmisano E, Brune K, Jaffee EM, Iacobuzio-Donahue CA, Maitra A, Parmigiani G, Kern SE, Velculescu VE, Kinzler KW, Vogelstein B, Eshleman JR, Goggins M, Klein AP. Exomic sequencing identifies PALB2 as a pancreatic cancer susceptibility gene. Science. 2009 Apr 10;324(5924):217. Epub 2009 Mar 5. PubMed PMID: 19264984; PubMed Central PMCID: PMC2684332.

Long CM, Bulte JW. In vivo tracking of cellular therapeutics using magnetic resonance imaging. Expert Opin Biol Ther. 2009 Mar;9(3):293-306. Review. PubMed PMID: 19216619; PubMed Central PMCID: PMC3079243.

Long CM, van Laarhoven HW, Bulte JW, Levitsky HI. Magnetovaccination as a novel method to assess and quantify dendritic cell tumor antigen capture and delivery to lymph nodes. Cancer Res. 2009 Apr 1;69 (7):3180-7. Epub 2009 Mar 10. PubMed PMID: 19276358; PubMed Central PMCID: PMC3031988.

Gabelli SB, Mandelker D, Schmidt-Kittler O, Vogelstein B, Amzel LM. Somatic mutations in PI3Kalpha: structural basis for enzyme activation and drug design. Biochim Biophys Acta. 2010 Mar;1804(3):533-40. Epub 2009 Dec 2. Review. PubMed PMID: 19962457; PubMed Central PMCID: PMC2821964.

Mandelker D, Gabelli SB, Schmidt-Kittler O, Zhu J, Cheong I, Huang CH, Kinzler KW, Vogelstein B, Amzel LM. A frequent kinase domain mutation that changes the interaction between PI3Kalpha and the membrane. Proc Natl Acad Sci U S A. 2009 Oct 6;106(40):16996-7001. Epub 2009 Sep 23. PubMed PMID: 19805105; PubMed Central PMCID: PMC2761334.

Reti IM, Han S, Miskimon M, Rosen JB, Baraban JM. Nicotine and Delta(9)-tetrahydrocannabinol withdrawal induce Narp in the central nucleus of the amygdala. Synapse. 2009 Mar;63(3):252-5. PubMed PMID: 19084905; PubMed Central PMCID: PMC2628419.

Irizarry RA, Ladd-Acosta C, Wen B, Wu Z, Montano C, Onyango P, Cui H, Gabo K, Rongione M, Webster M, Ji H, Potash JB, Sabunciyan S, Feinberg AP. The human colon cancer methylome shows similar hypo- and hypermethylation at conserved tissue-specific CpG island shores. Nat Genet. 2009 Feb;41(2):178-86. Epub 2009 Jan 18. PubMed PMID: 19151715; PubMed Central PMCID: PMC2729128.

Wang Z, Udeshi ND, O’Malley M, Shabanowitz J, Hunt DF, Hart GW. Enrichment and site mapping of O-linked N-acetylglucosamine by a combination of chemical/enzymatic tagging, photochemical cleavage, and electron transfer dissociation mass spectrometry. Mol Cell Proteomics. 2010 Jan;9(1):153-60. Epub 2009 Aug 19. PubMed PMID: 19692427; PubMed Central PMCID: PMC2808261.

Basu AC, Tsai GE, Ma CL, Ehmsen JT, Mustafa AK, Han L, Jiang ZI, Benneyworth MA, Froimowitz MP, Lange N, Snyder SH, Bergeron R, Coyle JT. Targeted disruption of serine racemase affects glutamatergic neurotransmission and behavior. Mol Psychiatry. 2009 Jul;14(7):719-27. Epub 2008 Dec 9. Erratum in: Mol Psychiatry.2010 Nov;15(11):1122. PubMed PMID: 19065142; PubMed Central PMCID: PMC2786989.

Mustafa AK, Gadalla MM, Snyder SH. Signaling by gasotransmitters. Sci Signal. 2009 Apr 28;2(68):re2. Review. PubMed PMID: 19401594; PubMed Central PMCID: PMC2744355.

Mustafa AK, Gadalla MM, Sen N, Kim S, Mu W, Gazi SK, Barrow RK, Yang G, Wang R, Snyder SH. H2S signals through protein S-sulfhydration. Sci Signal. 2009 Nov 10;2(96):ra72. PubMed PMID: 19903941; PubMed Central PMCID: PMC2998899.

Mustafa, AK, van Rossum, D.B., Patterson, R.L., Maag, D., Ehmsen, J.T., Gazi, S.K., Chakraborty, A., Barrow, R.K., Amzel, L.M. and Snyder, S.H., Glutamatergic Regulation of Serine Racemase via Reversal of PIP2 Inhibition, Proc. Natl. Acad. Sci. USA, 2009, 106(8), pp.2921-2926. PMID: 19193859

Liu, JO, Nacev, BA, Xu, J, and Bhat, S. 2009. It takes two binding sites for calcineurin and NFAT to tango. Mol. Cell 33:676-678. PMID:19328062.

Armanios M, Alder JK, Parry EM, Karim B, Strong MA, Greider CW. Short telomeres are sufficient to cause the degenerative defects associated with aging. Am J Hum Genet. 2009 Dec;85(6):823-32. Epub . PubMed PMID: 19944403; PubMed Central PMCID: PMC2790562.

Pletneva M, Fan H, Park JJ, Radojcic V, Jie C, Yu Y, Chan C, Redwood A, Pardoll D, Housseau F. IFN-producing killer dendritic cells are antigen-presenting cells endowed with t-cell crosspriming capacity. Cancer Res. 2009 Aug 15;69(16):6607-14. PMID: 19679552

Radojcic V, Bezak KB, Skarica M, Pletneva MA, Yoshimura K, Schulick RD, Luznik L. Cyclophosphamide resets dendritic cell homeostasis and enhances antitumor immunity through effects that extend beyond regulatory T cell elimination. Cancer Immunol Immunother. 2009 Jul 10. [Epub ahead of print] PMID: 19590872

Dinoso JB, Rabi SA, Blankson JN, Gama L, Mankowski JL, Siliciano RF, Zink MC, Clements JE. A simian immunodeficiency virus-infected macaque model to study viral reservoirs that persist during highly active antiretroviral therapy. J Virol. 2009 Sep;83(18):9247-57. Epub 2009 Jul 1. PubMed PMID: 19570871; PubMed Central PMCID: PMC2738256.

Shen L, Rabi SA, Siliciano RF. A novel method for determining the inhibitory potential of anti-HIV drugs. Trends Pharmacol Sci. 2009 Dec;30(12):610-6. Review. PubMed PMID: 19837466.

Desai RA, Gao L, Raghavan S, Liu WF, Chen CS. Cell polarity triggered by cell-cell adhesion via Ecadherin. J. Cell Science 2009 Apr 1; 122(7):905-11, PMID:19258396.

Yun J, Rago C, Cheong I, Pagliarini R, Angenendt P, Rajagopalan H, Schmidt K, Willson JK, Markowitz S, Zhou S, Diaz LA Jr, Velculescu VE, Lengauer C, Kinzler KW, Vogelstein B, Papadopoulos N. Glucose deprivation contributes to the development of KRAS pathway mutations in tumor cells. Science. 2009 Sep 18;325(5947):1555-9. Epub 2009 Aug 6. PubMed PMID: 19661383; PubMed Central PMCID: PMC2820374.

Yan Y, Sabharwal P, Rao M, Sockanathan S. The antioxidant enzyme Prdx1 controls neuronal differentiation by thiol-redox-dependent activation of GDE2. Cell. 2009 Sep 18;138(6):1209-21. PubMed PMID: 19766572; PubMed Central PMCID: PMC2748999.

Schreck KC, Gaiano N. PML: a tumor suppressor essential for neocortical development. Nat Neurosci. 2009 Feb;12(2):108-10. Review. PubMed PMID: 19172164.

Brennan TP, Woods JO, Sedaghat AR, Siliciano JD, Siliciano RF, Wilke CO. Analysis of human immunodeficiency virus type 1 viremia and provirus in resting CD4+ T cells reveals a novel source of residual viremia in patients on antiretroviral therapy. J Virol. 2009 Sep;83(17):8470-81. Epub 2009 Jun 17. PubMed PMID: 19535437; PubMed Central PMCID: PMC2738142.

Sedaghat AR, Rastegar DA, O’Connell KA, Dinoso JB, Wilke CO, Blankson JN. T cell dynamics and the response to HAART in a cohort of HIV-1-infected elite suppressors. Clin Infect Dis. 2009 Dec 1;49(11):1763-6. PubMed PMID: 19857162; PubMed Central PMCID: PMC2783537.

Sedaghat AR, Siliciano RF, Wilke CO. Constraints on the dominant mechanism for HIV viral dynamics in patients on raltegravir. Antivir Ther. 2009;14(2):263-71. PubMed PMID: 19430101; PubMed Central PMCID: PMC2980788.

Sedaghat AR, Zhang Z, Begum S, Palermo R, Best S, Ulmer KM, Levine M, Zinreich E, Messing BP, Gold D, Wu AA, Niparko KJ, Kowalski J, Hirata RM, Saunders JR, Westra WH, Pai SI. Prognostic significance of human papillomavirus in oropharyngeal squamous cell carcinomas. Laryngoscope. 2009 Aug;119(8):1542-9. doi: 10.1002/lary.20533. PubMed PMID: 19522004.

