Medical Scientist Training/MD-PhD Program

Publications

2011 | 2010 | 2009 | 2008 | 2007

2011  (MD-PhD student bolded/italics)

Rabi SA, O’Connell KA, Nikolaeva D, Bailey JR, Jilek BL, Shen L, Page KR, Siliciano RF, Blankson JN. Unstimulated primary CD4+ T cells from HIV-1-positive elite suppressors are fully susceptible to HIV-1 entry and productive infection. J Virol. 2011 Jan;85(2):979-86. Epub 2010 Nov 10. PubMed PMID: 21068257; PubMed Central PMCID: PMC3020020.

Barnett BP
, Ruiz-Cabello J, Hota P, Liddell R, Walczak P, Howland V, Chacko VP, Kraitchman DL, Arepally A, Bulte JW. Fluorocapsules for improved function, immunoprotection, and visualization of cellular therapeutics with MR, US, and CT imaging. Radiology. 2011 Jan;258(1):182-91. Epub 2010 Oct 22. PubMed PMID: 20971778; PubMed Central PMCID: PMC3009379.

Ruiz-Cabello J, Barnett BP, Bottomley PA, Bulte JW. Fluorine (19F) MRS and MRI in biomedicine. NMR Biomed. 2011 Feb;24(2):114-29. doi: 10.1002/nbm.1570. Epub 2010 Sep 15. PubMed PMID: 20842758; PubMed Central PMCID: PMC3051284.

Barnett BP, Gailloud P. Assessment of EmboGel–a selectively dissolvable radiopaque hydrogel for embolic applications. J Vasc Interv Radiol. 2011 Feb;22(2):203-11. Epub 2010 Dec 23. PubMed PMID: 21185201.

Barnett BP, Bressler J, Chen T, Hutchins GM, Crain BJ, Kaufmann WE. αB-crystallin negative astrocytic inclusions. Brain Dev. 2011 Apr;33(4):349-52.PubMed PMID: 20621427.

Stine MJ, Wang CJ, Moriarty WF, Ryu B, Cheong R, Westra WH, Levchenko A, Alani RM. Integration of genotypic and phenotypic screening reveals molecular mediators of melanoma-stromal interaction. Cancer Res. 2011 Apr 1;71(7):2433-44. Epub 2011 Feb 15. PubMed PMID: 21324919; PubMed Central PMCID: PMC3070809.

Hur EM, Yang IH, Kim DH, Byun J, Saijilafu, Xu WL, Nicovich PR, Cheong R, Levchenko A, Thakor N, Zhou FQ. Engineering neuronal growth cones to promote axon regeneration over inhibitory molecules. Proc Natl Acad Sci U S A. 2011 Mar 22;108(12):5057-62. Epub 2011 Mar 7. PubMed PMID: 21383151; PubMed Central PMCID: PMC3064397.

Pramanik D, Campbell NR, Karikari C, Chivukula R, Kent OA, Mendell JT, Maitra A. Restitution of tumor suppressor microRNAs using a systemic nanovector inhibits pancreatic cancer growth in mice. Mol Cancer Ther. 2011 May 27. [Epub ahead of print] PubMed PMID: 21622730.

Christman AL, Matsushita K, Gottesman RF, Mosley T, Alonso A, Coresh J, Hill-Briggs F, Sharrett AR, Selvin E. Glycated haemoglobin and cognitive decline: the Atherosclerosis Risk in Communities (ARIC) study. Diabetologia. 2011 Jul;54(7):1645-52. Epub 2011 Mar 1. PubMed PMID: 21360189.

Christman, AL, Selvin, E, Margolis, D, Lazarus, GS, Garza, LA (2011). Hemoglobin A1c Predicts Healing Rate in Diabetic Wounds. Journal of Investigative Dermatology. In Press.

Pierfelice TJ, Schreck KC, Dang L, Asnaghi L, Gaiano N, Eberhart CG. Notch3 activation promotes invasive glioma formation in a tissue site-specific manner. Cancer Res. 2011 Feb 1;71(3):1115-25. Epub 2011 Jan 18. PubMed PMID: 21245095; PubMed Central PMCID: PMC3076023.

Drummond R, Song D, Hawisher D, Wolf PL, Vazquez DE, F Nino D, Coimbra R, Cauvi DM, De Maio A. Acute Acalculous Cholecystitis-Like Phenotype in Scavenger Receptor A Knock-Out Mice. J Surg Res. 2011 Jan 22. [Epub ahead of print] PubMed PMID: 21474146.

Esteso P, Gearhart JD. The use of human embryonic stem cells in drug discovery. Counterpoint. Clin Pharmacol Ther. 2011 May;89(5):641-3. PubMed PMID: 21512522.

Ying M, Wang S, Sang Y, Sun P, Lal B, Goodwin CR, Guerrero-Cazares H, Quinones-Hinojosa A, Laterra J, Xia S. Regulation of glioblastoma stem cells by retinoic acid: role for Notch pathway inhibition. Oncogene. 2011 Mar 7. [Epub ahead of print] PubMed PMID: 21383690.

Goodwin CR, Recinos PF, Omeis I, Momin EN, Witham TF, Bydon A, Gokaslan ZL, Wolinsky JP. Prevention of facial pressure ulcers using the Mayfield clamp for sacral tumor resection. J Neurosurg Spine. 2011 Jan;14(1):85-7. Epub 2010 Dec 3. PubMed PMID: 21142454.

Goodwin CR, Lal B, Ho S, Taeger A, Zhou X, Xia S, Laterra J. PTEN reconstitution alters glioma responses to anti-HGF therapeutics. Accepted to Anti-Cancer Drugs.

Recinos PF, Goodwin CR, Quiñones-Hinojosa A, Brem H. Craniotomy for Sellar Tumors.  In Quiñones-Hinojosa A (ed): Schmidek and Sweet Operative Neurosurgical Techniques, 6th edition. In press.

Recinos PF, Goodwin CR, Quiñones-Hinojosa A. Foramen Magnum Tumors. In Rigamonti D (ed): Handbook of Neurosurgery .

Delgoffe GM, Pollizzi KN, Waickman AT, Heikamp E, Meyers DJ, Horton MR, Xiao B, Worley PF, Powell JD. The kinase mTOR regulates the differentiation of helper T cells through the selective activation of signaling by mTORC1 and mTORC2. Nat Immunol. 2011 Apr;12(4):295-303. Epub 2011 Feb 27. PubMed PMID: 21358638; PubMed Central PMCID: PMC3077821.

Howard DL, Strobino D, Sherman SG, Crum RM. Maternal incarceration during pregnancy and infant birthweight. Matern Child Health J. 2011 May;15(4):478-86.PubMed PMID: 20422272.

Hsu CC, Kao WL, Steffes MW, Gambir T, Brancati FL, Heilig CW, Shuldiner AR, Boerwinkle EA, Coresh J. Genetic variation of glucose transporter-1 (GLUT1) and albuminuria in 10,278 European Americans and African Americans: a case-control study in the Atherosclerosis Risk in Communities (ARIC) study. BMC Med Genet. 2011 Jan 19;12:16. PubMed PMID: 21247498; PubMed Central PMCID: PMC3034664.

Kinde I, Wu J, Papadopoulos N, Kinzler KW, Vogelstein B. Detection and quantification of rare mutations with massively parallel sequencing. Proc Natl Acad Sci U S A. 2011 Jun 7;108(23):9530-5. Epub 2011 May 17. PubMed PMID: 21586637.

Chakraborty A, Werner JK Jr, Koldobskiy MA, Mustafa AK, Juluri KR, Pietropaoli J, Snowman AM, Snyder SH. Casein kinase-2 mediates cell survival through phosphorylation and degradation of inositol hexakisphosphate kinase-2. Proc Natl Acad Sci U S A. 2011 Feb 8;108(6):2205-9. Epub 2011 Jan 24. PubMed PMID: 21262846; PubMed Central PMCID: PMC3038742.

Kim S, Kim SF, Maag D, Maxwell MJ, Resnick AC, Juluri KR, Chakraborty A, Koldobskiy MA, Cha SH, Barrow R, Snowman AM, Snyder SH. Amino acid signaling to mTOR mediated by inositol polyphosphate multikinase. Cell Metab. 2011 Feb 2;13(2):215-21. PubMed PMID: 21284988; PubMed Central PMCID: PMC3042716.

Koldobskiy MA, Snyder SH. Inositol pyrophosphates in cell death and life. Cell Cycle. 2011 Feb 15;10(4):568-70. Epub 2011 Feb 15. PubMed PMID: 21293185.

Wei X, Walia V, Lin JC, Teer JK, Prickett TD, Gartner J, Davis S; NISC Comparative Sequencing Program, Stemke-Hale K, Davies MA, Gershenwald JE, Robinson W, Robinson S, Rosenberg SA, Samuels Y. Exome sequencing identifies GRIN2A as frequently mutated in melanoma. Nat Genet. 2011 May;43(5):442-6. Epub 2011 Apr 15. PubMed PMID: 21499247.

Parsons DW, Li M, Zhang X, Jones S, Leary RJ, Lin JC, Boca SM, Carter H, Samayoa J, Bettegowda C, Gallia GL, Jallo GI, Binder ZA, Nikolsky Y, Hartigan J, Smith DR, Gerhard DS, Fults DW, VandenBerg S, Berger MS, Marie SK, Shinjo SM, Clara C, Phillips PC, Minturn JE, Biegel JA, Judkins AR, Resnick AC, Storm PB, Curran T, He Y, Rasheed BA, Friedman HS, Keir ST, McLendon R, Northcott PA, Taylor MD, Burger PC, Riggins GJ,Karchin R, Parmigiani G, Bigner DD, Yan H, Papadopoulos N, Vogelstein B, Kinzler KW, Velculescu VE. The genetic landscape of the childhood cancer medulloblastoma. Science. 2011 Jan 28;331(6016):435-9. Epub 2010 Dec 16. PubMed PMID: 21163964; PubMed Central PMCID: PMC3110744.

Link TM, Park U, Vonakis BM, Raben DM, Soloski MJ, Caterina MJ. TRPV2 has a pivotal role in macrophage particle binding and phagocytosis. Nat Immunol. 2010 Mar;11(3):232-9. Epub 2010 Jan 31. PubMed PMID: 20118928; PubMed Central PMCID: PMC2840267.

Long SS, Long C, Lai H, Macura KJ. Imaging strategies for right lower quadrant pain in pregnancy. AJR Am J Roentgenol. 2011 Jan;196(1):4-12. Review. PubMed PMID: 21178041.

Long CM, Bulte, JWM. In vivo imaging of vaccine nanoparticles. Nanoimaging. Pan Stanford Publishing. InPress.

Morris M, Maeda S, Vossel K, Mucke L. The many faces of tau. Neuron. 2011 May 12;70(3):410-26. PubMed PMID: 21555069.

Chakraborty A, Werner JK Jr, Koldobskiy MA, Mustafa AK, Juluri KR, Pietropaoli J, Snowman AM, Snyder SH. Casein kinase-2 mediates cell survival through phosphorylation and degradation of inositol hexakisphosphate kinase-2. Proc Natl Acad Sci U S A. 2011 Feb 8;108(6):2205-9. Epub 2011 Jan 24. PubMed PMID: 21262846; PubMed Central PMCID: PMC3038742.

Wilson BA, Wang H, Nacev BA, Mease RC, Liu JO, Pomper MG, Isaacs WB. High-Throughput Screen Identifies Novel Inhibitors of Cancer Biomarker {alpha}-Methylacyl Coenzyme A Racemase (AMACR/P504S). Mol Cancer Ther. 2011 May;10(5):825-38. Epub 2011 Mar 25. PubMed PMID: 21441411.

Nacev B, Low WK, Huang Z, Su T, Su Z, Alkuraya H, Kasuga D, Sun W, Trager M,Braun M, Fischer G, Zhang K, Liu JO. A calcineurin-independent mechanism of angiogenesis inhibition by a non-immunosuppressive Cyclosporin A analog. J Pharmacol Exp Ther. 2011 May 11. [Epub ahead of print] PubMed PMID: 21562139.

Parry EM, Alder JK, Qi X, Chen JJ, Armanios M. Syndrome complex of bone marrow failure and pulmonary fibrosis predicts germline defects in telomerase. Blood. 2011 May 26;117(21):5607-11. Epub 2011 Mar 24. PubMed PMID: 21436073.

Guo N, Parry EM, Li LS, Kembou F, Lauder N, Hussain MA, Berggren PO, Armanios M. Short telomeres compromise β-cell signaling and survival. PLoS One. 2011 Mar 10;6(3):e17858. PubMed PMID: 21423765; PubMed Central PMCID: PMC3053388.

Parry EM, Alder JK, Lee SS, Phillips JA 3rd, Loyd JE, Duggal P, Armanios M. Decreased dyskerin levels as a mechanism of telomere shortening in X-linked dyskeratosis congenita. J Med Genet. 2011 May;48(5):327 -33. Epub 2011 Mar 17. PubMed PMID: 21415081; PubMed Central PMCID: PMC3088476.

Rabi SA, O’Connell KA, Nikolaeva D, Bailey JR, Jilek BL, Shen L, Page KR, Siliciano RF, Blankson JN. Unstimulated primary CD4+ T cells from HIV-1-positive elite suppressors are fully susceptible to HIV-1 entry and productive infection. J Virol. 2011 Jan;85(2):979-86. Epub 2010 Nov 10. PubMed PMID: 21068257; PubMed Central PMCID: PMC3020020.

Spivak AM, Rabi SA, McMahon MA, Shan L, Sedaghat AR, Wilke CO, Siliciano RF. Dynamic Constraints on the Second Phase Compartment of HIV-Infected Cells. AIDS Res Hum Retroviruses. 2011 Jan 15. [Epub ahead of print] PubMed PMID: 21105850.

Shan L, Yang HC, Rabi SA, Bravo HC, Shroff NS, Irizarry RA, Zhang H, Margolick JB, Siliciano JD, Siliciano RF. Influence of host gene transcription level and orientation on HIV-1 latency in a primary-cell model. J Virol. 2011 Jun;85(11):5384-93. Epub 2011 Mar 23. PubMed PMID: 21430059.

Shen CJ, Raghavan S, Xu Z, Baranski JD, Yu X, Wozniak MA, Miller JS, Gupta M, Buckbinder L, Chen CS. Decreased cell adhesion promotes angiogenesis in a Pyk2-dependent manner. Exp Cell Res. 2011 Aug 1;317 (13):1860-71. Epub 2011 May 18. PubMed PMID: 21640103; PubMed Central PMCID: PMC3123418.

Pierfelice TJ, Schreck KC, Dang L, Asnaghi L, Gaiano N, Eberhart CG. Notch3 activation promotes invasive glioma formation in a tissue site-specific manner. Cancer Res. 2011 Feb 1;71(3):1115-25. Epub 2011 Jan 18. PubMed PMID: 21245095; PubMed Central PMCID: PMC3076023.

Shapiro AE, Tshabangu N, Golub JE, Martinson NA. Intention to quit smoking among human immunodeficiency virus infected adults in Johannesburg, South Africa. Int J Tuberc Lung Dis. 2011 Jan;15(1):140-2. PubMed PMID: 21276312.

Bhise NS, Shmueli RB, Sunshine JC, Tzeng SY, Green JJ. Drug delivery strategies for therapeutic angiogenesis and antiangiogenesis. Expert Opin Drug Deliv. 2011 Apr;8(4):485-504. Epub 2011 Feb 22. PubMed PMID: 21338327.

Tzeng SY, Guerrero-Cázares H, Martinez EE, Sunshine JC, Quiñones-Hinojosa A, Green JJ. Non-viral gene delivery nanoparticles based on Poly(β-amino esters) for treatment of glioblastoma. Biomaterials. 2011 Aug;32(23):5402-10. Epub 2011 May 4. PubMed PMID: 21536325.

Joel C Sunshine, Corey J Bishop and Jordan J Green. “Advances in polymeric and inorganic vectors for nonviral nucleic acid delivery.” Therapeutic Delivery. 2011; 2(4):493-521 In press.

Higgins MJ, Beaver JA, Wong HY, Gustin JP, Lauring JD, Garay JP, Konishi H, Mohseni M, Wang GM, Cidado J, Jelovac D, Cosgrove DP, Tamaki A, Abukhdeir AM,Park BH. PIK3CA mutations and EGFR overexpression predict for lithium sensitivity in human breast epithelial cells. Cancer Biol Ther. 2011 Feb 1;11(3):358-67. Epub 2011 Feb 1. PubMed PMID: 21124076; PubMed Central PMCID: PMC3047087.

Le DT, Ladle BH, Lee T, Weiss V, Yao X, Leubner A, Armstrong TD, Jaffee EM. CD8(+) Foxp3(+) tumor infiltrating lymphocytes accumulate in the context of an effective anti-tumor response. Int J Cancer. 2011 Aug 1;129(3):636-47. doi: 10.1002/ijc.25693. Epub 2010 Nov 12. PubMed PMID: 20857491; PubMed Central PMCID: PMC3064958.

Chakraborty A, Werner JK Jr, Koldobskiy MA, Mustafa AK, Juluri KR, Pietropaoli J, Snowman AM, Snyder SH. Casein kinase-2 mediates cell survival through phosphorylation and degradation of inositol hexakisphosphate kinase-2. Proc Natl Acad Sci U S A. 2011 Feb 8;108(6):2205-9. Epub 2011 Jan 24. PubMed PMID: 21262846; PubMed Central PMCID: PMC3038742.

Guo T, Mandai K, Condie BG, Wickramasinghe SR, Capecchi MR, Ginty DD. An evolving NGF-Hoxd1 signaling pathway mediates development of divergent neural circuits in vertebrates. Nat Neurosci. 2011 Jan;14 (1):31-6. Epub 2010 Dec 12. PubMed PMID: 21151121.

Xu R, Solakoglu C, Kretzer RM, McGirt MJ, Witham TF, Bydon A. Bilateral traumatic dislocation without fracture of the lumbosacral junction: case report and review of the literature. Spine (Phila Pa 1976). 2011 May 1;36(10):E662-8. PubMed PMID: 21358473.

Maag D, Maxwell MJ, Hardesty DA, Boucher KL, Choudhari N, Hanno AG, Ma JF, Snowman AS, Pietropaoli JW, Xu R, Storm PB, Saiardi A, Snyder SH, Resnick AC. Inositol polyphosphate multikinase is a physiologic PI3-kinase that activates Akt/PKB. Proc Natl Acad Sci U S A. 2011 Jan 25;108(4):1391-6. Epub 2011 Jan 10. PubMed PMID: 21220345; PubMed Central PMCID: PMC3029688.

Xu R, Solakoglu C, Maleki Z, McGirt MJ, Gokaslan ZL, Bydon A. Hemorrhagic synovial cyst: the possible role of initial trauma and subsequent microtrauma in its pathogenesis: case report. Neurosurgery. 2011 Mar;68(3):E858-65; discussion E865. Review. PubMed PMID: 21311282.

Garces-Ambrossi GL, McGirt MJ, Xu R, Attenello FA, Stewart A, Basdag H, Jallo GI, Gokaslan ZL, Weingart J. Suboccipital decompression for adult Chiari I malformation: Analysis of syrinx progression in 93 patients. Journal of Neurosurgery: Spine. Accepted with revisions. 2011.

Xu R, Ritzl EK, Sait M, Wolinsky JP, Sciubba DM, Witham TF, Gokaslan ZL, Bydon A. A role for motor and somatosensory evoked potentials during atnerior cervical decompression and fusion for patients with radiculopathy: Analysis of 57 consecutive cases. Surgical Neurology International. Accepted with revisions. 2011.

Xu R, McGirt MJ, Wolinsky JP, Witham TF, Gokaslan ZL, Bydon A. Safety and efficacy of bone morphogenic protein in posterior cervical spinal fusion in degenerative spine disorders. Surgical Neurology International. Accepted with revisions. 2011.

2010 (MD-PhD student bolded/italics)

Blankson, J.N., J.R. Bailey, aproductive infection. J Virol. 2011 Jan;85(2):979-86. Epub 2010 Nov 10. PubMed PMID: 21068257; PubMed Central PMCID: PMC3020020.

Rabi SA, O’Connell KA, Nikolaeva D, Bailey JR, Jilek BL, Shen L, Page KR, Siliciano RF, Blankson JN. Unstimulated primary CD4+ T cells from HIV-1-positive elite suppressors are fully susceptible to HIV-1 entry and productive infection. J Virol. 2011 Jan;85(2):979-86. Epub 2010 Nov 10. PubMed PMID: 21068257; PubMed Central PMCID: PMC3020020.

O’Connell KA, Brennan TP, Bailey JR, Ray SC, Siliciano RF, Blankson JN. Control of HIV-1 in elite suppressors despite ongoing replication and evolution in plasma virus. J Virol. 2010  Jul;84(14):7018-28. Epub 2010 May 5. PubMed PMID: 20444904; PubMed Central PMCID: PMC2898225.

Salgado M, Brennan TP, O’Connell KA, Bailey JR, Ray SC, Siliciano RF, Blankson JN. Evolution of the HIV-1 nef gene in HLA-B*57 positive elite suppressors. Retrovirology. 2010 Nov 8;7:94. PubMed PMID: 21059238; PubMed Central PMCID: PMC2993647.

Barnett BP, Ruiz-Cabello J, Hota P, Liddell R, Walczak P, Howland V, Chacko VP, Kraitchman DL, Arepally A, Bulte JW. Fluorocapsules for improved function, immunoprotection, and visualization of cellular therapeutics with MR, US, and CT imaging. Radiology. 2011 Jan;258(1):182-91. Epub 2010 Oct 22. PubMed PMID: 20971778; PubMed Central PMCID: PMC3009379.

Barnett BP, Hwang Y, Taylor MS, Kirchner H, Pfluger PT, Bernard V, Lin YY, Bowers EM, Mukherjee C, Song WJ, Longo PA, Leahy DJ, Hussain MA, Tschöp MH, Boeke JD, Cole PA. Glucose and weight control in mice with a designed ghrelin O-acyltransferase inhibitor. Science. 2010 Dec 17;330(6011):1689-92. Epub 2010 Nov 18. PubMed PMID: 21097901; PubMed Central PMCID: PMC3068526.

Ruiz-Cabello J, Barnett BP, Bottomley PA, Bulte JW. Fluorine (19F) MRS and MRI in biomedicine. NMR Biomed. 2011 Feb;24(2):114-29. doi: 10.1002/nbm.1570. Epub 2010 Sep 15. PubMed PMID: 20842758; PubMed Central PMCID: PMC3051284.

Barnett BP, Gailloud P. Assessment of EmboGel–a selectively dissolvable radiopaque hydrogel for embolic applications. J Vasc Interv Radiol. 2011 Feb;22(2):203-11. Epub 2010 Dec 23. PubMed PMID: 21185201.

Bassik N, Brafman A, Zarafshar AM, Jamal M, Luvsanjav D, Selaru FM, Gracias DH. Enzymatically triggered actuation of miniaturized tools. J Am Chem Soc. 2010 Nov 24;132(46):16314-7. Epub 2010 Sep 17. PubMed PMID: 20849106; PubMed Central PMCID: PMC2988106.

Jamal M, Bassik N, Cho JH, Randall CL, Gracias DH. Directed growth of fibroblasts into three dimensional micropatterned geometries via self-assembling scaffolds. Biomaterials. 2010 Mar;31(7):1683-90. PubMed PMID: 20022106; PubMed Central PMCID: PMC2813973.

Bennett MK, Kulaga HM, Reed RR. Odor-evoked gene regulation and visualization in olfactory receptor neurons. Mol Cell Neurosci. 2010 Apr;43(4):353-62. Epub 2010 Jan 18. PubMed PMID: 20080187.

Burke KP, Cox AL. Hepatitis C virus evasion of adaptive immune responses: a model for viral persistence. Immunol Res. 2010 Jul;47(1-3):216-27. Review. Erratum in: Immunol Res. 2010 Jul;47(1-3):285. PubMed PMID: 20066508; PubMed Central PMCID: PMC2910517.

Kim DH, Lipke EA, Kim P, Cheong R, Thompson S, Delannoy M, Suh KY, Tung L,Levchenko A. Nanoscale cues regulate the structure and function of macroscopic cardiac tissue constructs. Proc Natl Acad Sci U S A. 2010 Jan 12;107(2):565-70. Epub 2009 Dec 16. PubMed PMID: 20018748; PubMed Central PMCID: PMC2818944.

Fosbrink M, Aye-Han NN, Cheong R, Levchenko A, Zhang J. Visualization of JNK activity dynamics with a genetically encoded fluorescent biosensor. Proc Natl Acad Sci U S A. 2010 Mar 23;107(12):5459-64. Epub 2010 Mar 8. PubMed PMID: 20212108; PubMed Central PMCID: PMC2851826.

Fan D, Yin Z, Cheong R, Zhu FQ, Cammarata RC, Chien CL, Levchenko A. Subcellular-resolution delivery of a cytokine through precisely manipulated nanowires. Nat Nanotechnol. 2010 Jul;5(7):545-51. Epub 2010 Jun 13. PubMed PMID: 20543835; PubMed Central PMCID: PMC3118461.