Nalayanda DD, Puleo C, Fulton WB, Sharpe LM, Wang TH, Abdullah F. An open-access microfluidic model for lung-specific functional studies at an air-liquid interface. Biomed Microdevices. 2009 Oct;11(5):1081-9. doi:   10.1007/s10544-009-9325-5. Epub 2009 May 30. PubMed PMID: 19484389.

Abdullah F, Gabre-Kidan A, Zhang Y, Sharpe L, Chang DC. Report of 2,087,915 surgical admissions in U.S. children: inpatient mortality rates by procedure and specialty. World J Surg. 2009 Dec;33(12):2714-21. doi: 10.1007/s00268-009-0219-8. PubMed PMID: 19795164.

Stewart-Jones G, Wadle A, Hombach A, Shenderov E, Held G, Fischer E, Kleber S, Nuber N, Stenner-Liewen F, Bauer S, McMichael A, Knuth A, Abken H, Hombach AA, Cerundolo V, Jones EY, Renner C. Rational development of high-affinity T-cell receptor-like antibodies. Proc Natl Acad Sci U S A. 2009 Apr 7;106(14):5784-8. doi: 10.1073/pnas.0901425106. Epub 2009 Mar 23. Erratum in: Proc Natl Acad Sci U S A. 2009 Jun 30;106(26):10872. Nuber, Natko [added]. PubMed PMID: 19307587; PubMed Central PMCID: PMC2667008.

Aleksic M, Dushek O, Zhang H, Shenderov E, Chen JL, Cerundolo V, Coombs D, van der Merwe PA. Dependence of T cell antigen recognition on T cell receptor-peptide MHC confinement time. Immunity. 2010 Feb 26;32(2):163-74. doi: 10.1016/j.immuni.2009.11.013. Epub 2010 Feb 4. PubMed PMID: 20137987; PubMed Central PMCID: PMC2862301.

Ishizuka J, Grebe K, Shenderov E, Peters B, Chen Q, Peng Y, Wang L, Dong T, Pasquetto V, Oseroff C, Sidney J, Hickman H, Cerundolo V, Sette A, Bennink JR,McMichael A, Yewdell JW. Quantitating T cell cross-reactivity for unrelated peptide antigens. J Immunol. 2009 Oct 1;183(7):4337-45. doi: 10.4049/jimmunol.0901607. Epub 2009 Sep 4. PubMed PMID: 19734234; PubMed Central PMCID: PMC2762195.

Park JS, Voitenko N, Petralia RS, Guan X, Xu JT, Steinberg JP, Takamiya K, Sotnik A, Kopach O, Huganir RL, Tao YX. Persistent inflammation induces GluR2 internalization via NMDA receptor-triggered PKC activation in dorsal horn neurons. J Neurosci. 2009 Mar 11;29(10):3206-19. PubMed PMID: 19279258; PubMed Central PMCID: PMC2664544.

Suber T, Rosen A. Apoptotic cell blebs: repositories of autoantigens and contributors to immune context. Arthritis Rheum. 2009 Aug;60(8):2216-9. PubMed PMID: 19644864.

Lee JS, Green JJ, Love KT, Sunshine J, Langer R, Anderson DG. Gold, poly(beta-amino ester) nanoparticles for small interfering RNA delivery. Nano Lett. 2009 Jun;9(6):2402-6. PubMed PMID: 19422265; PubMed Central PMCID: PMC2728206.

Sunshine J, Bhise N, Green JJ. Degradable polymers for gene delivery. Conf Proc IEEE Eng Med Biol Soc. 2009;2009:2412-5. PubMed PMID: 19964958.

Sunshine J, Green JJ, Mahon KP, Yang F, Eltoukhy AA, Ngyuyen DN, Langer R, Anderson DG. “Small-Molecule End-Groups of Linear Polymer Determine Cell-type Gene-Delivery Efficacy.”  (Advanced Materials, 21(48) pg 4947). Wiley Online Library, Published Online: 15 Aug 2009.

Tadross MR, Park SA, Veeramani B, Yue DT. Robust approaches to quantitative ratiometric FRET imaging of CFP/YFP fluorophores under confocal microscopy. J Microsc. 2009 Jan;233(1):192-204. PubMed PMID: 19196425; PubMed Central PMCID: PMC2877369.

Tang SC, Shapiro TA. Newly identified antibacterial compounds are topoisomerase poisons in African trypanosomes. Antimicrob Agents Chemother. 2010 Feb;54(2):620-6. Epub 2009 Dec 14. PubMed PMID: 20008775; PubMed Central PMCID: PMC2812133.

Gustin JP, Karakas B, Weiss MB, Abukhdeir AM, Lauring J, Garay JP, Cosgrove D, Tamaki A, Konishi H, Konishi Y, Mohseni M, Wang G, Rosen DM, Denmeade SR, Higgins MJ, Vitolo MI, Bachman KE, Park BH. Knockin of mutant PIK3CA activates multiple oncogenic pathways. Proc Natl Acad Sci U S A. 2009 Feb 24;106(8):2835-40. Epub 2009 Feb 5. PubMed PMID: 19196980; PubMed Central PMCID: PMC2636736.

McGirt MJ, Sutter EG, Xu R, Sciubba DM, Wolinsky JP, Witham TF, Gokaslan ZL, Bydon A. Biomechanical comparison of translaminar versus pedicle screws at T1 and T2 in long subaxial cervical constructs. Neurosurgery. 2009 Dec;65(6 Suppl):167-72; discussion 172. PubMed PMID: 19934991.

Hsieh PC, Xu R, Sciubba DM, McGirt MJ, Nelson C, Witham TF, Wolinksy JP, Gokaslan ZL. Long-term clinical outcomes following en bloc resections for sacral chordomas and chondrosarcomas: a series of twenty consecutive patients. Spine (Phila Pa 1976). 2009 Sep 15;34(20):2233-9. PubMed PMID: 19752710.

Xu R, Bydon M, Gokaslan ZL, Wolinsky JP, Witham TF, Bydon A. Epidural steroid injection resulting in epidural hematoma in a patient despite strict adherence to anticoagulation guidelines. J Neurosurg Spine. 2009 Sep;11(3):358-64. PubMed PMID: 19769520.

Xu R, Garcés-Ambrossi GL, McGirt MJ, Witham TF, Wolinsky JP, Bydon A, Gokaslan ZL, Sciubba DM. Thoracic vertebrectomy and spinal reconstruction via anterior, posterior, or combined approaches: clinical outcomes in 91 consecutive patients with metastatic spinal tumors. J Neurosurg Spine. 2009 Sep;11(3):272-84. PubMed PMID: 19769508.

Chang TC, Zeitels LR, Hwang HW, Chivukula RR, Wentzel EA, Dews M, Jung J, Gao P, Dang CV, Beer MA, Thomas-Tikhonenko A, Mendell JT. Lin-28B transactivation is necessary for Myc-mediated let-7 repression and proliferation. Proc Natl Acad Sci U S A. 2009 Mar 3;106(9):3384-9. Epub 2009 Feb 11. PubMed PMID: 19211792; PubMed Central PMCID: PMC2651245.

2008 (MD-PhD student bolded/italics)

Zhou Q, Agoston AT, Atadja P, Nelson WG, Davidson NE. Inhibition of histone deacetylases promotes ubiquitin-dependent proteasomal degradation of DNA methyltransferase 1 in human breast cancer cells. Mol Cancer Res. 2008 May;6(5):873-83. PubMed PMID: 18505931.

Awad MM, Calkins H, Judge DP; Medscape. Mechanisms of disease: molecular genetics of arrhythmogenic right ventricular dysplasia/cardiomyopathy. Nat Clin Pract Cardiovasc Med. 2008 May;5(5):258-67. Epub 2008 Apr 1. Review. PubMed PMID: 18382419; PubMed Central PMCID: PMC2822988.

Andrade A, Bailey JR, Xu J, Philp FH, Quinn TC, Williams TM, Ray SC, Thomas DL, Blankson JN. CD4+ T cell depletion in an untreated HIV type 1-infected human leukocyte antigen-B*5801-positive patient with an undetectable viral load. Clin Infect Dis. 2008 Apr 15;46(8):e78-82. PubMed PMID: 18444844; PubMed Central PMCID: PMC2664682.

Bailey JR, Brennan TP, O’Connell KA, Siliciano RF, Blankson JN. Evidence of CD8+ T-cell-mediated selective pressure on human immunodeficiency virus type 1 nef in HLA-B*57+ elite suppressors. J Virol. 2009 Jan;83(1):88-97. Epub 2008 Oct 22. PubMed PMID: 18945771; PubMed Central PMCID: PMC2612327

Gandhi SK, Siliciano JD, Bailey JR, Siliciano RF, Blankson JN. Role of APOBEC3G/F-mediated hypermutation in the control of human immunodeficiency virus type 1 in elite suppressors. J Virol. 2008 Mar;82(6):3125 -30. Epub 2007 Dec 12. PubMed PMID: 18077705; PubMed Central PMCID: PMC2259015.