Yin Z, Tao SC, Cheong R, Zhu H, Levchenko A. An integrated micro-electro-fluidic and protein arraying system for parallel analysis of cell responses to controlled microenvironments. Integr Biol (Camb). 2010 Sep;2 (9):416-23. Epub 2010 Aug 10. PubMed PMID: 20714638.

Cheong R, Paliwal S, Levchenko A. Models at the single cell level. Wiley Interdiscip Rev Syst Biol Med. 2010 Jan-Feb;2(1):34-48. Review. PubMed PMID: 20836009.

Compani B, Su T, Chang I, Cheng J, Shah KH, Whisenant T, Dou Y, Bergmann A, Cheong R, Wold B, Bardwell L, Levchenko A, Baldi P, Mjolsness E. A scalable and integrative system for pathway bioinformatics and systems biology. Adv Exp Med Biol. 2010;680:523-34. PubMed PMID: 20865537; PubMed Central PMCID: PMC3021415.

Cheong R, Levchenko A. Oscillatory signaling processes: the how, the why and the where. Curr Opin Genet Dev. 2010 Dec;20(6):665-9. Review. PubMed PMID: 20971631.

Persat A, Chivukula RR, Mendell JT, Santiago JG. Quantification of global microRNA abundance by selective isotachophoresis. Anal Chem. 2010 Dec 1;82(23):9631-5. PubMed PMID: 21062022.

Kent OA, Chivukula RR, Mullendore M, Wentzel EA, Feldmann G, Lee KH, Liu S, Leach SD, Maitra A, Mendell JT. Repression of the miR-143/145 cluster by oncogenic Ras initiates a tumor-promoting feed-forward pathway. Genes Dev. 2010 Dec 15;24(24):2754-9. PubMed PMID: 21159816.

Shim JS, Matsui Y, Bhat S, Nacev BA, Xu J, Bhang HE, Dhara S, Han KC, Chong CR, Pomper MG, So A, Liu JO. Effect of nitroxoline on angiogenesis and growth of human bladder cancer. J Natl Cancer Inst. 2010 Dec 15;102(24):1855-73. Epub 2010 Nov 18. PubMed PMID: 21088277; PubMed Central PMCID: PMC3001967.

Chong CR. An unnecessary death in Zambia. Am J Med. 2010 Jul;123(7):669. PubMed PMID: 20609692.

Kim J, Tang JY, Gong R, Kim J, Lee JJ, Clemons KV, Chong CR, Chang KS, Fereshteh M, Gardner D, Reya T, Liu JO, Epstein EH, Stevens DA, Beachy PA. Itraconazole, a commonly used antifungal that inhibits Hedgehog pathway activity and cancer growth. Cancer Cell. 2010 Apr 13;17(4):388-99. PubMed PMID: 20385363.

Christman AL, Vannorsdall TD, Pearlson GD, Hill-Briggs F, Schretlen DJ. Cranial volume, mild cognitive deficits, and functional limitations associated with diabetes in a community sample. Arch Clin Neuropsychol. 2010 Feb;25(1):49-59. Epub 2009 Nov 25. PubMed PMID: 19942595; PubMed Central PMCID: PMC2809552.

Basu AC, Tsai GE, Ma CL, Ehmsen JT, Mustafa AK, Han L, Jiang ZI, Benneyworth MA, Froimowitz MP, Lange N, Snyder SH, Bergeron R, Coyle JT. Targeted disruption of serine racemase affects glutamatergic neurotransmission and behavior. Mol Psychiatry. 2009 Jul;14(7):719-27. Epub 2008 Dec 9. Erratum in: Mol Psychiatry. 2010 Nov;15(11):1122. PubMed PMID: 19065142; PubMed Central PMCID: PMC2786989.

Christoforou N, Oskouei BN, Esteso P, Hill CM, Zimmet JM, Bian W, Bursac N, Leong KW, Hare JM, Gearhart JD. Implantation of mouse embryonic stem cell-derived cardiac progenitor cells preserves function of infarcted murine hearts. PLoS One. 2010 Jul 12;5(7):e11536. PubMed PMID: 20634944; PubMed Central PMCID: PMC2902505.

Peng YJ, Nanduri J, Raghuraman G, Souvannakitti D, Gadalla MM, Kumar GK, Snyder SH, Prabhakar NR. H2S mediates O2 sensing in the carotid body. Proc Natl Acad Sci U S A. 2010 Jun 8;107(23):10719-24. PubMed PMID: 20556885; PubMed Central PMCID: PMC2890835.

Gadalla MM, Snyder SH. Hydrogen sulfide as a gasotransmitter. J Neurochem. 2010 Apr;113(1):14-26. Epub 2010 Jan 12. Review. PubMed PMID: 20067586; PubMed Central PMCID: PMC2965526.

Loeys BL, Gerber EE, Riegert-Johnson D, Iqbal S, Whiteman P, McConnell V, Chillakuri CR, Macaya D, Coucke PJ, De Paepe A, Judge DP, Wigley F, Davis EC, Mardon HJ, Handford P, Keene DR, Sakai LY, Dietz HC. Mutations in fibrillin-1 cause congenital scleroderma: stiff skin syndrome. Sci Transl Med. 2010 Mar 17;2(23):23ra20. PubMed PMID: 20375004; PubMed Central PMCID: PMC2953713.

Goodwin CR, Laterra J. Neuro-oncology: unmasking the multiforme in glioblastoma. Nat Rev Neurol. 2010 Jun;6(6):304-5. PubMed PMID: 20531430.

Goodwin CR, Lal B, Zhou X, Ho S, Xia S, Taeger A, Murray J, Laterra J. Cyr61 mediates hepatocyte growth factor-dependent tumor cell growth, migration, and Akt activation. Cancer Res. 2010 Apr 1;70(7):2932-41. Epub 2010 Mar 16. PubMed PMID: 20233866; PubMed Central PMCID: PMC2848876.

Siegel ER, Lindberg DA, Campbell GP, Harless WG, Goodwin CR. Defining the next generation journal: The NLM-Elsevier interactive publications experiment. Inf Serv Use. 2010 Jan 1;30(1-2):17-30. PubMed PMID: 21165152; PubMed Central PMCID: PMC3001620.

Goodwin CR, Recinos PF, Omeis I, Momin EN, Witham TF, Bydon A, Gokaslan ZL, Wolinsky JP. Prevention of facial pressure ulcers using the Mayfield clamp for sacral tumor resection. J Neurosurg Spine. 2011 Jan;14(1):85-7. Epub 2010 Dec 3. PubMed PMID: 21142454.

Getnet D, Grosso JF, Goldberg MV, Harris TJ, Yen HR, Bruno TC, Durham NM, Hipkiss EL, Pyle KJ, Wada S, Pan F, Pardoll DM, Drake CG. A role for the transcription factor Helios in human CD4(+)CD25(+) regulatory T cells. Mol Immunol. 2010 Apr;47(7-8):1595-600. Epub 2010 Mar 11. PubMed PMID: 20226531; PubMed Central PMCID: PMC3060613.

Harris TA, Yamakuchi M, Kondo M, Oettgen P, Lowenstein CJ. Ets-1 and Ets-2 regulate the expression of microRNA-126 in endothelial cells. Arterioscler Thromb Vasc Biol. 2010 Oct;30(10):1990-7. Epub 2010 Jul 29. PubMed PMID: 20671229.

Kim PM, Duan X, Huang AS, Liu CY, Ming GL, Song H, Snyder SH. Aspartate racemase, generating neuronal D-aspartate, regulates adult neurogenesis. ProcNatl Acad Sci U S A. 2010 Feb 16;107(7):3175-9. Epub 2010 Jan 26. PubMed PMID: 20133766; PubMed Central PMCID: PMC2840285.

Chakraborty A, Koldobskiy MA, Bello NT, Maxwell M, Potter JJ, Juluri KR, Maag D, Kim S, Huang AS, Dailey MJ, Saleh M, Snowman AM, Moran TH, Mezey E, Snyder SH. Inositol pyrophosphates inhibit Akt  signaling, thereby regulating insulin sensitivity and weight gain. Cell. 2010 Dec 10;143(6):897-910. PubMed PMID: 21145457; PubMed Central PMCID: PMC3052691.

Leary RJ, Kinde I, Diehl F, Schmidt K, Clouser C, Duncan C, Antipova A, Lee C, McKernan K, De La Vega FM, Kinzler KW, Vogelstein B, Diaz LA Jr, Velculescu VE. Development of personalized tumor biomarkers using massively parallel sequencing. Sci Transl Med. 2010 Feb 24;2(20):20ra14. PubMed PMID: 20371490; PubMed Central PMCID: PMC2858564.

Koldobskiy MA, Chakraborty A, Werner JK Jr, Snowman AM, Juluri KR, Vandiver MS, Kim S, Heletz S, Snyder SH. p53-mediated apoptosis requires inositol hexakisphosphate kinase-2. Proc Natl Acad Sci U S A. 2010 Dec 7;107(49):20947-51.

Chakraborty A, Koldobskiy MA, Bello NT, Maxwell M, Potter JJ, Juluri KR, Maag D, Kim S, Huang AS, Dailey MJ, Saleh M, Snowman AM, Moran TH, Mezey E, Snyder SH. Inositol pyrophosphates inhibit Akt signaling, thereby regulating insulin sensitivity and weight gain. Cell. 2010 Dec 10;143(6):897-910.

Kornberg MD, Sen N, Hara MR, Juluri KR, Nguyen JV, Snowman AM, Law L, Hester LD, Snyder SH. GAPDH mediates nitrosylation of nuclear proteins. Nat Cell Biol. 2010 Nov;12(11):1094-100. Epub 2010 Oct 24. PubMed PMID: 20972425; PubMed Central PMCID: PMC2972384.

Wei X, Prickett TD, Viloria CG, Molinolo A, Lin JC, Cardenas-Navia I, Cruz P; NISC Comparative Sequencing Program, Rosenberg SA, Davies MA, Gershenwald JE, López-Otín C, Samuels Y. Mutational and functional analysis reveals ADAMTS18 metalloproteinase as a novel driver in melanoma. Mol Cancer Res. 2010 Nov;8(11):1513-25. Epub 2010 Oct 13. PubMed PMID: 21047771; PubMed Central PMCID: PMC3058631.

Parsons DW, Li M, Zhang X, Jones S, Leary RJ, Lin JC, Boca SM, Carter H, Samayoa J, Bettegowda C, Gallia GL, Jallo GI, Binder ZA, Nikolsky Y, Hartigan J, Smith DR, Gerhard DS, Fults DW, VandenBerg S, Berger MS, Marie SK, Shinjo SM, Clara C, Phillips PC, Minturn JE, Biegel JA, Judkins AR, Resnick AC, Storm PB, Curran T, He Y, Rasheed BA, Friedman HS, Keir ST, McLendon R, Northcott PA, Taylor MD, Burger PC, Riggins GJ, Karchin R, Parmigiani G, Bigner DD, Yan H, Papadopoulos N, Vogelstein B, Kinzler KW, Velculescu VE. The genetic landscape of the childhood cancer medulloblastoma. Science. 2011 Jan 28;331(6016):435-9. Epub 2010 Dec 16. PubMed PMID: 21163964; PubMed Central PMCID: PMC3110744.

Cárdenas-Navia LI, Cruz P, Lin JC; NISC Comparative Sequencing Program, Rosenberg SA, Samuels Y. Novel somatic mutations in heterotrimeric G proteins in melanoma. Cancer Biol Ther. 2010 Jul;10(1):33-7. PubMed PMID: 20424519; PubMed Central PMCID: PMC3040832.

Lin JC. Protein microarrays for cancer diagnostics and therapy. Med Princ Pract. 2010;19(4):247-54. Epub 2010 May 26. Review. PubMed PMID: 20516699.

Lin J, Xie Z, Zhu H, Qian J. Understanding protein phosphorylation on a systems level. Brief Funct Genomics. 2010 Jan;9(1):32-42. Epub 2010 Jan 7. Review. PubMed PMID: 20056723; PubMed Central PMCID: PMC3096446.

Link TM, Park U, Vonakis BM, Raben DM, Soloski MJ, Caterina MJ. TRPV2 has a pivotal role in macrophage particle binding and phagocytosis. Nat Immunol. 2010 Mar;11(3):232-9. Epub 2010 Jan 31. PubMed PMID: 20118928; PubMed Central PMCID: PMC2840267.

Long CM*, Muja N*, Bulte JWM (2010) Cell Voyeurism using Magnetic Resonance Imaging. Molecular Imaging: Principles and Practice. BPR Publishers. *co-first author.

Gabelli SB, Mandelker D, Schmidt-Kittler O, Vogelstein B, Amzel LM. Somatic mutations in PI3Kalpha: structural basis for enzyme activation and drug design. Biochim Biophys Acta. 2010 Mar;1804(3):533-40. Epub 2009 Dec 2. Review. PubMed PMID: 19962457; PubMed Central PMCID: PMC2821964.

Gabelli SB, Huang CH, Mandelker D, Schmidt-Kittler O, Vogelstein B, Amzel LM. Structural effects of oncogenic PI3Kα mutations. Curr Top Microbiol Immunol. 2010;347:43-53. Review. PubMed PMID: 20593314.

Gabelli SB, Mandelker D, Schmidt-Kittler O, Vogelstein B, Amzel LM. Somatic mutations in PI3Kalpha: structural basis for enzyme activation and drug design. Biochim Biophys Acta. 2010 Mar;1804(3):533-40. Epub 2009 Dec 2. Review. PubMed PMID: 19962457; PubMed Central PMCID: PMC2821964.

Subramaniam S, Mealer RG, Sixt KM, Barrow RK, Usiello A, Snyder SH. Rhes, a physiologic regulator of sumoylation, enhances cross-sumoylation between the basic sumoylation enzymes E1 and Ubc9. J Biol Chem. 2010 Jul 2;285(27):20428-32. Epub 2010 Apr 27. PubMed PMID: 20424159; PubMed Central PMCID: PMC2898300.

Wang Z, Udeshi ND, O’Malley M, Shabanowitz J, Hunt DF, Hart GW. Enrichment and site mapping of O-linked N-acetylglucosamine by a combination of chemical/enzymatic tagging, photochemical cleavage, and electron transfer dissociation mass spectrometry. Mol Cell Proteomics. 2010 Jan;9(1):153-60. Epub 2009 Aug 19. PubMed PMID: 19692427; PubMed Central PMCID: PMC2808261.

Basu AC, Tsai GE, Ma CL, Ehmsen JT, Mustafa AK, Han L, Jiang ZI, Benneyworth MA, Froimowitz MP, Lange N, Snyder SH, Bergeron R, Coyle JT. Targeted disruption of serine racemase affects glutamatergic neurotransmission and behavior. Mol Psychiatry. 2009 Jul;14(7):719-27. Epub 2008 Dec 9. Erratum in: Mol Psychiatry.2010 Nov;15(11):1122. PubMed PMID: 19065142; PubMed Central PMCID: PMC2786989.

Mustafa AK, Ahmad AS, Zeynalov E, Gazi SK, Sikka G, Ehmsen JT, Barrow RK, Coyle JT, Snyder SH, Doré S. Serine racemase deletion protects against cerebral ischemia and excitotoxicity. J Neurosci. 2010 Jan 27;30 (4):1413-6. PubMed PMID: 20107067; PubMed Central PMCID: PMC2841469.

Liu, J.O., Nacev, B.A., Xu, J., and Bhat, S. 2009. It takes two binding sites for calcineurin and NFAT to tango. Mol. Cell 33:676-678. PMID:19328062.

Shim JS, Matsui Y, Bhat S, Nacev BA, Xu J, Bhang HE, Dhara S, Han KC, Chong CR, Pomper MG, So A, Liu JO. Effect of nitroxoline on angiogenesis and growth of human bladder cancer. J Natl Cancer Inst. 2010 Dec 15;102(24):1855-73. Epub 2010 Nov 18. PubMed PMID: 21088277; PubMed Central PMCID: PMC3001967.

Shi, W., Nacev, B.A., Bhat, S., Liu, J.O. Impact of absolute stereochemistry on the antiangiogenic and antifungal activities of itraconazole (2010) ACS Medicinal Chemistry Letters, 1 (4), pp. 155-159.

Xiao Q, Zhang F, Nacev BA, Liu JO, Pei D. Protein N-terminal processing: substrate specificity of Escherichia coli and human methionine aminopeptidases. Biochemistry. 2010 Jul 6;49(26):5588-99. PubMed PMID: 20521764; PubMed Central PMCID: PMC2906754.

Narayan A, Lee AS, Kuo GP, Powe N, Kim HS. Uterine artery embolization versus abdominal myomectomy: a long-term clinical outcome comparison. J Vasc Interv Radiol. 2010 Jul;21(7):1011-7. Epub 2010 May 31. PubMed PMID: 20570178; PubMed Central PMCID: PMC2900435.

Jones MB, Chu CH, Pendleton JC, Betenbaugh MJ, Shiloach J, Baljinnyam B, Rubin JS, Shamblott MJ. Proliferation and pluripotency of human embryonic stem cells maintained on type I collagen. Stem Cells Dev. 2010 Dec;19(12):1923-35. Epub 2010 Oct 12. PubMed PMID: 20367282.

Zink MC, Brice AK, Kelly KM, Queen SE, Gama L, Li M, Adams RJ, Bartizal C, Varrone J, Rabi SA, Graham DR, Tarwater PM, Mankowski JL, Clements JE. Simian immunodeficiency virus-infected macaques treated with highly active antiretroviral therapy have reduced central nervous system viral replication and inflammation but persistence of viral DNA. J Infect Dis. 2010 Jul 1;202(1):161-70. PubMed PMID: 20497048; PubMed Central PMCID: PMC2880623.

Rabi SA, O’Connell KA, Nikolaeva D, Bailey JR, Jilek BL, Shen L, Page KR, Siliciano RF, Blankson JN. Unstimulated primary CD4+ T cells from HIV-1-positive elite suppressors are fully susceptible to HIV-1 entry and productive infection. J Virol. 2011 Jan;85(2):979-86. Epub 2010 Nov 10. PubMed PMID: 21068257; PubMed Central PMCID: PMC3020020.

Raghavan S, Desai RA, Kwon Y, Mrksich M, Chen CS. Micropatterned dynamically adhesive substrates for cell migration. Langmuir. 2010 Nov 16;26(22):17733-8. Epub 2010 Oct 1. PubMed PMID: 20886900.

Raghavan S, Shen CJ, Desai RA, Sniadecki NJ, Nelson CM, Chen CS. Decoupling diffusional from dimensional control of signaling in 3D culture reveals a role for myosin in tubulogenesis. J Cell Sci. 2010 Sep 1;123(Pt 17):2877-83. Epub 2010 Aug 3. PubMed PMID: 20682635; PubMed Central PMCID: PMC2923566.

Raghavan S, Nelson CM, Baranski JD, Lim E, Chen CS. Geometrically controlled endothelial tubulogenesis in micropatterned gels. Tissue Eng Part A. 2010 Jul;16(7):2255-63. PubMed PMID: 20180698; PubMed Central PMCID: PMC2947948.

Schreck KC, Taylor P, Marchionni L, Gopalakrishnan V, Bar EE, Gaiano N, Eberhart CG. The Notch target Hes1 directly modulates Gli1 expression and Hedgehog signaling: a potential mechanism of therapeutic resistance. Clin Cancer Res. 2010 Dec 15;16(24):6060-70. PubMed PMID: 21169257; PubMed Central PMCID: PMC3059501.

Silver DL, Watkins-Chow DE, Schreck KC, Pierfelice TJ, Larson DM, Burnetti AJ, Liaw HJ, Myung K, Walsh CA, Gaiano N, Pavan WJ. The exon junction complex component Magoh controls brain size by regulating neural stem cell division. Nat Neurosci. 2010 May;13(5):551-8. Epub 2010 Apr 4. PubMed PMID: 20364144; PubMed Central PMCID: PMC2860667.

Werner JK Jr, Speed T, Bhandari R. Protein pyrophosphorylation by diphosphoinositol pentakisphosphate (InsP7). Methods Mol Biol. 2010;645:87-102. PubMed PMID: 20645183.

Churchland MM, Yu BM, Cunningham JP, Sugrue LP, Cohen MR, Corrado GS, Newsome WT, Clark AM, Hosseini P, Scott BB, Bradley DC, Smith MA, Kohn A, Movshon JA, Armstrong KM, Moore T, Chang SW, Snyder LH, Lisberger SG, Priebe NJ, Finn IM, Ferster D, Ryu SI, Santhanam G, Sahani M, Shenoy KV. Stimulus onset quenches neural variability: a widespread cortical phenomenon. Nat Neurosci. 2010 Mar;13 (3):369-78. Epub 2010 Feb 21. PubMed PMID: 20173745; PubMed Central PMCID: PMC2828350.

Bhise NS, Gray RS, Sunshine JC, Htet S, Ewald AJ, Green JJ. The relationship between terminal functionalization and molecular weight of a gene deliverypolymer and transfection efficacy in mammary epithelial 2-D cultures and 3-D organotypic cultures. Biomaterials. 2010 Nov;31(31):8088-96. Epub 2010 Jul 31. PubMed PMID: 20674001.

Tadross MR, Yue DT. Systematic mapping of the state dependence of voltage- and Ca2+-dependent inactivation using simple open-channel measurements. J Gen Physiol. 2010 Mar;135(3):217-27. Epub 2010 Feb 8. PubMed PMID: 20142518; PubMed Central PMCID: PMC2828911.

Tadross MR, Ben Johny M, Yue DT. Molecular endpoints of Ca2+/calmodulin- and voltage-dependent inactivation of Ca(v)1.3 channels. J Gen Physiol. 2010 Mar;135(3):197-215. Epub 2010 Feb 8. PubMed PMID: 20142517; PubMed Central PMCID: PMC2828906.

Bellows ML, Taylor MS, Cole PA, Shen L, Siliciano RF, Fung HK, Floudas CA. Discovery of entry inhibitors for HIV-1 via a new de novo protein design framework. Biophys J. 2010 Nov 17;99(10):3445-53. PubMed PMID: 21081094; PubMed Central PMCID: PMC2980751.

Barnett BP, Hwang Y, Taylor MS, Kirchner H, Pfluger PT, Bernard V, Lin YY, Bowers EM, Mukherjee C, Song WJ, Longo PA, Leahy DJ, Hussain MA, Tschöp MH, Boeke JD, Cole PA. Glucose and weight control in mice with a designed ghrelin O-acyltransferase inhibitor. Science. 2010 Dec 17;330(6011):1689-92. Epub 2010 Nov 18. PubMed PMID: 21097901; PubMed Central PMCID: PMC3068526.

Lauring J, Cosgrove DP, Fontana S, Gustin JP, Konishi H, Abukhdeir AM, Garay JP, Mohseni M, Wang GM, Higgins MJ, Gorkin D, Reis M, Vogelstein B, Polyak K, Cowherd M, Buckhaults PJ, Park BH. Knock in of the AKT1 E17K mutation in human breast epithelial cells does not recapitulate oncogenic PIK3CA mutations. Oncogene. 2010 Apr 22;29(16):2337-45. Epub 2010 Jan 25. PubMed PMID: 20101210; PubMed Central PMCID: PMC3042798.

Wang GM and Park BH. The Role of PIK3CA Mutations as a Predictor of Outcomes and a Therapeutic Target. Current Breast Cancer Reports, 2(4):167-173, 2010. DOI: 10.1007/s12609-010-0022-4.

Le DT, Ladle BH, Lee T, Weiss V, Yao X, Leubner A, Armstrong TD, Jaffee EM. CD8(+) Foxp3(+) tumor infiltrating lymphocytes accumulate in the context of an effective anti-tumor response. Int J Cancer. 2011 Aug 1;129(3):636-47. doi: 10.1002/ijc.25693. Epub 2010 Nov 12. PubMed PMID: 20857491; PubMed Central PMCID: PMC3064958.

Koldobskiy MA, Chakraborty A, Werner JK Jr, Snowman AM, Juluri KR, Vandiver MS, Kim S, Heletz S, Snyder SH. p53-mediated apoptosis requires inositol hexakisphosphate kinase-2. Proc Natl Acad Sci U S A. 2010 Dec 7;107(49):20947-51. Epub 2010 Nov 15. PubMed PMID: 21078964; PubMed Central PMCID: PMC3000257.

Werner JK Jr, Speed T, Bhandari R. Protein pyrophosphorylation by diphosphoinositol pentakisphosphate (InsP7). Methods Mol Biol. 2010;645:87-102. PubMed PMID: 20645183.

Guo T, Mandai K, Condie BG, Wickramasinghe SR, Capecchi MR, Ginty DD. An evolving NGF-Hoxd1 signaling pathway mediates development of divergent neural circuits in vertebrates. Nat Neurosci. 2011 Jan;14(1):31-6. Epub 2010 Dec 12. PubMed PMID: 21151121.

Xu R, Sciubba DM, Gokaslan ZL, Bydon A. Metastasis to the occipitocervical junction: A case report and review of the literature. Surg Neurol Int. 2010 May 31;1:16. PubMed PMID: 20657697; PubMed Central PMCID: PMC2908354.