Bailey JR, O’Connell K, Yang HC, Han Y, Xu J, Jilek B, Williams TM, Ray SC, Siliciano RF, Blankson JN. Transmission of human immunodeficiency virus type 1 from a patient who developed AIDS to an elite suppressor. J Virol. 2008 Aug;82(15):7395-410. Epub 2008 May 21. PubMed PMID: 18495769; PubMed Central PMCID: PMC2493308.

Arepally A, Barnett BP, Patel TH, Howland V, Boston RC, Kraitchman DL, Malayeri AA. Catheter-directed gastric artery chemical embolization suppresses systemic ghrelin levels in porcine model. Radiology. 2008 Oct;249(1):127-33. Erratum in: Radiology. 2008 Dec;249(3):1083. Patel, Tarek T [corrected to Patel, Tarak H]. PubMed PMID: 18796671; PubMed Central PMCID: PMC2657856.

Bassik N, Abebe BT, Gracias DH. Solvent driven motion of lithographically fabricated gels. Langmuir. 2008 Nov 4;24(21):12158-63. Epub 2008 Sep 30. PubMed PMID: 18823132.

Bassik N. and D. H. Gracias. 3D Lithographically Structured Self-Assembled Biomedical Devices in Nanomedicine Science and Engineering: Design of Capsules, Motors, Implants, Robots & Devices, editor Mark Schultz, Artech House. 2008.

Bassik N.,  Stern, GM,  Jamal, M, Gracias, DH.  Patterning thin film mechanical properties to drive assembly of complex 3D structures. Advanced Materials 2008 Dec. 17;20 (4): 4760-4764  Advanced Materials (DOI: 10.1002/ adma.200801759)

Randhawa JS, Leong TG, Bassik N, Benson BR, Jochmans MT, Gracias DH. Pick-and-place using chemically actuated microgrippers. J Am Chem Soc. 2008 Dec 24;130(51):17238-9. PubMed PMID: 19053402.

Burger IM, Kass NE, Sunshine JH, Siegelman SS. The use of CT for screening: a national survey of radiologists’ activities and attitudes. Radiology. 2008 Jul;248(1):160-8. Epub 2008 May 15. PubMed PMID: 18483231; PubMed Central PMCID: PMC3110656.

Aich U, Campbell CT, Elmouelhi N, Weier CA, Sampathkumar SG, Choi SS, Yarema KJ. Regioisomeric SCFA attachment to hexosamines separates metabolic flux from cytotoxicity and MUC1 suppression. ACS Chem Biol. 2008 Apr 18;3(4):230-40. Epub 2008 Mar 14. PubMed PMID: 18338853.

Campbell CT, Aich U, Weier CA, Wang JJ, Choi SS, Wen MM, Maisel K, Sampathkumar SG, Yarema KJ. Targeting pro-invasive oncogenes with short chain fatty acid-hexosamine analogues inhibits the mobility of metastatic MDA-MB-231 breast cancer cells. J Med Chem. 2008Dec 25;51(24):8135-47. PubMed PMID:19053749; PubMed Central PMCID: PMC2657678.

Cheong R, Hoffmann A, Levchenko A. Understanding NF-kappaB signaling via mathematical modeling. Mol Syst Biol. 2008;4:192. Epub 2008 May 6. PubMed PMID:18463616; PubMed Central PMCID: PMC2424295

Cheong R, Levchenko A. Wires in the soup: quantitative models of cell signaling. Trends Cell Biol. 2008 Mar;18(3):112-8. Epub 2008 Feb 21. Review. PubMed PMID: 18291655.

Cheong R, Wang CJ, Levchenko A. High content cell screening in a microfluidic device. Mol Cell Proteomics. 2009 Mar;8(3):433-42. Epub 2008 Oct 24. PubMed PMID:18953019; PubMed Central PMCID:  PMC2649807.

Chivukula RR, Mendell JT. Circular reasoning: microRNAs and cell-cycle control. Trends Biochem Sci. 2008 Oct;33(10):474-81. Epub 2008 Sep 5. Review. PubMed PMID: 18774719; PubMed Central PMCID: PMC2824243

Allen G, Simpkins CE, Segev D, Warren D, King K, Taube J, Locke J, Baldwin W, Haas M, Chivukula R, Montgomery RA. Rapid accomodation of an A1 renal allograft 2009;162:35-46. Epub 2008 Oct 31. PubMed PMID: 19001812.

Soderlund KA, Chivukula RR, Russell SD, Conte JV, Mudd JO, Halushka MK. Prognostic value of left ventricular apical tissue removed for HeartMate II left ventricular assist device placement. Cardiovasc Pathol. 2009 Jul-Aug;18(4):217-22. Epub 2008 Aug 15. PubMed PMID: 18706833.

Downey AS, Chong CR, Graczyk TK, Sullivan DJ. Efficacy of pyrvinium pamoate against Cryptosporidium parvum infection in vitro and in a neonatal mouse model. Antimicrob Agents Chemother. 2008 Sep;52 (9):3106-12. Epub 2008 Jun 30. PubMed PMID: 18591280; PubMed Central PMCID: PMC2533469.

Ren YR, Pan F, Parvez S, Fleig A, Chong CR, Xu J, Dang Y, Zhang J, Jiang H, Penner R, Liu JO. Clofazimine inhibits human Kv1.3 potassium channel by perturbing calcium oscillation in T lymphocytes. PLoS One. 2008;3(12):e4009. Epub 2008 Dec 23. PubMed PMID: 19104661; PubMed Central PMCID: PMC2602975.

Leary RJ, Lin JC, Cummins J, Boca S, Wood LD, Parsons DW, Jones S, Sjöblom T,  Park BH, Parsons R, Willis J, Dawson D, Willson JK, Nikolskaya T, Nikolsky Y, Kopelovich L, Papadopoulos N, Pennacchio LA, Wang TL, Markowitz SD, Parmigiani G,Kinzler KW, Vogelstein B, Velculescu VE. Integrated analysis of homozygous deletions, focal amplifications, and sequence alterations in breast and colorectal cancers. Proc Natl Acad Sci U S A. 2008 Oct 21;105(42):16224-9. Epub 2008 Oct 13. PubMed PMID: 18852474; PubMed Central PMCID: PMC2571022.

Dowdy DW, O’Brien MA, Bishai D. Cost-effectiveness of novel diagnostic tools for the diagnosis of tuberculosis. Int J Tuberc Lung Dis. 2008 Sep;12(9):1021-9. PubMed PMID: 18713499.

Nachega JB, Hislop M, Dowdy DW, Gallant JE, Chaisson RE, Regensberg L, Maartens G. Efavirenz versus nevirapine-based initial treatment of HIV infection: clinical and virological outcomes in Southern African adults. AIDS. 2008 Oct 18;22(16):2117-25. PubMed PMID: 18832875; PubMed Central PMCID: PMC2659649.

Dowdy, D.W., R.E. Chaisson, G. Maartens, E.L. Corbett, and S.E. Dorman. 2008. Impact of enhanced tuberculosis diagnosis in South Africa: a mathematical model of expanded culture and drug susceptibility testing. Proc. Natl. Acad. Sci. U. S. A. 105:11293-11298. PMID:18695217. PMCID:PMC2516234.

Dowdy DW, Dinglas V, Mendez-Tellez PA, Bienvenu OJ, Sevransky J, Dennison CR, Shanholtz C, Needham DM. Intensive care unit hypoglycemia predicts depression during early recovery from acute lung injury. Crit Care Med. 2008 Oct;36(10):2726-33. PubMed PMID: 18766087; PubMed Central PMCID: PMC2605796.

Dowdy DW, Lourenço MC, Cavalcante SC, Saraceni V, King B, Golub JE, Bishai D, Durovni B, Chaisson RE, Dorman SE. Impact and cost-effectiveness of culture for diagnosis of tuberculosis in HIV-infected Brazilian adults. PLoS One. 2008;3(12):e4057. Epub 2008 Dec 29. PubMed PMID: 19129940; PubMed Central PMCID: PMC2614861.

Eliades SJ, Wang X. Chronic multi-electrode neural recording in free-roaming monkeys. J Neurosci Methods. 2008 Jul 30;172(2):201-14. Epub 2008 May 16. PubMed PMID: 18572250; PubMed Central PMCID: PMC2553366.

Eliades SJ, Wang X. Neural substrates of vocalization feedback monitoring in primate auditory cortex. Nature. 2008 Jun 19;453(7198):1102-6. Epub 2008 May 4.PubMed PMID: 18454135.

Kamiya A, Tan PL, Kubo K, Engelhard C, Ishizuka K, Kubo A, Tsukita S, Pulver AE, Nakajima K, Cascella NG, Katsanis N, Sawa A. Recruitment of PCM1 to the centrosome by the cooperative action of DISC1 and BBS4: a candidate for psychiatric illnesses. Arch Gen Psychiatry. 2008 Sep;65(9):996-1006. PubMed PMID: 18762586; PubMed Central PMCID: PMC2727928.