Parker SL, Xu R, McGirt MJ, Witham TF, Long DM, Bydon A. Long-term back pain after a single-level discectomy for radiculopathy: incidence and health care cost analysis. J Neurosurg Spine. 2010 Feb;12(2):178-82.PubMed PMID: 20121353.

Bydon A, Xu R, Parker SL, McGirt MJ, Bydon M, Gokaslan ZL, Witham TF. Recurrent back and leg pain and cyst reformation after surgical resection of spinal synovial cysts: systematic review of reported postoperative outcomes. Spine J. 2010 Sep;10(9):820-6. Epub 2010 May 20. Review. PubMed PMID: 20488765.

Xu R, McGirt MJ, Parker SL, Bydon M, Olivi A, Wolinsky JP, Witham TF, Gokaslan ZL, Bydon A. Factors associated with recurrent back pain and cyst recurrence after surgical resection of one hundred ninety-five spinal synovial cysts: analysis of one hundred sixty-seven consecutive cases. Spine (Phila Pa 1976). 2010 May 1;35(10):1044-53. PubMed PMID: 20173680.

Bydon A, Xu R, Conte JV, Gokaslan ZL, Brinker JA, Witham TF, Yassari R. Surgical mystery: where is the missing pituitary rongeur tip? Spine (Phila Pa 1976). 2010 Aug 1;35(17):E867-72. PubMed PMID: 20628330.

Lotfy M, Xu R, Sakr S, Ayoub B, Bydon A. Reconstruction of skull base defects in sphenoid wing dysplasia via titanium mesh. Clin Neurol Neurosurg. 2010 Dec;112(10):909-14.

Xu R, McGirt MJ, Sutter EG, Sciubba DM, Wolinsky JP, Witham TF, Gokaslan ZL, Bydon A. Biomechanical comparison between C-7 lateral mass and pedicle screws in subaxial cervical constructs. Presented at the 2009 Joint Spine Meeting. Laboratory investigation. J Neurosurg Spine. 2010 Dec;13(6):688-94. PubMed PMID: 21121745.

Daniel J. Zabransky*, Heath A. Smith**, Christopher J. Thoburn*, Marianna Zahurak*, Daniel Keizman*, Michael Carducci*, Mario A. Eisenberger*, Douglas G. McNeel**, Charles G. Drake* and Emmanuel S. Antonarakis*; Lenalidomide Modulates IL-8 and Anti-Prostate Antibody Levels in Men with Biochemically Recurrent Prostate Cancer ; In press.

2009 (MD-PhD student bolded/italics)

Gamper CJ, Agoston AT, Nelson WG, Powell JD. Identification of DNA methyltransferase 3a as a T cell receptor-induced regulator of Th1 and Th2 differentiation. J Immunol. 2009 Aug 15;183 (4):2267-76. Epub 2009 Jul 22. PubMed PMID: 19625655; PubMed Central PMCID: PMC2818975.

Bailey JR, Brennan TP, O’Connell KA, Siliciano RF, Blankson JN. Evidence of CD8+ T-cell-mediated selective pressure on human immunodeficiency virus type 1 nef in HLA-B*57+ elite suppressors. J Virol. 2009 Jan;83(1):88-97. Epub 2008 Oct 22. PubMed PMID: 18945771; PubMed Central PMCID: PMC2612327.

O’Connell KA, Bailey JR, Blankson JN. Elucidating the elite: mechanisms of control in HIV-1 infection. Trends Pharmacol Sci. 2009 Dec;30(12):631-7. Review. PubMed PMID: 19837464.

Lassen KG, Lobritz MA, Bailey JR, Johnston S, Nguyen S, Lee B, Chou T, Siliciano RF, Markowitz M, Arts EJ. Elite suppressor-derived HIV-1 envelope glycoproteins exhibit reduced entry efficiency and kinetics. PLoS Pathog. 2009 Apr;5(4):e1000377. Epub 2009 Apr 10. PubMed PMID: 19360131; PubMed Central PMCID:PMC2661022.

Barnett BP, Sheth S, Ali SZ. Cytopathologic analysis of paratracheal masses: a study of 737 cases with clinicoradiologic correlation. Acta Cytol. 2009 Nov-Dec;53(6):672-8. PubMed PMID: 20014557.

Barnett BP, Hughes AH, Lin S, Arepally A, Gailloud PH. In vitro assessment of EmboGel and UltraGel radiopaque hydrogels for the endovascular treatment of aneurysms. J Vasc Interv Radiol. 2009 Apr;20(4):507 -12. PubMed PMID: 19328428.

Barnett BP, Qazi U, Perler BA, Malas MB. Novel approach to a type I endoleak following a hybrid repair of an arch aortic aneurysm. Vasc Endovascular Surg. 2009 Aug-Sep;43(4):389-92. Epub 2009 Jul 23. PubMed PMID: 19628521.

Leong TG, Randall CL, Benson BR, Bassik N, Stern GM, Gracias DH. Tetherless thermobiochemically actuated microgrippers. Proc Natl Acad Sci U S A. 2009 Jan 20;106(3):703-8. Epub 2009 Jan 12. PubMed PMID: 19139411; PubMed Central PMCID: PMC2630075.

Bassik N, Stern GM, Gracias DH. Microassembly based on hands free origami with bidirectional curvature. Appl Phys Lett. 2009 Aug 31;95(9):91901. PubMed PMID: 19787072; PubMed Central PMCID: PMC2752473.

P. Tyagi, N. Bassik, T. G. Leong, J. H. Cho, B. R. Benson and D. H. Gracias,Self-assembly based on chromium / copper bilayers, IEEE/ASME Journal of Microelectromechancial Systems (JMEMS) (2009) In Press

Burger IM, Kass NE. Screening in the dark: ethical considerations of providing screening tests to individuals when evidence is insufficient to support screening populations. Am J Bioeth. 2009 Apr;9(4):3-14 PubMed PMID: 19326299; PubMed Central PMCID: PMC3115566.

Burger IM, Kass NE. Response to open peer commentaries for “Ethical considerations of providing screening tests to individuals when evidence is insufficient to support screening populations”. Am J Bioeth. 2009 Apr;9(4):W1-2. PubMed PMID: 19326298.

Elmouelhi N, Aich U, Paruchuri VD, Meledeo MA, Campbell CT, Wang JJ, Srinivas R, Khanna HS, Yarema KJ. Hexosamine template. A platform for modulating gene expression and for sugar-based drug discovery. J Med Chem. 2009 Apr 23;52(8):2515-30. PubMed PMID: 19326913; PubMed Central PMCID: PMC2721157.

Cheong R, Wang CJ, Levchenko A. High content cell screening in a microfluidic device. Mol Cell Proteomics. 2009 Mar;8(3):433-42. Epub 2008 Oct 24. PubMed PMID:18953019; PubMed Central PMCID: PMC2649807.

Cheong R, Wang CJ, Levchenko A. Using a microfluidic device for high-content analysis of cell signaling. Sci Signal. 2009 Jun 16;2(75):pl2. Review. PubMed PMID: 19531802.

Kim DH, Lipke EA, Kim P, Cheong R, Thompson S, Delannoy M, Suh KY, Tung L,Levchenko A. Nanoscale cues regulate the structure and function of macroscopic cardiac tissue constructs. Proc Natl Acad Sci U S A. 2010 Jan 12;107(2):565-70. Epub 2009 Dec 16. PubMed PMID: 20018748; PubMed Central PMCID: PMC2818944.

Allen G, Simpkins CE, Segev D, Warren D, King K, Taube J, Locke J, Baldwin W, Haas M, Chivukula R, Montgomery RA. Rapid accomodation of an A1 renal allograft 2009;162:35-46. Epub 2008 Oct 31. PubMed PMID: 19001812.

Soderlund KA, Chivukula RR, Russell SD, Conte JV, Mudd JO, Halushka MK. Prognostic value of left ventricular apical tissue removed for HeartMate II left ventricular assist device placement. Cardiovasc Pathol. 2009 Jul-Aug;18(4):217-22. Epub 2008 Aug 15. PubMed PMID: 18706833.

Kota J, Chivukula RR, O’Donnell KA, Wentzel EA, Montgomery CL, Hwang HW, Chang TC, Vivekanandan P, Torbenson M, Clark KR, Mendell JR, Mendell JT. Therapeutic microRNA delivery suppresses tumorigenesis in a murine liver cancer model. Cell. 2009 Jun 12;137(6):1005-17. PubMed PMID: 19524505.

Chivukula RR, Mendell JT. Abate and switch: miR-145 in stem cell differentiation. Cell. 2009 May 15;137(4):606-8. PubMed PMID: 19450510.

Chang TC, Zeitels LR, Hwang HW, Chivukula RR, Wentzel EA, Dews M, Jung J, Gao P, Dang CV, Beer MA, Thomas-Tikhonenko A, Mendell JT. Lin-28B transactivation is necessary for Myc-mediated let-7 repression and proliferation. Proc Natl Acad Sci U S A. 2009 Mar 3;106(9):3384-9. Epub 2009 Feb 11. PubMed PMID: 19211792; PubMed  Central PMCID: PMC2651245.

Christman AL, Vannorsdall TD, Pearlson GD, Hill-Briggs F, Schretlen DJ. Cranial volume, mild cognitive deficits, and functional limitations associated with diabetes in a community sample. Arch Clin Neuropsychol. 2010 Feb;25(1):49-59. Epub 2009 Nov 25. PubMed PMID: 19942595; PubMed Central PMCID: PMC2809552.

Nachega JB, Hislop M, Nguyen H, Dowdy DW, Chaisson RE, Regensberg L, Cotton M, Maartens G. Antiretroviral therapy adherence, virologic and immunologic outcomes in adolescents compared with adults in southern Africa. J Acquir Immune Defic Syndr. 2009 May 1;51(1):65-71. PubMed PMID: 19282780; PubMed Central PMCID: PMC2674125.

Dowdy DW, Chaisson RE. The persistence of tuberculosis in the age of DOTS: reassessing the effect of case detection. Bull World Health Organ. 2009 Apr;87(4):296-304. PubMed PMID: 19551238; PubMed Central PMCID: PMC2672581.

Basu AC, Tsai GE, Ma CL, Ehmsen JT, Mustafa AK, Han L, Jiang ZI, Benneyworth MA, Froimowitz MP, Lange N, Snyder SH, Bergeron R, Coyle JT. Targeted disruption of serine racemase affects glutamatergic neurotransmission and behavior. Mol Psychiatry. 2009 Jul;14(7):719-27. Epub 2008 Dec 9. Erratum in: Mol Psychiatry. 2010 Nov;15(11):1122. PubMed PMID: 19065142; PubMed Central PMCID: PMC2786989.

Sen N, Hara MR, Ahmad AS, Cascio MB, Kamiya A, Ehmsen JT, Aggrawal N, Hester L, Doré S, Snyder SH, Sawa A. GOSPEL: A Neuroprotective Protein that Binds to GAPDH upon S-Nitrosylation. Neuron 63(1): 81-91 (2009), PMID:19607794.

Mustafa AK, van Rossum DB, Patterson RL, Maag D, Ehmsen JT, Gazi SK, Chakraborty A, Barrow RK, Amzel LM, Snyder SH. Glutamatergic regulation of serine racemase via reversal of PIP2 inhibition. Proc Natl Acad Sci USA 106(8): 2921-6 (2009), PMID:19193859.

Mustafa AK, Gadalla MM, Sen N, Kim S, Mu W, Gazi SK, Barrow RK, Yang G, Wang R, Snyder SH. H2S signals through protein S-sulfhydration. Sci Signal. 2009 Nov 10;2(96):ra72. PubMed PMID: 19903941; PubMed Central PMCID: PMC2998899.

Mustafa AK, Gadalla MM, Snyder SH. Signaling by gasotransmitters. Sci Signal. 2009 Apr 28;2(68):re2. Review. PubMed PMID: 19401594; PubMed Central PMCID: PMC2744355.

Frazier JL, Goodwin CR, Ahn ES, Jallo GI. A review on the management of epilepsy associated with hypothalamic hamartomas. Childs Nerv Syst. 2009 Apr;25(4):423-32. Epub 2009 Jan 20. Review. PubMed PMID: 19153751.

Lal B, Goodwin CR, Sang Y, Foss CA, Cornet K, Muzamil S, Pomper MG, Kim J, Laterra J. EGFRvIII and c-Met pathway inhibitors synergize against PTEN-null/EGFRvIII+ glioblastoma xenografts. Mol Cancer Ther. 2009 Jul;8(7):1751-60. Epub 2009 Jul 7. PubMed PMID: 19584231; PubMed Central PMCID: PMC2846399.

Li Y, Goodwin CR, Rosen EM, Laterra J, Xia S. Camptothecin and Fas receptor agonists synergistically induce medulloblastoma cell death: ROS-dependent mechanisms. Anticancer Drugs.(2009) Oct;20(9):770-78, PMID:19633536.

Nathan H, Choti M, Wolfgang CL, Goodwin CR, Seth AK, Winter JM, Barish EH, Schulick RD, Pawlik TM, Cameron JL. (2009) Risk Factors for Pancreatic Leak Following Distal ancreatectomy. Annals of Surgery (2009) Aug;250 (2):277-81, PMID:19638926.

Yen HR, Harris TJ, Wada S, Grosso JF, Getnet D, Goldberg MV, Liang KL, Bruno TC, Pyle KJ, Chan SL, Anders RA, Trimble CL, Adler AJ, Lin TY, Pardoll DM, Huang CT, Drake CG. Tc17 CD8 T cells: functional plasticity and subset diversity. J Immunol. 2009 Dec 1;183(11):7161-8. Epub 2009 Nov 16. PubMed PMID: 19917680; PubMed Central PMCID: PMC3082359.

Wada S, Yoshimura K, Hipkiss EL, Harris TJ, Yen HR, Goldberg MV, Grosso JF, Getnet D, Demarzo AM, Netto GJ, Anders R, Pardoll DM, Drake CG. Cyclophosphamide augments antitumor immunity: studies in an autochthonous prostate cancer model. Cancer Res. 2009 May 15;69(10):4309-18. Epub 2009 May 12. PubMed PMID: 19435909; PubMed Central PMCID: PMC3084614.

Getnet D, Maris CH, Hipkiss EL, Grosso JF, Harris TJ, Yen HR, Bruno TC, Wada S, Adler A, Georgantas RW, Jie C, Goldberg MV, Pardoll DM, Drake CG. Tumor recognition and self-recognition induce distinct transcriptional profiles in antigen-specific CD4 T cells. J Immunol. 2009 Apr 15;182(8):4675-85. PubMed PMID: 19342643; PubMed Central PMCID: PMC3082355.

Healy ZR, Dinkova-Kostova AT, Wehage SL, Thompson RE, Fahey JW, Talalay P. Precise determination of the erythema response of human skin to ultraviolet radiation and quantification of effects of protectors. Photodermatol Photoimmunol Photomed. 2009 Feb;25(1):45-50. PubMed PMID: 19152516.

Howard DL, Strobino D, Sherman SG, Crum RM. Timing of incarceration during pregnancy and birth outcomes: exploring racial differences. Matern Child Health J. 2009 Jul;13(4):457-66. Epub 2008 Jun 17. PubMed PMID: 18561009.

Parmigiani G, Boca S, Lin J, Kinzler KW, Velculescu V, Vogelstein B. Design and analysis issues in genome-wide somatic mutation studies of cancer. Genomics. 2009 Jan;93(1):17-21. Epub 2008 Aug 23. Review. PubMed PMID: 18692126; PubMed Central PMCID: PMC2820387.

Prickett TD, Agrawal NS, Wei X, Yates KE, Lin JC, Wunderlich JR, Cronin JC, Cruz P, Rosenberg SA, Samuels Y. Analysis of the tyrosine kinome in melanoma reveals recurrent mutations in ERBB4. Nat Genet. 2009 Oct;41(10):1127-32. Epub 2009 Aug 30. PubMed PMID: 19718025; PubMed Central PMCID: PMC2897709.

Hu S, Xie Z, Onishi A, Yu X, Jiang L, Lin J, Rho HS, Woodard C, Wang H, Jeong JS, Long S, He X, Wade H, Blackshaw S, Qian J, Zhu H. Profiling the human protein-DNA interactome reveals ERK2 as a transcriptional repressor of interferon signaling. Cell. 2009 Oct 30;139(3):610-22. PubMed PMID: 19879846; PubMed Central PMCID: PMC2774939.

Blackford A, Serrano OK, Wolfgang CL, Parmigiani G, Jones S, Zhang X, Parsons DW, Lin JC, Leary RJ, Eshleman JR, Goggins M, Jaffee EM, Iacobuzio-Donahue CA,Maitra A, Cameron JL, Olino K, Schulick R, Winter J, Herman JM, Laheru D, Klein AP, Vogelstein B, Kinzler KW, Velculescu VE, Hruban RH. SMAD4 gene mutations are associated with poor prognosis in pancreatic cancer. Clin Cancer Res. 2009 Jul 15;15(14):4674-9. Epub 2009 Jul 7. PubMed PMID: 19584151; PubMed Central PMCID: PMC2819274.

Wan J, Lin J, Zack DJ, Qian J. Relating periodicity of nucleosome organization and gene regulation. Bioinformatics. 2009 Jul 15;25(14):1782-8. Epub 2009 May 15. PubMed PMID: 19447785; PubMed Central PMCID: PMC2705233.

Duncan CG, Leary RJ, Lin JC, Cummins J, Di C, Schaefer CF, Wang TL, Riggins GJ, Edwards J, Bigner D, Kopelovich L, Vogelstein B, Kinzler KW, Velculescu VE, Yan H. Identification of microbial DNA in human cancer. BMC Med Genomics. 2009 May 8;2:22. PubMed PMID: 19426505; PubMed Central PMCID: PMC2685141.

Cronin JC, Wunderlich J, Loftus SK, Prickett TD, Wei X, Ridd K, Vemula S, Burrell AS, Agrawal NS, Lin JC, Banister CE, Buckhaults P, Rosenberg SA, Bastian BC, Pavan WJ, Samuels Y. Frequent mutations in the MITF pathway in melanoma. Pigment Cell Melanoma Res. 2009 Aug;22(4):435-44. Epub 2009 Apr 29. PubMed PMID: 19422606; PubMed Central PMCID: PMC2728363.

Palavalli LH, Prickett TD, Wunderlich JR, Wei X, Burrell AS, Porter-Gill P, Davis S, Wang C, Cronin JC, Agrawal NS, Lin JC, Westbroek W, Hoogstraten-Miller S, Molinolo AA, Fetsch P, Filie AC, O’Connell MP, Banister CE, Howard JD, Buckhaults P, Weeraratna AT, Brody LC, Rosenberg SA, Samuels Y. Analysis of the matrix metalloproteinase family reveals that MMP8 is often mutated in melanoma. Nat Genet. 2009 May;41 (5):518-20. Epub 2009 Mar 29. PubMed PMID: 19330028; PubMed Central PMCID: PMC2748394.

Blackford A, Parmigiani G, Kensler TW, Wolfgang C, Jones S, Zhang X, Parsons DW, Lin JC, Leary RJ, Eshleman JR, Goggins M, Jaffee EM, Iacobuzio-Donahue CA, Maitra A, Klein A, Cameron JL, Olino K, Schulick R, Winter J, Vogelstein B, Velculescu VE, Kinzler KW, Hruban RH. Genetic mutations associated with cigarette smoking in pancreatic cancer. Cancer Res. 2009 Apr 15;69(8):3681-8. Epub 2009 Apr 7. PubMed PMID: 19351817; PubMed Central PMCID: PMC2669837.

Jones S, Hruban RH, Kamiyama M, Borges M, Zhang X, Parsons DW, Lin JC, Palmisano E, Brune K, Jaffee EM, Iacobuzio-Donahue CA, Maitra A, Parmigiani G, Kern SE, Velculescu VE, Kinzler KW, Vogelstein B, Eshleman JR, Goggins M, Klein AP. Exomic sequencing identifies PALB2 as a pancreatic cancer susceptibility gene. Science. 2009 Apr 10;324(5924):217. Epub 2009 Mar 5. PubMed PMID: 19264984; PubMed Central PMCID: PMC2684332.

Long CM, Bulte JW. In vivo tracking of cellular therapeutics using magnetic resonance imaging. Expert Opin Biol Ther. 2009 Mar;9(3):293-306. Review. PubMed PMID: 19216619; PubMed Central PMCID: PMC3079243.

Long CM, van Laarhoven HW, Bulte JW, Levitsky HI. Magnetovaccination as a novel method to assess and quantify dendritic cell tumor antigen capture and delivery to lymph nodes. Cancer Res. 2009 Apr 1;69 (7):3180-7. Epub 2009 Mar 10. PubMed PMID: 19276358; PubMed Central PMCID: PMC3031988.

Gabelli SB, Mandelker D, Schmidt-Kittler O, Vogelstein B, Amzel LM. Somatic mutations in PI3Kalpha: structural basis for enzyme activation and drug design. Biochim Biophys Acta. 2010 Mar;1804(3):533-40. Epub 2009 Dec 2. Review. PubMed PMID: 19962457; PubMed Central PMCID: PMC2821964.

Mandelker D, Gabelli SB, Schmidt-Kittler O, Zhu J, Cheong I, Huang CH, Kinzler KW, Vogelstein B, Amzel LM. A frequent kinase domain mutation that changes the interaction between PI3Kalpha and the membrane. Proc Natl Acad Sci U S A. 2009 Oct 6;106(40):16996-7001. Epub 2009 Sep 23. PubMed PMID: 19805105; PubMed Central PMCID: PMC2761334.

Gabelli SB, Mandelker D, Schmidt-Kittler O, Vogelstein B, Amzel LM. Somatic mutations in PI3Kalpha: structural basis for enzyme activation and drug design. Biochim Biophys Acta. 2010 Mar;1804(3):533-40. Epub 2009 Dec 2. Review. PubMed PMID: 19962457; PubMed Central PMCID: PMC2821964.

Reti IM, Han S, Miskimon M, Rosen JB, Baraban JM. Nicotine and Delta(9)-tetrahydrocannabinol withdrawal induce Narp in the central nucleus of the amygdala. Synapse. 2009 Mar;63(3):252-5. PubMed PMID: 19084905; PubMed Central PMCID: PMC2628419.

Irizarry RA, Ladd-Acosta C, Wen B, Wu Z, Montano C, Onyango P, Cui H, Gabo K, Rongione M, Webster M, Ji H, Potash JB, Sabunciyan S, Feinberg AP. The human colon cancer methylome shows similar hypo- and hypermethylation at conserved tissue-specific CpG island shores. Nat Genet. 2009 Feb;41(2):178-86. Epub 2009 Jan 18. PubMed PMID: 19151715; PubMed Central PMCID: PMC2729128.

Wang Z, Udeshi ND, O’Malley M, Shabanowitz J, Hunt DF, Hart GW. Enrichment and site mapping of O-linked N-acetylglucosamine by a combination of chemical/enzymatic tagging, photochemical cleavage, and electron transfer dissociation mass spectrometry. Mol Cell Proteomics. 2010 Jan;9(1):153-60. Epub 2009 Aug 19. PubMed PMID: 19692427; PubMed Central PMCID: PMC2808261.

Basu AC, Tsai GE, Ma CL, Ehmsen JT, Mustafa AK, Han L, Jiang ZI, Benneyworth MA, Froimowitz MP, Lange N, Snyder SH, Bergeron R, Coyle JT. Targeted disruption of serine racemase affects glutamatergic neurotransmission and behavior. Mol Psychiatry. 2009 Jul;14(7):719-27. Epub 2008 Dec 9. Erratum in: Mol Psychiatry.2010 Nov;15(11):1122. PubMed PMID: 19065142; PubMed Central PMCID: PMC2786989.

Mustafa AK, Gadalla MM, Snyder SH. Signaling by gasotransmitters. Sci Signal. 2009 Apr 28;2(68):re2. Review. PubMed PMID: 19401594; PubMed Central PMCID: PMC2744355.

Mustafa AK, Gadalla MM, Sen N, Kim S, Mu W, Gazi SK, Barrow RK, Yang G, Wang R, Snyder SH. H2S signals through protein S-sulfhydration. Sci Signal. 2009 Nov 10;2(96):ra72. PubMed PMID: 19903941; PubMed Central PMCID: PMC2998899.

Mustafa, A.K., van Rossum, D.B., Patterson, R.L., Maag, D., Ehmsen, J.T., Gazi, S.K., Chakraborty, A., Barrow, R.K., Amzel, L.M. and Snyder, S.H., Glutamatergic Regulation of Serine Racemase via Reversal of PIP2 Inhibition, Proc. Natl. Acad. Sci. USA, 2009, 106(8), pp.2921-2926. PMID: 19193859.

Liu, J.O., Nacev, B.A., Xu, J., and Bhat, S. 2009. It takes two binding sites for calcineurin and NFAT to tango. Mol. Cell 33:676-678. PMID:19328062.

Armanios M, Alder JK, Parry EM, Karim B, Strong MA, Greider CW. Short telomeres are sufficient to cause the degenerative defects associated with aging. Am J Hum Genet. 2009 Dec;85(6):823-32. Epub . PubMed PMID: 19944403; PubMed Central PMCID: PMC2790562.