Congdon NG, Patel N, Esteso P, Chikwembani F, Webber F, Msithini RB, Ratcliffe A. The association between refractive cutoffs for spectacle provision and visual improvement among school-aged children in South Africa. Br J Ophthalmol. 2008 Jan;92(1):13-8. Epub 2007 Jun 25. PubMed PMID: 17591673.

Gandhi SK, Siliciano JD, Bailey JR, Siliciano RF, Blankson JN. Role of APOBEC3G/F-mediated hypermutation in the control of human immunodeficiency virus type 1 in elite suppressors. J Virol. 2008 Mar;82(6):3125 -30. Epub 2007 Dec 12. PubMed PMID: 18077705; PubMed Central PMCID: PMC2259015.

Li Y, Fan X, Goodwin CR, Laterra J, Xia S. Hepatocyte growth factor enhances death receptor-induced apoptosis by up-regulating DR5. BMC Cancer. 2008 Nov 7;8:325. PubMed PMID: 18992144; PubMed Central PMCID: PMC2590617.

An W, Han JS, Schrum CM, Maitra A, Koentgen F, Boeke JD. Conditional activation of a single-copy L1 transgene in mice by Cre. Genesis. 2008 Jul;46(7):373-83. PubMed PMID: 18615728; PubMed Central PMCID: PMC2614868.

Harris, TJ, E.L. Hipkiss, S. Borzillary, S. Wada, J.F. Grosso, H.R. Yen, D. Getnet, T.C. Bruno, M.V. Goldberg, D.M. Pardoll, T.L. DeWeese, and C.G. Drake. 2008. Radiotherapy augments the immune response to prostate cancer in a time-dependent manner. Prostate 68:1319-1329. PMID:18561247.

Harris TA, Yamakuchi M, Ferlito M, Mendell JT, Lowenstein CJ. MicroRNA-126 regulates endothelial expression of vascular cell adhesion molecule 1. Proc Natl Acad Sci U S A. 2008 Feb 5;105(5):1516-21. Epub 2008 Jan 28. PubMed PMID: 18227515; PubMed Central PMCID: PMC2234176.

Healy ZR, Zhu F, Stull JD, Konstantopoulos K. Elucidation of the signaling network of COX-2 induction in sheared chondrocytes: COX-2 is induced via a Rac/MEKK1/MKK7/JNK2/c-Jun-C/EBPbeta-dependent pathway. Am J Physiol Cell Physiol. 2008 May;294(5):C1146-57. Epub 2008 Mar 26. PubMed PMID: 18367585.

Howard DL, Strobino D, Sherman SG, Crum RM. Timing of incarceration during pregnancy and birth outcomes: exploring racial differences. Matern Child Health J. 2009 Jul;13(4):457-66. Epub 2008 Jun 17. PubMed PMID: 18561009.

Howard DL, Strobino D, Sherman S, Crum R. Within prisons, is there an association between the quantity of prenatal care and infant birthweight?Paediatr Perinat Epidemiol. 2008 Jul;22(4):369-78. PubMed PMID: 18578751.

Herman JM, Swartz MJ, Hsu CC, Winter J, Pawlik TM, Sugar E, Robinson R, LaheruDA, Jaffee E, Hruban RH, Campbell KA, Wolfgang CL, Asrari F, Donehower R, HidalgoM, Diaz LA Jr, Yeo C, Cameron JL, Schulick RD, Abrams R. Analysis offluorouracil-based adjuvant chemotherapy and radiation after pancreaticoduodenectomy for ductal adenocarcinoma of the pancreas: results of a large, prospectively collected database at the Johns Hopkins Hospital. J Clin Oncol. 2008 Jul 20;26(21):3503-10. PubMed PMID: 18640931.

Köttgen A, Hsu CC, Coresh J, Shuldiner AR, Berthier-Schaad Y, Gambhir TR, Smith MW, Boerwinkle E, Kao WH. The association of podocin R229Q polymorphism with increased albuminuria or reduced estimated GFR in a large population-based sample of US adults. Am J Kidney Dis. 2008 Nov;52(5):868-75. Epub 2008 May 21. PubMed PMID: 18499321; PubMed Central PMCID: PMC2597304.

Sapkota A, Hsu CC, Zaridze D, Shangina O, Szeszenia-Dabrowska N, Mates D, Fabiánová E, Rudnai P, Janout V, Holcatova I, Brennan P, Boffetta P, Hashibe M. Dietary risk factors for squamous cell carcinoma of the upper aerodigestive tract in central and eastern Europe. Cancer Causes Control. 2008 Dec;19(10):1161-70. Epub 2008 May 30. PubMed PMID: 18512121.

Moore LE, Hung R, Karami S, Boffetta P, Berndt S, Hsu CC, Zaridze D, Janout V, Kollarova H, Bencko V, Navratilova M, Szeszenia-Dabrowska N, Mates D, Mukeria A, Holcatova I, Yeager M, Chanock S, Garcia-Closas M, Rothman N, Chow WH, Brennan P. Folate metabolism genes, vegetable intake and renal cancer risk in central Europe. Int J Cancer. 2008 Apr 15;122(8):1710-5. PubMed PMID: 18098291.

Johnson TV, Bull ND, Martin KR. Transplantation prospects for the inner retina. Eye (Lond). 2009 Oct;23(10):1980-4. doi: 10.1038/eye.2008.376. Epub 2008 Dec 19. Review. PubMed PMID: 19098702.

Bull ND, Johnson TV, Martin KR. Stem cells for neuroprotection in glaucoma. Prog Brain Res. 2008;173:511-9. doi: 10.1016/S0079-6123(08)01135-7. PubMed PMID:  18929131.

Johnson TV, Martin KR. Development and characterization of an adult retinal explant organotypic tissue culture system as an in vitro intraocular stem cell transplantation model. Invest Ophthalmol Vis Sci. 2008 Aug;49(8):3503-12. doi: 10.1167/iovs.07-1601. Epub 2008 Apr 11. PubMed PMID: 18408186.

Chakraborty A, Koldobskiy MA, Sixt KM, Juluri KR, Mustafa AK, Snowman AM, van Rossum DB, Patterson RL, Snyder SH. HSP90 regulates cell survival via inositol hexakisphosphate kinase-2. Proc Natl Acad Sci U S A. 2008 Jan 29;105(4):1134-9. Epub 2008 Jan 14. PubMed PMID: 18195352; PubMed Central PMCID: PMC2234104.

Sen N, Hara MR, Kornberg MD, Cascio MB, Bae BI, Shahani N, Thomas B, Dawson TM, Dawson VL, Snyder SH, Sawa A. Nitric oxide-induced nuclear GAPDH activates p300/CBP and mediates apoptosis. Nat Cell Biol. 2008 Jul;10(7):866-73. Epub 2008 Jun 15. PubMed PMID: 18552833; PubMed Central PMCID: PMC2689382.

Jones S, Zhang X, Parsons DW, Lin JC, Leary RJ, Angenendt P, Mankoo P, Carter H, Kamiyama H, Jimeno A, Hong SM, Fu B, Lin MT, Calhoun ES, Kamiyama M, Walter K, Nikolskaya T, Nikolsky Y, Hartigan J, Smith DR, Hidalgo M, Leach SD, Klein AP, Jaffee EM, Goggins M, Maitra A, Iacobuzio-Donahue C, Eshleman JR, Kern SE, Hruban RH, Karchin R, Papadopoulos N, Parmigiani G, Vogelstein B, Velculescu VE, Kinzler KW. Core signaling pathways in human pancreatic cancers revealed by global genomic analyses. Science. 2008 Sep 26;321(5897):1801-6. Epub 2008 Sep 4. PubMed PMID: 18772397; PubMed Central PMCID:PMC2848990.

Yu X, Lin J, Zack DJ, Mendell JT, Qian J. Analysis of regulatory network topology reveals functionally distinct classes of microRNAs. Nucleic Acids Res. 2008 Nov;36(20):6494-503. Epub 2008 Oct 15. PubMed PMID:18927108; PubMed Central PMCID: PMC2582613.

Lin J, Li M. Molecular profiling in the age of cancer genomics. Expert Rev Mol Diagn. 2008 May;8(3):263-76. Review. PubMed PMID: 18598106.

Leary RJ, Lin JC, Cummins J, Boca S, Wood LD, Parsons DW, Jones S, Sjöblom T, Park BH, Parsons R, Willis J, Dawson D, Willson JK, Nikolskaya T, Nikolsky Y, Kopelovich L, Papadopoulos N, Pennacchio LA, Wang TL, Markowitz SD, Parmigiani G, Kinzler KW, Vogelstein B, Velculescu VE. Integrated analysis of homozygous deletions, focal amplifications, and sequence alterations in breast and colorectal cancers. Proc Natl Acad Sci U S A. 2008 Oct 21;105(42):16224-9. Epub 2008 Oct 13. PubMed PMID: 18852474; PubMed Central PMCID: PMC2571022.