Pletneva M, Fan H, Park JJ, Radojcic V, Jie C, Yu Y, Chan C, Redwood A, Pardoll D, Housseau F. IFN-producing killer dendritic cells are antigen-presenting cells endowed with t-cell crosspriming capacity. Cancer Res. 2009 Aug 15;69(16):6607-14. PMID: 19679552.

Radojcic V, Bezak KB, Skarica M, Pletneva MA, Yoshimura K, Schulick RD, Luznik L. Cyclophosphamide resets dendritic cell homeostasis and enhances antitumor immunity through effects that extend beyond regulatory T cell elimination. Cancer Immunol Immunother. 2009 Jul 10. [Epub ahead of print] PMID: 19590872.

Dinoso JB, Rabi SA, Blankson JN, Gama L, Mankowski JL, Siliciano RF, Zink MC, Clements JE. A simian immunodeficiency virus-infected macaque model to study viral reservoirs that persist during highly active antiretroviral therapy. J Virol. 2009 Sep;83(18):9247-57. Epub 2009 Jul 1. PubMed PMID: 19570871; PubMed Central PMCID: PMC2738256.

Shen L, Rabi SA, Siliciano RF. A novel method for determining the inhibitory potential of anti-HIV drugs. Trends Pharmacol Sci. 2009 Dec;30(12):610-6. Review. PubMed PMID: 19837466.

Desai RA, Gao L, Raghavan S, Liu WF, Chen CS. Cell polarity triggered by cell-cell adhesion via Ecadherin. J. Cell Science 2009 Apr 1; 122(7):905-11, PMID:19258396.

Yun J, Rago C, Cheong I, Pagliarini R, Angenendt P, Rajagopalan H, Schmidt K, Willson JK, Markowitz S, Zhou S, Diaz LA Jr, Velculescu VE, Lengauer C, Kinzler KW, Vogelstein B, Papadopoulos N. Glucose deprivation contributes to the development of KRAS pathway mutations in tumor cells. Science. 2009 Sep 18;325(5947):1555-9. Epub 2009 Aug 6. PubMed PMID: 19661383; PubMed Central PMCID: PMC2820374.

Yan Y, Sabharwal P, Rao M, Sockanathan S. The antioxidant enzyme Prdx1 controls neuronal differentiation by thiol-redox-dependent activation of GDE2. Cell. 2009 Sep 18;138(6):1209-21. PubMed PMID: 19766572; PubMed Central PMCID: PMC2748999.

Schreck KC, Gaiano N. PML: a tumor suppressor essential for neocortical development. Nat Neurosci. 2009 Feb;12(2):108-10. Review. PubMed PMID: 19172164.

Brennan TP, Woods JO, Sedaghat AR, Siliciano JD, Siliciano RF, Wilke CO. Analysis of human immunodeficiency virus type 1 viremia and provirus in resting CD4+ T cells reveals a novel source of residual viremia in patients on antiretroviral therapy. J Virol. 2009 Sep;83(17):8470-81. Epub 2009 Jun 17. PubMed PMID: 19535437; PubMed Central PMCID: PMC2738142.

Sedaghat AR, Rastegar DA, O’Connell KA, Dinoso JB, Wilke CO, Blankson JN. T cell dynamics and the response to HAART in a cohort of HIV-1-infected elite suppressors. Clin Infect Dis. 2009 Dec 1;49(11):1763-6. PubMed PMID: 19857162; PubMed Central PMCID: PMC2783537.

Sedaghat AR, Siliciano RF, Wilke CO. Constraints on the dominant mechanism for HIV viral dynamics in patients on raltegravir. Antivir Ther. 2009;14(2):263-71. PubMed PMID: 19430101; PubMed Central PMCID: PMC2980788.

Park JS, Voitenko N, Petralia RS, Guan X, Xu JT, Steinberg JP, Takamiya K, Sotnik A, Kopach O, Huganir RL, Tao YX. Persistent inflammation induces GluR2 internalization via NMDA receptor-triggered PKC activation in dorsal horn neurons. J Neurosci. 2009 Mar 11;29(10):3206-19. PubMed PMID: 19279258; PubMed Central PMCID: PMC2664544.

Suber T, Rosen A. Apoptotic cell blebs: repositories of autoantigens and contributors to immune context. Arthritis Rheum. 2009 Aug;60(8):2216-9. PubMed PMID: 19644864.

Tadross MR, Park SA, Veeramani B, Yue DT. Robust approaches to quantitative ratiometric FRET imaging of CFP/YFP fluorophores under confocal microscopy. J Microsc. 2009 Jan;233(1):192-204. PubMed PMID: 19196425; PubMed Central PMCID: PMC2877369.

Gustin JP, Karakas B, Weiss MB, Abukhdeir AM, Lauring J, Garay JP, Cosgrove D, Tamaki A, Konishi H, Konishi Y, Mohseni M, Wang G, Rosen DM, Denmeade SR, Higgins MJ, Vitolo MI, Bachman KE, Park BH. Knockin of mutant PIK3CA activates multiple oncogenic pathways. Proc Natl Acad Sci U S A. 2009 Feb 24;106(8):2835-40. Epub 2009 Feb 5. PubMed PMID: 19196980; PubMed Central PMCID: PMC2636736.

McGirt MJ, Sutter EG, Xu R, Sciubba DM, Wolinsky JP, Witham TF, Gokaslan ZL, Bydon A. Biomechanical comparison of translaminar versus pedicle screws at T1 and T2 in long subaxial cervical constructs. Neurosurgery. 2009 Dec;65(6 Suppl):167-72; discussion 172. PubMed PMID: 19934991.

Hsieh PC, Xu R, Sciubba DM, McGirt MJ, Nelson C, Witham TF, Wolinksy JP, Gokaslan ZL. Long-term clinical outcomes following en bloc resections for sacral chordomas and chondrosarcomas: a series of twenty consecutive patients. Spine (Phila Pa 1976). 2009 Sep 15;34(20):2233-9. PubMed PMID: 19752710.

Xu R, Bydon M, Gokaslan ZL, Wolinsky JP, Witham TF, Bydon A. Epidural steroid injection resulting in epidural hematoma in a patient despite strict adherence to anticoagulation guidelines. J Neurosurg Spine. 2009 Sep;11(3):358-64. PubMed PMID: 19769520.

Xu R, Garcés-Ambrossi GL, McGirt MJ, Witham TF, Wolinsky JP, Bydon A, Gokaslan ZL, Sciubba DM. Thoracic vertebrectomy and spinal reconstruction via anterior, posterior, or combined approaches: clinical outcomes in 91 consecutive patients with metastatic spinal tumors. J Neurosurg Spine. 2009 Sep;11(3):272-84. PubMed PMID: 19769508.

Xu R, McGirt MJ, Sutter EG, Sciubba DM, Wolinsky JP, Witham TF, Gokaslan ZL, Bydon A. Biomechanical comparison between C-7 lateral mass and pedicle screws in subaxial cervical constructs. Presented at the 2009 Joint Spine Meeting. Laboratory investigation. J Neurosurg Spine. 2010 Dec;13(6):688-94. PubMed PMID: 21121745.

Chang TC, Zeitels LR, Hwang HW, Chivukula RR, Wentzel EA, Dews M, Jung J, Gao P, Dang CV, Beer MA, Thomas-Tikhonenko A, Mendell JT. Lin-28B transactivation is necessary for Myc-mediated let-7 repression and proliferation. Proc Natl Acad Sci U S A. 2009 Mar 3;106(9):3384-9. Epub 2009 Feb 11. PubMed PMID: 19211792; PubMed Central PMCID: PMC2651245.

Cronin JC, Wunderlich J, Loftus SK, Prickett TD, Wei X, Ridd K, Vemula S, Burrell AS, Agrawal NS, Lin JC, Banister CE, Buckhaults P, Rosenberg SA, Bastian BC, Pavan WJ, Samuels Y. Frequent mutations in the MITF pathway in melanoma. Pigment Cell Melanoma Res. 2009 Aug;22(4):435-44. Epub 2009 Apr 29. PubMed PMID: 19422606; PubMed Central PMCID: PMC2728363.

2008 (MD-PhD student bolded/italics)

Zhou Q, Agoston AT, Atadja P, Nelson WG, Davidson NE. Inhibition of histone deacetylases promotes ubiquitin-dependent proteasomal degradation of DNA methyltransferase 1 in human breast cancer cells. Mol Cancer Res. 2008 May;6(5):873-83. PubMed PMID: 18505931.

Awad MM, Calkins H, Judge DP; Medscape. Mechanisms of disease: molecular genetics of arrhythmogenic right ventricular dysplasia/cardiomyopathy. Nat Clin Pract Cardiovasc Med. 2008 May;5(5):258-67. Epub 2008 Apr 1. Review. PubMed PMID: 18382419; PubMed Central PMCID: PMC2822988.

Andrade A, Bailey JR, Xu J, Philp FH, Quinn TC, Williams TM, Ray SC, Thomas DL, Blankson JN. CD4+ T cell depletion in an untreated HIV type 1-infected human leukocyte antigen-B*5801-positive patient with an undetectable viral load. Clin Infect Dis. 2008 Apr 15;46(8):e78-82. PubMed PMID: 18444844; PubMed Central PMCID: PMC2664682.

Bailey JR, Brennan TP, O’Connell KA, Siliciano RF, Blankson JN. Evidence of CD8+ T-cell-mediated selective pressure on human immunodeficiency virus type 1 nef in HLA-B*57+ elite suppressors. J Virol. 2009 Jan;83(1):88-97. Epub 2008 Oct 22. PubMed PMID: 18945771; PubMed Central PMCID: PMC2612327.

Gandhi SK, Siliciano JD, Bailey JR, Siliciano RF, Blankson JN. Role of APOBEC3G/F-mediated hypermutation in the control of human immunodeficiency virus type 1 in elite suppressors. J Virol. 2008 Mar;82(6):3125 -30. Epub 2007 Dec 12. PubMed PMID: 18077705; PubMed Central PMCID: PMC2259015.

Bailey JR, O’Connell K, Yang HC, Han Y, Xu J, Jilek B, Williams TM, Ray SC, Siliciano RF, Blankson JN. Transmission of human immunodeficiency virus type 1 from a patient who developed AIDS to an elite suppressor. J Virol. 2008 Aug;82(15):7395-410. Epub 2008 May 21. PubMed PMID: 18495769; PubMed Central PMCID: PMC2493308.

Arepally A, Barnett BP, Patel TH, Howland V, Boston RC, Kraitchman DL, Malayeri AA. Catheter-directed gastric artery chemical embolization suppresses systemic ghrelin levels in porcine model. Radiology. 2008 Oct;249(1):127-33. Erratum in: Radiology. 2008 Dec;249(3):1083. Patel, Tarek T [corrected to Patel, Tarak H]. PubMed PMID: 18796671; PubMed Central PMCID: PMC2657856.

Bassik N, Abebe BT, Gracias DH. Solvent driven motion of lithographically fabricated gels. Langmuir. 2008 Nov 4;24(21):12158-63. Epub 2008 Sep 30. PubMed PMID: 18823132.

Bassik, N. and D. H. Gracias. 3D Lithographically Structured Self-Assembled Biomedical Devices in Nanomedicine Science and Engineering: Design of Capsules, Motors, Implants, Robots & Devices, editor Mark Schultz, Artech House. 2008.

Randhawa JS, Leong TG, Bassik N, Benson BR, Jochmans MT, Gracias DH. Pick-and-place using chemically actuated microgrippers. J Am Chem Soc. 2008 Dec 24;130(51):17238-9. PubMed PMID: 19053402.

Burger IM, Kass NE, Sunshine JH, Siegelman SS. The use of CT for screening: a national survey of radiologists’ activities and attitudes. Radiology. 2008 Jul;248(1):160-8. Epub 2008 May 15. PubMed PMID: 18483231; PubMed Central PMCID: PMC3110656.

Aich U, Campbell CT, Elmouelhi N, Weier CA, Sampathkumar SG, Choi SS, Yarema KJ. Regioisomeric SCFA attachment to hexosamines separates metabolic flux from cytotoxicity and MUC1 suppression. ACS Chem Biol. 2008 Apr 18;3(4):230-40. Epub 2008 Mar 14. PubMed PMID: 18338853.

Campbell CT, Aich U, Weier CA, Wang JJ, Choi SS, Wen MM, Maisel K, Sampathkumar SG, Yarema KJ. Targeting pro-invasive oncogenes with short chain fatty acid-hexosamine analogues inhibits the mobility of metastatic MDA-MB-231 breast cancer cells. J Med Chem. 2008Dec 25;51(24):8135-47. PubMed PMID:19053749; PubMed Central PMCID: PMC2657678.