Parsons DW, Jones S, Zhang X, Lin JC, Leary RJ, Angenendt P, Mankoo P, Carter H, Siu IM, Gallia GL, Olivi A, McLendon R, Rasheed BA, Keir S, Nikolskaya T, Nikolsky Y, Busam DA, Tekleab H, Diaz LA Jr, Hartigan J, Smith DR, Strausberg RL, Marie SK, Shinjo SM, Yan H, Riggins GJ, Bigner DD, Karchin R, Papadopoulos N, Parmigiani G, Vogelstein B, Velculescu VE, Kinzler KW. An integrated genomic analysis of human glioblastoma multiforme. Science. 2008 Sep 26;321(5897):1807-12. Epub 2008 Sep 4. PubMed PMID: 18772396; PubMed Central PMCID: PMC2820389.

Parmigiani G, Boca S, Lin J, Kinzler KW, Velculescu V, Vogelstein B. Design and analysis issues in genome-wide somatic mutation studies of cancer. Genomics. 2009 Jan;93(1):17-21. Epub 2008 Aug 23. Review. PubMed PMID: 18692126; PubMed Central PMCID: PMC2820387.

Arking DE, Cutler DJ, Brune CW, Teslovich TM, West K, Ikeda M, Rea A, Guy M, Lin S, Cook EH, Chakravarti A. A common genetic variant in the neurexin superfamily member CNTNAP2 increases familial risk of autism. Am J Hum Genet. 2008 Jan;82(1):160-4. doi: 10.1016/j.ajhg.2007.09.015. PubMed PMID: 18179894; PubMed Central PMCID: PMC2253968.

Lin S, Carvalho B, Cutler DJ, Arking DE, Chakravarti A, Irizarry RA. Validation and extension of an empirical Bayes method for SNP calling on Affymetrix microarrays. Genome Biol. 2008 Apr 3;9(4):R63. PubMed PMID: 18387188;  PubMed Central PMCID: PMC2643934

Deppmann CD, Mihalas S, Sharma N, Lonze BE, Niebur E, Ginty DD. A model for neuronal competition during development. Science. 2008 Apr 18;320(5874):369-73. Epub 2008 Mar 6. PubMed PMID: 18323418.

Amzel LM, Huang CH, Mandelker D, Lengauer C, Gabelli SB, Vogelstein B. Structural comparisons of class I phosphoinositide 3-kinases. Nat Rev Cancer. 2008 Sep;8(9):665-9. PubMed PMID: 18633356; PubMed Central PMCID: PMC2847604.

Huang CH, Mandelker D, Gabelli SB, Amzel LM. Insights into the oncogenic effects of PIK3CA mutations from the structure of p110alpha/p85alpha. Cell Cycle. 2008 May 1;7(9):1151-6. Epub 2008 Feb 27. Review. PubMed PMID: 18418043.

Reti IM, Miskimon M, Dickson M, Petralia RS, Takamiya K, Bland R, Saini J, During MJ, Huganir RL, Baraban JM. Activity-dependent secretion of neuronal activity regulated pentraxin from vasopressin neurons into the systemic circulation. Neuroscience. 2008 Jan 24;151(2):352-60. Epub 2007 Nov 12. PubMed PMID: 18082971; PubMed Central PMCID: PMC2342909.

Yang G, Wu L, Jiang B, Yang W, Qi J, Cao K, Meng Q, Mustafa AK, Mu W, Zhang S, Snyder SH, Wang R. H2S as a physiologic vasorelaxant: hypertension in mice with deletion of cystathionine gamma-lyase. Science. 2008 Oct 24;322(5901):587-90. PubMed PMID: 18948540; PubMed Central PMCID: PMC2749494.

Chakraborty A, Koldobskiy MA, Sixt KM, Juluri KR, Mustafa AK, Snowman AM, van Rossum DB, Patterson RL, Snyder SH. HSP90 regulates cell survival via inositol hexakisphosphate kinase-2. Proc Natl Acad Sci U S A. 2008 Jan 29;105(4):1134-9. Epub 2008 Jan 14. PubMed PMID: 18195352; PubMed Central PMCID: PMC2234104.

Hikida T, Mustafa AK, Maeda K, Fujii K, Barrow RK, Saleh M, Huganir RL, Snyder SH, Hashimoto K, Sawa A. Modulation of D-serine levels in brains of mice lacking PICK1. Biol Psychiatry. 2008 May 15;63(10):997 -1000. Epub 2008 Jan 11. PubMed PMID: 18191108; PubMed Central PMCID: PMC2715963

Kim HS, Young MJ, Narayan AK, Hong K, Liddell RP, Streiff MB. A comparison of clinical outcomes with retrievable and permanent inferior vena cava filters. J Vasc Interv Radiol. 2008 Mar;19(3):393-9. PubMed PMID: 18295699.

Noah, Y.A. A Cultural Perspective. Johns Hopkins Public Health, 2008

Rajaii F, Bitzer ZT, Xu Q, Sockanathan S. Expression of the dominant negative retinoid receptor, RAR403, alters telencephalic progenitor proliferation,survival, and cell fate specification. Dev Biol. 2008 Apr 15;316 (2):371-82. Epub 2008 Feb 13. PubMed PMID: 18329011.

Pierfelice TJ, Schreck KC, Eberhart CG, Gaiano N. Notch, neural stem cells, and brain tumors. Cold Spring Harb Symp Quant Biol. 2008;73:367-75. Epub 2008 Nov 6. Review. PubMed PMID: 19022772.

Sedaghat AR, German J, Teslovich TM, Cofrancesco J Jr, Jie CC, Talbot CC Jr, Siliciano RF. Chronic CD4+ T-cell activation and depletion in human immunodeficiency virus type 1 infection: type I interferon-mediated disruption of T-cell dynamics. J Virol. 2008 Feb;82(4):1870-83. Epub 2007 Dec 12. PubMed PMID: 18077723; PubMed Central PMCID: PMC2258719.

Sedaghat AR, Dinoso JB, Shen L, Wilke CO, Siliciano RF. Decay dynamics of HIV-1 depend on the inhibited stages of the viral life cycle. Proc Natl Acad Sci U S A. 2008 Mar 25;105(12):4832-7. Epub 2008 Mar 24. PubMed PMID: 18362342; PubMed Central PMCID: PMC2290747.

Shen L, Peterson S, Sedaghat AR, McMahon MA, Callender M, Zhang H, Zhou Y,Pitt E, Anderson KS, Acosta EP, Siliciano RF. Dose-response curve slope sets class-specific limits on inhibitory potential of anti-HIV drugs. Nat Med. 2008 Jul;14(7):762-6. Epub 2008 Jun 15. PubMed PMID: 18552857; PubMed Central PMCID: PMC2743464.

Sedaghat AR, Siliciano RF, Wilke CO. Low-level HIV-1 replication and the dynamics of the resting CD4+ T cell reservoir for HIV-1 in the setting of HAART. BMC Infect Dis. 2008 Jan 2;8:2. PubMed PMID: 18171475; PubMed Central PMCID: PMC2254415.

Suber TL, Casciola-Rosen L, Rosen A. Mechanisms of disease: autoantigens as clues to the pathogenesis of myositis. Nat Clin Pract Rheumatol. 2008 Apr;4(4):201-9. Epub 2008 Mar 4. Review. PubMed PMID: 18319710.

Suber TL. The Journal of Student National Medical Association-articles written in the following issues: Universalized Healthcare, Global Warming and Superinfections, War and Health, and The Pipeline and Physician- Researcher Initiative Issue from Spring 2007-Winter 2008. “What You’re Writing: A Day’s Work.” Urbanite. October 2007 Issue No 40.

Tadross MR, Dick IE, Yue DT. Mechanism of local and global Ca2+ sensing by calmodulin in complex with a Ca2+ channel. Cell. 2008 Jun 27;133(7):1228-40. PubMed PMID: 18585356.

Dick IE, Tadross MR, Liang H, Tay LH, Yang W, Yue DT. A modular switch for spatial Ca2+ selectivity in the calmodulin regulation of CaV channels. Nature. 2008 Feb 14;451(7180):830-4. Epub 2008 Jan 30. PubMed PMID: 18235447.

Fung HK, Floudas CA, Taylor MS, Zhang L, Morikis D. Toward full-sequence de novo protein design with flexible templates for human beta-defensin-2. Biophys J. 2008 Jan 15;94(2):584-99. Epub 2007 Sep 7. PubMed PMID: 17827237; PubMed Central PMCID: PMC2157230.

Taylor MS, Fung HK, Rajgaria R, Filizola M, Weinstein H, Floudas CA. Mutations affecting the oligomerization interface of G-protein-coupled receptors revealed by a novel de novo protein design framework. Biophys J. 2008 Apr 1;94(7):2470-81. Epub 2008 Jan 4. PubMed PMID: 18178645; PubMed Central PMCID: PMC2267121.

Kim PS, Armstrong TD, Song H, Wolpoe ME, Weiss V, Manning EA, Huang LQ, Murata S, Sgouros G, Emens LA, Reilly RT, Jaffee EM. Antibody association with HER-2/neu-targeted vaccine enhances CD8 T cell responses in mice through Fc-mediated activation of DCs. J Clin Invest. 2008 May;118(5):1700-11. PubMed PMID: 18398507; PubMed Central PMCID: PMC2289797.

Wickramasinghe SR, Alvania RS, Ramanan N, Wood JN, Mandai K, Ginty DD. Serum response factor mediates NGF-dependent target innervation by embryonic DRG sensory neurons. Neuron. 2008 May 22;58 (4):532-45. PubMed PMID: 18498735; PubMed Central PMCID: PMC2689374.

Newbern J, Zhong J, Wickramasinghe RS, Li X, Wu Y, Samuels I, Cherosky N, Karlo JC, O’Loughlin B, Wikenheiser J, Gargesha M, Doughman YQ, Charron J, Ginty DD, Watanabe M, Saitta SC, Snider WD, Landreth GE. Mouse and human phenotypes indicate a critical conserved role for ERK2 signaling in neural crest development. Proc Natl Acad Sci U S A. 2008 Nov 4;105(44):17115-20. Epub 2008 Oct 24. PubMed PMID: 18952847; PubMed Central PMCID: PMC2579387.

Leary RJ, Lin JC, Cummins J, Boca S, Wood LD, Parsons DW, Jones S, Sjöblom T, Park BH, Parsons R, Willis J, Dawson D, Willson JK, Nikolskaya T, Nikolsky Y, Kopelovich L, Papadopoulos N, Pennacchio LA, Wang TL, Markowitz SD, Parmigiani G, Kinzler KW, Vogelstein B, Velculescu VE. Integrated analysis of homozygous deletions, focal amplifications, and sequence alterations in breast and colorectal cancers. Proc Natl Acad Sci U S A. 2008 Oct 21;105(42):16224-9. Epub 2008 Oct 13. PubMed PMID: 18852474; PubMed Central PMCID: PMC2571022.

Xu R, Sciubba DM, Gokaslan ZL, Bydon A. Ossification of the ligamentum flavum in a Caucasian man. J Neurosurg Spine. 2008 Nov;9(5):427-37. PubMed PMID: 18976173.

Bastian PJ, Ellinger J, von Rücker A, Müller SC, Yegnasubramanian S, Nelson WG, Stief CG. [CpG island hypermethylation of the DNA. Perspectives of a molecular biomarker for prostate cancer]. Urologe A. 2008 Sep;47(9):1205-7. doi:  10.1007/s00120-008-1836-9. German. PubMed PMID: 18651120.

Bastian PJ, Palapattu GS, Yegnasubramanian S, Rogers CG, Lin X, Mangold LA, Trock B, Eisenberger MA, Partin AW, Nelson WG. CpG island hypermethylation profile in the serum of men with clinically localized and hormone refractory metastatic prostate cancer. J Urol. 2008 Feb;179(2):529-34; discussion 534-5. PubMed PMID: 18076941; PubMed Central PMCID: PMC2702714.

Netto GJ, Nakai Y, Nakayama M, Jadallah S, Toubaji A, Nonomura N, Albadine R,  Hicks JL, Epstein JI, Yegnasubramanian S, Nelson WG, De Marzo AM. Global DNA hypomethylation in intratubular germ cell neoplasia and seminoma, but not in nonseminomatous male germ cell tumors. Mod Pathol. 2008 Nov;21(11):1337-44. doi: 10.1038/modpathol.2008.127. Epub 2008 Jul 11. PubMed PMID: 18622385.

Thye T, Nejentsev S, Intemann CD, Browne EN, Chinbuah MA, Gyapong J, Osei I, Owusu-Dabo E, Zeitels LR, Herb F, Horstmann RD, Meyer CG. MCP-1 promoter variant  -362C associated with protection from pulmonary tuberculosis in Ghana, West Africa. Hum Mol Genet. 2009 Jan 15;18(2):381-8. doi: 10.1093/hmg/ddn352. Epub 2008 Oct 20. PubMed PMID: 18940815; PubMed Central PMCID: PMC2638774.

2007  (MD-PhD student bolded/italics)

Nelson WG, Yegnasubramanian S, Agoston AT, Bastian PJ, Lee BH, Nakayama M, De Marzo AM. Abnormal DNA methylation, epigenetics, and prostate cancer. Front Biosci. 2007 May 1;12:4254-66. Review. PubMed PMID: 17485372.

Agoston AT, Argani P, De Marzo AM, Hicks JL, Nelson WG. Retinoblastoma pathway dysregulation causes DNA methyltransferase 1 overexpression in cancer via MAD2-mediated inhibition of the anaphase-promoting complex. Am J Pathol. 2007 May;170(5):1585-93. PubMed PMID: 17456764; PubMed Central PMCID: PMC1854953.

Awad MM, Devgan L, Kamel IR, Torbensen M, Choti MA. Microwave ablation in a hepatic porcine model: correlation of CT and histopathologic findings. HPB (Oxford). 2007;9(5):357-62. PubMed PMID: 18345319; PubMed Central PMCID: PMC2225513.

Bailey JR, Zhang H, Wegweiser BW, Yang HC, Herrera L, Ahonkhai A, Williams TM, Siliciano RF, Blankson JN. Evolution of HIV-1 in an HLA-B*57-positive patient during virologic escape. J Infect Dis. 2007 Jul 1;196(1):50-5. Epub 2007 May 17. PubMed PMID: 17538883.

Blankson JN, Bailey JR, Thayil S, Yang HC, Lassen K, Lai J, Gandhi SK, Siliciano JD, Williams TM, Siliciano RF. Isolation and characterization of replication-competent human immunodeficiency virus type 1 from a subset of elite suppressors. J Virol. 2007 Mar;81(5):2508-18. Epub 2006 Dec 6. PubMed PMID: 17151109; PubMed Central PMCID: PMC1865922.

Gandhi SK, Siliciano JD, Bailey JR, Siliciano RF, Blankson JN. Role of APOBEC3G/F-mediated hypermutation in the control of human immunodeficiency virus type 1 in elite suppressors. J Virol. 2008 Mar;82(6):3125-30. Epub 2007 Dec 12. PubMed PMID: 18077705; PubMed Central PMCID: PMC2259015.

Walczak P, Kedziorek DA, Gilad AA, Barnett BP, Bulte JW. Applicability and limitations of MR tracking of neural stem cells with asymmetric cell division and rapid turnover: the case of the shiverer dysmyelinated mouse brain. Magn Reson Med. 2007 Aug;58(2):261-9. Erratum in: Magn Reson Med. 2007 Dec;58(6):1299. PubMed PMID: 17654572.

Arepally A, Barnett BP, Montgomery E, Patel TH. Catheter-directed gastric artery chemical embolization for modulation of systemic ghrelin levels in a porcine model: initial experience. Radiology. 2007 Jul;244(1):138-43. PubMed PMID: 17581899.

Barnett BP, Arepally A, Karmarkar PV, Qian D, Gilson WD, Walczak P, Howland V,Lawler L, Lauzon C, Stuber M, Kraitchman DL, Bulte JW. Magnetic resonance-guided, real-time targeted delivery and imaging of magnetocapsules immunoprotecting pancreatic islet cells. Nat Med. 2007 Aug;13(8):986-91. Epub 2007 Jul 29. PubMed PMID: 17660829.

Randall CL, Leong TG, Bassik N, Gracias DH. 3D lithographically fabricated nanoliter containers for drug delivery. Adv Drug Deliv Rev. 2007 Dec 22;59(15):1547-61. Epub 2007 Sep 4. Review. PubMed PMID: 17919768.

Farrag TY, Agrawal N, Sheth S, Bettegowda C, Ewertz M, Kim M, Tufano RP. Algorithm for safe and effective reoperative thyroid bed surgery for recurrent/persistent papillary thyroid carcinoma. Head Neck. 2007 Dec;29(12):1069-74. PubMed PMID: 17563908.

Diaz LA Jr, Foss CA, Thornton K, Nimmagadda S, Endres CJ, Uzuner O, Seyler TM, Ulrich SD, Conway J, Bettegowda C, Agrawal N, Cheong I, Zhang X, Ladenson PW, Vogelstein BN, Mont MA, Zhou S, Kinzler KW, Vogelstein B, Pomper MG. Imaging of musculoskeletal bacterial infections by [124I]FIAU-PET/CT. PLoS One. 2007 Oct 10;2(10):e1007. PubMed PMID: 17925855; PubMed Central PMCID: PMC1994593.

Plomp M, McCaffery JM, Cheong I, Huang X, Bettegowda C, Kinzler KW, Zhou S, Vogelstein B, Malkin AJ. Spore coat architecture of Clostridium novyi NT spores. J Bacteriol. 2007 Sep;189(17):6457-68. Epub 2007 Jun 22. PubMed PMID: 17586633; PubMed Central PMCID: PMC1951917.

Burger I, Schill K, Goodman S. Disclosure of individual surgeon’s performance rates during informed consent: ethical and epistemological considerations. Ann Surg. 2007 Apr;245(4):507-13. PubMed PMID: 17414595; PubMed Central PMCID: PMC1877054.

Campbell CT, Sampathkumar SG, Yarema KJ. Metabolic oligosaccharide engineering: perspectives, applications, and future directions. Mol Biosyst. 2007 Mar;3(3):187-94. Epub 2007 Jan 12. Review. PubMed PMID: 17308665.

Douglas ES, Chandra RA, Bertozzi CR, Mathies RA, Francis MB. Self-assembled cellular microarrays patterned using DNA barcodes. Lab Chip. 2007 Nov;7(11):1442-8. Epub 2007 Sep 19. PubMed PMID: 17960269.

Chaudhuri D, Issa JB, Yue DT. Elementary mechanisms producing facilitation of  Cav2.1 (P/Q-type) channels. J Gen Physiol. 2007 May;129(5):385-401. Epub 2007 Apr 16. PubMed PMID: 17438119; PubMed Central PMCID: PMC2154375.

Herzig S, Khan IF, Gründemann D, Matthes J, Ludwig A, Michels G, Hoppe UC, Chaudhuri D, Schwartz A, Yue DT, Hullin R. Mechanism of Ca(v)1.2 channel modulation by the amino terminus of cardiac beta2-subunits. FASEB J. 2007 May;21(7):1527-38. Epub 2007 Feb 8. PubMed PMID: 17289923.

Kaneda A, Wang CJ, Cheong R, Timp W, Onyango P, Wen B, Iacobuzio-Donahue CA, Ohlsson R, Andraos R, Pearson MA, Sharov AA, Longo DL, Ko MS, Levchenko A, Feinberg AP. Enhanced sensitivity to IGF-II signaling links loss of imprinting of IGF2 to increased cell proliferation and tumor risk. Proc Natl Acad Sci U S A. 2007 Dec 26;104(52):20926-31. Epub 2007 Dec 17. PubMed PMID: 18087038; PubMed Central PMCID: PMC2409243.

Chong CR, Auld DS. Catalysis of zinc transfer by D-penicillamine to secondary chelators. J Med Chem. 2007 Nov 1;50(22):5524-7. Epub 2007 Oct 6. PubMed PMID 17918925.

McMahon MA, Jilek BL, Brennan TP, Shen L, Zhou Y, Wind-Rotolo M, Xing S, Bhat S, Hale B, Hegarty R, Chong CR, Liu JO, Siliciano RF, Thio CL. The HBV drug entecavir – effects on HIV-1 replication and resistance. N Engl J Med. 2007 Jun 21;356(25):2614-21. PubMed PMID: 17582071; PubMed Central PMCID: PMC3069686.

Chong CR, Xu J, Lu J, Bhat S, Sullivan DJ Jr, Liu JO. Inhibition of angiogenesis by the antifungal drug itraconazole. ACS Chem Biol. 2007 Apr 24;2(4):263-70. PubMed PMID: 17432820.

Chong CR, Sullivan DJ Jr. New uses for old drugs. Nature. 2007 Aug 9;448(7154):645-6. PubMed PMID: 17687303.

Byrne ST, Gu P, Zhou J, Denkin SM, Chong C, Sullivan D, Liu JO, Zhang Y. Pyrrolidine dithiocarbamate and diethyldithiocarbamate are active against growing and nongrowing persister Mycobacterium tuberculosis. Antimicrob Agents Chemother. 2007 Dec;51(12):4495-7. Epub 2007 Sep 17. PubMed PMID: 17876006; PubMed Central PMCID: PMC2168016.

Cottrell TR, Griffith CL, Liu H, Nenninger AA, Doering TL. The pathogenic fungus Cryptococcus neoformans expresses two functional GDP-mannose transporters with distinct expression patterns and roles in capsule synthesis. Eukaryot Cell. 2007 May;6(5):776-85. Epub 2007 Mar 9. PubMed PMID: 17351078; PubMed Central PMCID: PMC1899245.

Sharma D, Cukras AR, Rogers EJ, Southworth DR, Green R. Mutational analysis of S12 protein and implications for the accuracy of decoding by the ribosome. J Mol Biol. 2007 Dec 7;374(4):1065-76. Epub 2007 Oct 6. PubMed PMID: 17967466; PubMed Central PMCID: PMC2200631

Leary RJ, Cummins J, Wang TL, Velculescu VE. Digital karyotyping. Nat Protoc. 2007;2(8):1973-86. PubMed PMID: 17703209.

Peters BA, St Croix B, Sjöblom T, Cummins JM, Silliman N, Ptak J, Saha S, Kinzler KW, Hatzis C, Velculescu VE. Large-scale identification of novel transcripts in the human genome. Genome Res. 2007 Mar;17(3):287-92. Epub 2007 Jan 31. PubMed PMID: 17267814; PubMed Central PMCID: PMC1800919.

Mizutani K, Yoon K, Dang L, Tokunaga A, Gaiano N. Differential Notch signalling distinguishes neural stem cells from intermediate progenitors. Nature. 2007 Sep 20;449(7160):351-5. Epub 2007 Aug 26. PubMed PMID: 17721509.

Dickert NW, Sugarman J. Getting the ethics right regarding research in the emergency setting: lessons from the PolyHeme study. Kennedy Inst Ethics J. 2007 Jun;17(2):153-69. Review. PubMed PMID: 18018997.

Dickert N, DeRiemer K, Duffy PE, Garcia-Garcia L, Mutabingwa TK, Sina BJ, Tindana P, Lie R. Ancillary-care responsibilities in observational research: two  cases, two issues. Lancet. 2007 Mar 10;369(9564):874-7. PubMed PMID: 17350458; PubMed Central PMCID: PMC2945388.

Nachega JB, Hislop M, Dowdy DW, Chaisson RE, Regensberg L, Maartens G. Adherence to nonnucleoside reverse transcriptase inhibitor-based HIV therapy and virologic outcomes. Ann Intern Med. 2007 Apr 17;146(8):564-73. PubMed PMID: 17438315.

Stevens RD, Dowdy DW, Michaels RK, Mendez-Tellez PA, Pronovost PJ, Needham DM. Neuromuscular dysfunction acquired in critical illness: a systematic review. Intensive Care Med. 2007 Nov;33(11):1876-91. Epub 2007 Jul 17. Review. PubMed PMID: 17639340.

Mustafa AK, Kumar M, Selvakumar B, Ho GP, Ehmsen JT, Barrow RK, Amzel LM, Snyder SH. Nitric oxide S-nitrosylates serine racemase, mediating feedback inhibition of D-serine formation. Proc Natl Acad Sci U S A. 2007 Feb 20;104(8):2950-5. Epub 2007 Feb 9. PubMed PMID: 17293453; PubMed Central PMCID: PMC1815287

Esteso P, Castanon A, Toledo S, Rito MA, Ervin A, Wojciechowski R, Congdon NG. Correction of moderate myopia is associated with improvement in self-reported visual functioning among Mexican school-aged children. Invest Ophthalmol Vis Sci. 2007 Nov;48(11):4949-54. PubMed PMID: 17962444.

Congdon NG, Patel N, Esteso P, Chikwembani F, Webber F, Msithini RB, Ratcliffe A. The association between refractive cutoffs for spectacle provision and visual improvement among schoolaged children in South Africa. Br J Ophthalmol. 2008 Jan;92(1):13-8. Epub 2007 Jun 25. PubMed PMID: 17591673.

Fields EL, Bogart LM, Smith KC, Malebranche DJ, Ellen J, Schuster MA. HIV risk and perceptions of masculinity among young black men who have sex with men. J Adolesc Health. 2012 Mar;50(3):296-303. doi: 10.1016/j.jadohealth.2011.07.007. Epub 2011 Oct 2. PubMed PMID: 22325136; PubMed Central PMCID: PMC3281559.

Gandhi SK, Siliciano JD, Bailey JR, Siliciano RF, Blankson JN. Role of APOBEC3G/F-mediated hypermutation in the control of human immunodeficiency virus type 1 in elite suppressors. J Virol. 2008 Mar;82(6):3125-30. Epub 2007 Dec 12. PubMed PMID: 18077705; PubMed Central PMCID: PMC2259015.

Goodwin CR, Kharkar S, Wang P, Pujari S, Rigamonti D, Williams MA. Evaluation and treatment of patients with suspected normal pressure hydrocephalus on long-term warfarin anticoagulation therapy. Neurosurgery. 2007 Mar;60(3):497-501; discussion 502. PubMed PMID: 17327794.

Goodwin CR. SNMA Perspective: Career Issues. Journal of Minority Medical Students. (2007) June.

Goodwin CR. SNMA Perspective: Education. Journal of Minority Medical Students. (2007) September.

Grosso JF, Kelleher CC, Harris TJ, Maris CH, Hipkiss EL, De Marzo A, Anders R, Netto G, Getnet D, Bruno TC, Goldberg MV, Pardoll DM, Drake CG. LAG-3 regulates CD8+ T cell accumulation and effector function in murine self- and tumor-tolerance systems. J Clin Invest. 2007 Nov;117(11):3383-92. PubMed PMID: 17932562; PubMed Central PMCID: PMC2000807.

Goldberg MV, Maris CH, Hipkiss EL, Flies AS, Zhen L, Tuder RM, Grosso JF, Harris TJ, Getnet D, Whartenby KA, Brockstedt DG, Dubensky TW Jr, Chen L, Pardoll DM, Drake CG. Role of PD -1 and its ligand, B7-H1, in early fate decisions of CD8 T cells. Blood. 2007 Jul 1;110(1):186-92. Epub 2007 Mar 28. PubMed PMID: 17392506; PubMed Central PMCID: PMC1896112.

Harris TJ, Grosso JF, Yen HR, Xin H, Kortylewski M, Albesiano E, Hipkiss EL, Getnet D, Goldberg MV, Maris CH, Housseau F, Yu H, Pardoll DM, Drake CG. Cutting edge: An in vivo requirement for STAT3 signaling in TH17 development and TH17-dependent autoimmunity. J Immunol. 2007 Oct 1;179(7):4313-7. PubMed PMID:17878325.

Napier SL, Healy ZR, Schnaar RL, Konstantopoulos K. Selectin ligand expression regulates the initial vascular interactions of colon carcinoma cells: the roles of CD44v and alternative sialofucosylated selectin ligands. J Biol Chem. 2007 Feb 9;282(6):3433-41. Epub 2006 Nov 29. PubMed PMID: 17135256.

Talalay P, Fahey JW, Healy ZR, Wehage SL, Benedict AL, Min C, Dinkova-Kostova AT. Sulforaphane mobilizes cellular defenses that protect skin against damage by UV radiation. Proc Natl Acad Sci U S A. 2007 Oct 30;104(44):17500-5. Epub 2007 Oct 23. PubMed PMID: 17956979; PubMed Central PMCID: PMC2077285.

Mustafa AK, Kumar M, Selvakumar B, Ho GP, Ehmsen JT, Barrow RK, Amzel LM, Snyder SH. Nitric oxide S-nitrosylates serine racemase, mediating feedback inhibition of D-serine formation. Proc Natl Acad Sci U S A. 2007 Feb 20;104(8):2950-5. Epub 2007 Feb 9. PubMed PMID: 17293453; PubMed Central PMCID: PMC1815287.

Liu SI, Huang HC, Yeh ZT, Hwang LC, Tjung JJ, Huang CR, Hsu CC, Ho CJ, Sun IW,Fang CK, Shiau SJ. Controlled trial of problem-solving therapy and consultation-liaison for common mental disorders in general medical settings in Taiwan. Gen Hosp Psychiatry. 2007 Sep-Oct;29(5):402-8. PubMed PMID: 17888806.

Hsu CC, Chow WH, Boffetta P, Moore L, Zaridze D, Moukeria A, Janout V, Kollarova H, Bencko V, Navratilova M, Szeszenia-Dabrowska N, Mates D, Brennan P. Dietary risk factors for kidney cancer in Eastern and Central Europe. Am J Epidemiol. 2007 Jul 1;166(1):62-70. Epub 2007 Apr 23. PubMed PMID: 17456477.

Moore LE, Brennan P, Karami S, Hung RJ, Hsu C, Boffetta P, Toro J, Zaridze D, Janout V, Bencko V, Navratilova M, Szeszenia-Dabrowska N, Mates D, Mukeria A, Holcatova I, Welch R, Chanock S, Rothman N, Chow WH. Glutathione S-transferase polymorphisms, cruciferous vegetable intake and cancer risk in the Central and Eastern European Kidney Cancer Study. Carcinogenesis. 2007 Sep;28(9):1960-4. Epub 2007 Jul 7. PubMed PMID: 17617661.

Kim SF, Huang AS, Snowman AM, Teuscher C, Snyder SH. From the Cover: Antipsychotic drug-induced weight gain mediated by histamine H1 receptor-linked activation of hypothalamic AMP-kinase. Proc Natl Acad Sci U S A. 2007 Feb 27;104(9):3456-9. Epub 2007 Feb 20. PubMed PMID: 17360666; PubMed Central PMCID:  PMC1805549.

Liu YV, Hubbi ME, Pan F, McDonald KR, Mansharamani M, Cole RN, Liu JO, Semenza GL. Calcineurin promotes hypoxia-inducible factor 1alpha expression by dephosphorylating RACK1 and blocking RACK1 dimerization. J Biol Chem. 2007 Dec 21;282(51):37064-73. Epub 2007 Oct 26. PubMed PMID: 17965024; PubMed Central PMCID: PMC3754800.

Baek JH, Liu YV, McDonald KR, Wesley JB, Hubbi ME , Byun H, Semenza GL. Spermidine/spermine-N1-acetyltransferase 2 is an essential component of the ubiquitin ligase complex that regulates hypoxia-inducible factor 1alpha. J Biol Chem. 2007 Aug 10;282(32):23572-80. Epub 2007 Jun 8. PubMed PMID: 17558023.

Chaudhuri D, Issa JB, Yue DT. Elementary mechanisms producing facilitation of Cav2.1 (P/Q-type) channels. J Gen Physiol. 2007 May;129(5):385-401. Epub 2007 Apr 16. PubMed PMID: 17438119; PubMed Central PMCID: PMC2154375.

Allen RH, Cha SL, Kranker LM, Johnson TL, Gurewitsch ED. Comparing mechanical fetal response during descent, crowning, and restitution among deliveries with and without shoulder dystocia. Am J Obstet Gynecol. 2007 Jun;196(6):539.e1-5. PubMed PMID: 17547886.

Gurewitsch ED, Johnson TL, Allen RH. After shoulder dystocia: managing the subsequent pregnancy and delivery. Semin Perinatol. 2007 Jun;31(3):185-95. Review. PubMed PMID: 17531900.

Nelson WG, Yegnasubramanian S, Agoston AT, Bastian PJ, Lee BH, Nakayama M, De Marzo AM. Abnormal DNA methylation, epigenetics, and prostate cancer. Front Biosci. 2007 May 1;12:4254-66. Review. PubMed PMID: 17485372.

Parmigiani G., Lin JC, Boca SM, Sjoblom T, Jones S, Wood LD, Parsons DW, Barber TD, , Buckhaults P, Markowitz SD, Park BH, Bachman KE, Papadopoulos N, Vogelstein B, Kinzler KW, Velculescu VE. (2007) Response to Comments on “The consensus coding sequences of human breast and colorectal cancers”. Science. 2007 Sep 14;317(5844):1500.

Parmigiani G, Lin JC, Boca, S., Sjoblom T, Kinzler K, Velculescu VE, and Vogelstein B. (2007) “Statistical Methods for the Analysis of Cancer Genome Sequencing Data” (October 2007). Johns Hopkins University, Dept. of Biostatistics Working Papers. Working Paper 126.

Wood LD, Parsons DW, Jones S, Lin J, Sjöblom T, Leary RJ, Shen D, Boca SM, Barber T, Ptak J, Silliman N, Szabo S, Dezso Z, Ustyanksky V, Nikolskaya T, Nikolsky Y, Karchin R, Wilson PA, Kaminker JS, Zhang Z, Croshaw R, Willis J, Dawson D, Shipitsin M, Willson JK, Sukumar S, Polyak K, Park BH, Pethiyagoda CL, Pant PV, Ballinger DG, Sparks AB, Hartigan J, Smith DR, Suh E, Papadopoulos N, Buckhaults P, Markowitz SD, Parmigiani G, Kinzler KW, Velculescu VE, Vogelstein B. The genomic landscapes of human breast and colorectal cancers. Science. 2007 Nov 16;318(5853):1108-13. Epub 2007 Oct 11. PubMed PMID: 17932254.

Yu X, Lin J, Zack DJ, Qian J. Identification of tissue-specific cis-regulatory modules based on interactions between transcription factors. BMC Bioinformatics. 2007 Nov 9;8:437. PubMed PMID: 17996093; PubMed Central PMCID: PMC2194798.

Lin J, Sjöblom T. Genome-wide mutational analyses of breast and colorectal cancers. Discov Med. 2007 Feb;7(37):13-9. PubMed PMID: 17343800.

Lin J, Qian J. Systems biology approach to integrative comparative genomics. Expert Rev Proteomics. 2007 Feb;4(1):107-19. Review. PubMed PMID: 17288519.

Lin J, Gan CM, Zhang X, Jones S, Sjöblom T, Wood LD, Parsons DW, Papadopoulos  N, Kinzler KW, Vogelstein B, Parmigiani G, Velculescu VE. A multidimensional analysis of genes mutated in breast and colorectal cancers. Genome Res. 2007 Sep;17(9):1304-18. Epub 2007 Aug 10. PubMed PMID: 17693572; PubMed Central PMCID: PMC1950899.

Sabeti, P.C., …, S. Lin, G…, and J. Stewart.  Genome-wide detection and characterization of positive selection in human populations. 2007. Nature 449:913-918. PMID:17943131.

International HapMap Consortium, K.A. Frazer, …,S. Lin, … and J. Stewart. A second generation human haplotype map of over 3.1 million SNPs.  2007. Nature 449:851-861. PMID:17943122.

Huang CH, Mandelker D, Schmidt-Kittler O, Samuels Y, Velculescu VE, Kinzler KW, Vogelstein B, Gabelli SB, Amzel LM. The structure of a human p110alpha/p85alpha complex elucidates the effects of oncogenic PI3Kalpha mutations. Science. 2007 Dec 14;318(5857):1744-8. PubMed PMID: 18079394.

Reti IM, Miskimon M, Dickson M, Petralia RS, Takamiya K, Bland R, Saini J, During MJ, Huganir RL, Baraban JM. Activity-dependent secretion of neuronal activity regulated pentraxin from vasopressin neurons into the systemic circulation. Neuroscience. 2008 Jan 24;151(2):352-60. Epub 2007 Nov 12. PubMed PMID: 18082971; PubMed Central PMCID: PMC2342909.

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