Cheong R, Hoffmann A, Levchenko A. Understanding NF-kappaB signaling via mathematical modeling. Mol Syst Biol. 2008;4:192. Epub 2008 May 6. PubMed PMID:18463616; PubMed Central PMCID: PMC2424295.

Cheong R, Levchenko A. Wires in the soup: quantitative models of cell signaling. Trends Cell Biol. 2008 Mar;18(3):112-8. Epub 2008 Feb 21. Review. PubMed PMID: 18291655.

Cheong R, Wang CJ, Levchenko A. High content cell screening in a microfluidic device. Mol Cell Proteomics. 2009 Mar;8(3):433-42. Epub 2008 Oct 24. PubMed PMID:18953019; PubMed Central PMCID:  PMC2649807.

Chivukula RR, Mendell JT. Circular reasoning: microRNAs and cell-cycle control. Trends Biochem Sci. 2008 Oct;33(10):474-81. Epub 2008 Sep 5. Review. PubMed PMID: 18774719; PubMed Central PMCID: PMC2824243.

Allen G, Simpkins CE, Segev D, Warren D, King K, Taube J, Locke J, Baldwin W, Haas M, Chivukula R, Montgomery RA. Rapid accomodation of an A1 renal allograft 2009;162:35-46. Epub 2008 Oct 31. PubMed PMID: 19001812.

Soderlund KA, Chivukula RR, Russell SD, Conte JV, Mudd JO, Halushka MK. Prognostic value of left ventricular apical tissue removed for HeartMate II left ventricular assist device placement. Cardiovasc Pathol. 2009 Jul-Aug;18(4):217-22. Epub 2008 Aug 15. PubMed PMID: 18706833.

Downey AS, Chong CR, Graczyk TK, Sullivan DJ. Efficacy of pyrvinium pamoate against Cryptosporidium parvum infection in vitro and in a neonatal mouse model. Antimicrob Agents Chemother. 2008 Sep;52 (9):3106-12. Epub 2008 Jun 30. PubMed PMID: 18591280; PubMed Central PMCID: PMC2533469.

Ren YR, Pan F, Parvez S, Fleig A, Chong CR, Xu J, Dang Y, Zhang J, Jiang H, Penner R, Liu JO. Clofazimine inhibits human Kv1.3 potassium channel by perturbing calcium oscillation in T lymphocytes. PLoS One. 2008;3(12):e4009. Epub 2008 Dec 23. PubMed PMID: 19104661; PubMed Central PMCID: PMC2602975.

Leary RJ, Lin JC, Cummins J, Boca S, Wood LD, Parsons DW, Jones S, Sjöblom T,  Park BH, Parsons R, Willis J, Dawson D, Willson JK, Nikolskaya T, Nikolsky Y, Kopelovich L, Papadopoulos N, Pennacchio LA, Wang TL, Markowitz SD, Parmigiani G,Kinzler KW, Vogelstein B, Velculescu VE. Integrated analysis of homozygous deletions, focal amplifications, and sequence alterations in breast and colorectal cancers. Proc Natl Acad Sci U S A. 2008 Oct 21;105(42):16224-9. Epub 2008 Oct 13. PubMed PMID: 18852474; PubMed Central PMCID: PMC2571022.

Dowdy DW, O’Brien MA, Bishai D. Cost-effectiveness of novel diagnostic tools for the diagnosis of tuberculosis. Int J Tuberc Lung Dis. 2008 Sep;12(9):1021-9. PubMed PMID: 18713499.

Nachega JB, Hislop M, Dowdy DW, Gallant JE, Chaisson RE, Regensberg L, Maartens G. Efavirenz versus nevirapine-based initial treatment of HIV infection: clinical and virological outcomes in Southern African adults. AIDS. 2008 Oct 18;22(16):2117-25. PubMed PMID: 18832875; PubMed Central PMCID: PMC2659649.

Dowdy, D.W., R.E. Chaisson, G. Maartens, E.L. Corbett, and S.E. Dorman. 2008. Impact of enhanced tuberculosis diagnosis in South Africa: a mathematical model of expanded culture and drug susceptibility testing. Proc. Natl. Acad. Sci. U. S. A. 105:11293-11298. PMID:18695217. PMCID:PMC2516234.

Dowdy DW, Dinglas V, Mendez-Tellez PA, Bienvenu OJ, Sevransky J, Dennison CR, Shanholtz C, Needham DM. Intensive care unit hypoglycemia predicts depression during early recovery from acute lung injury. Crit Care Med. 2008 Oct;36(10):2726-33. PubMed PMID: 18766087; PubMed Central PMCID: PMC2605796.

Dowdy DW, Lourenço MC, Cavalcante SC, Saraceni V, King B, Golub JE, Bishai D, Durovni B, Chaisson RE, Dorman SE. Impact and cost-effectiveness of culture for diagnosis of tuberculosis in HIV-infected Brazilian adults. PLoS One. 2008;3(12):e4057. Epub 2008 Dec 29. PubMed PMID: 19129940; PubMed Central PMCID: PMC2614861.

Basu AC, Tsai GE, Ma CL, Ehmsen JT, Mustafa AK, Han L, Jiang ZI, Benneyworth MA, Froimowitz MP, Lange N, Snyder SH, Bergeron R, Coyle JT. Targeted disruption of serine racemase affects glutamatergic neurotransmission and behavior. Mol Psychiatry. 2009 Jul;14(7):719-27. Epub 2008 Dec 9. Erratum in: Mol Psychiatry. 2010 Nov;15(11):1122. PubMed PMID: 19065142; PubMed Central PMCID: PMC2786989.

Eliades SJ, Wang X. Chronic multi-electrode neural recording in free-roaming monkeys. J Neurosci Methods. 2008 Jul 30;172(2):201-14. Epub 2008 May 16. PubMed PMID: 18572250; PubMed Central PMCID: PMC2553366.

Eliades SJ, Wang X. Neural substrates of vocalization feedback monitoring in primate auditory cortex. Nature. 2008 Jun 19;453(7198):1102-6. Epub 2008 May 4.PubMed PMID: 18454135.

Kamiya A, Tan PL, Kubo K, Engelhard C, Ishizuka K, Kubo A, Tsukita S, Pulver AE, Nakajima K, Cascella NG, Katsanis N, Sawa A. Recruitment of PCM1 to the centrosome by the cooperative action of DISC1 and BBS4: a candidate for psychiatric illnesses. Arch Gen Psychiatry. 2008 Sep;65(9):996-1006. PubMed PMID: 18762586; PubMed Central PMCID: PMC2727928.

Congdon NG, Patel N, Esteso P, Chikwembani F, Webber F, Msithini RB, Ratcliffe A. The association between refractive cutoffs for spectacle provision and visual improvement among school-aged children in South Africa. Br J Ophthalmol. 2008 Jan;92(1):13-8. Epub 2007 Jun 25. PubMed PMID: 17591673.

Gandhi SK, Siliciano JD, Bailey JR, Siliciano RF, Blankson JN. Role of APOBEC3G/F-mediated hypermutation in the control of human immunodeficiency virus type 1 in elite suppressors. J Virol. 2008 Mar;82(6):3125 -30. Epub 2007 Dec 12. PubMed PMID: 18077705; PubMed Central PMCID: PMC2259015.

Li Y, Fan X, Goodwin CR, Laterra J, Xia S. Hepatocyte growth factor enhances death receptor-induced apoptosis by up-regulating DR5. BMC Cancer. 2008 Nov 7;8:325. PubMed PMID: 18992144; PubMed Central PMCID: PMC2590617.

An W, Han JS, Schrum CM, Maitra A, Koentgen F, Boeke JD. Conditional activation of a single-copy L1 transgene in mice by Cre. Genesis. 2008 Jul;46(7):373-83. PubMed PMID: 18615728; PubMed Central PMCID: PMC2614868.

Harris, T.J., E.L. Hipkiss, S. Borzillary, S. Wada, J.F. Grosso, H.R. Yen, D. Getnet, T.C. Bruno, M.V. Goldberg, D.M. Pardoll, T.L. DeWeese, and C.G. Drake. 2008. Radiotherapy augments the immune response to prostate cancer in a time-dependent manner. Prostate 68:1319-1329. PMID:18561247.

Harris TA, Yamakuchi M, Ferlito M, Mendell JT, Lowenstein CJ. MicroRNA-126 regulates endothelial expression of vascular cell adhesion molecule 1. Proc Natl Acad Sci U S A. 2008 Feb 5;105(5):1516-21. Epub 2008 Jan 28. PubMed PMID: 18227515; PubMed Central PMCID: PMC2234176.

Healy ZR, Zhu F, Stull JD, Konstantopoulos K. Elucidation of the signaling network of COX-2 induction in sheared chondrocytes: COX-2 is induced via a Rac/MEKK1/MKK7/JNK2/c-Jun-C/EBPbeta-dependent pathway. Am J Physiol Cell Physiol. 2008 May;294(5):C1146-57. Epub 2008 Mar 26. PubMed PMID: 18367585.

Howard DL, Strobino D, Sherman SG, Crum RM. Timing of incarceration during pregnancy and birth outcomes: exploring racial differences. Matern Child Health J. 2009 Jul;13(4):457-66. Epub 2008 Jun 17. PubMed PMID: 18561009.

Howard DL, Strobino D, Sherman S, Crum R. Within prisons, is there an association between the quantity of prenatal care and infant birthweight?Paediatr Perinat Epidemiol. 2008 Jul;22(4):369-78. PubMed PMID: 18578751.

Herman JM, Swartz MJ, Hsu CC, Winter J, Pawlik TM, Sugar E, Robinson R, LaheruDA, Jaffee E, Hruban RH, Campbell KA, Wolfgang CL, Asrari F, Donehower R, HidalgoM, Diaz LA Jr, Yeo C, Cameron JL, Schulick RD, Abrams R. Analysis offluorouracil-based adjuvant chemotherapy and radiation after pancreaticoduodenectomy for ductal adenocarcinoma of the pancreas: results of a large, prospectively collected database at the Johns Hopkins Hospital. J Clin Oncol. 2008 Jul 20;26(21):3503-10. PubMed PMID: 18640931.

Köttgen A, Hsu CC, Coresh J, Shuldiner AR, Berthier-Schaad Y, Gambhir TR, Smith MW, Boerwinkle E, Kao WH. The association of podocin R229Q polymorphism with increased albuminuria or reduced estimated GFR in a large population-based sample of US adults. Am J Kidney Dis. 2008 Nov;52(5):868-75. Epub 2008 May 21. PubMed PMID: 18499321; PubMed Central PMCID: PMC2597304.

Sapkota A, Hsu CC, Zaridze D, Shangina O, Szeszenia-Dabrowska N, Mates D, Fabiánová E, Rudnai P, Janout V, Holcatova I, Brennan P, Boffetta P, Hashibe M. Dietary risk factors for squamous cell carcinoma of the upper aerodigestive tract in central and eastern Europe. Cancer Causes Control. 2008 Dec;19(10):1161-70. Epub 2008 May 30. PubMed PMID: 18512121.

Moore LE, Hung R, Karami S, Boffetta P, Berndt S, Hsu CC, Zaridze D, Janout V, Kollarova H, Bencko V, Navratilova M, Szeszenia-Dabrowska N, Mates D, Mukeria A, Holcatova I, Yeager M, Chanock S, Garcia-Closas M, Rothman N, Chow WH, Brennan P. Folate metabolism genes, vegetable intake and renal cancer risk in central Europe. Int J Cancer. 2008 Apr 15;122(8):1710-5. PubMed PMID: 18098291.

Chakraborty A, Koldobskiy MA, Sixt KM, Juluri KR, Mustafa AK, Snowman AM, van Rossum DB, Patterson RL, Snyder SH. HSP90 regulates cell survival via inositol hexakisphosphate kinase-2. Proc Natl Acad Sci U S A. 2008 Jan 29;105(4):1134-9. Epub 2008 Jan 14. PubMed PMID: 18195352; PubMed Central PMCID: PMC2234104.

Sen N, Hara MR, Kornberg MD, Cascio MB, Bae BI, Shahani N, Thomas B, Dawson TM, Dawson VL, Snyder SH, Sawa A. Nitric oxide-induced nuclear GAPDH activates p300/CBP and mediates apoptosis. Nat Cell Biol. 2008 Jul;10(7):866-73. Epub 2008 Jun 15. PubMed PMID: 18552833; PubMed Central PMCID: PMC2689382.

Jones S, Zhang X, Parsons DW, Lin JC, Leary RJ, Angenendt P, Mankoo P, Carter H, Kamiyama H, Jimeno A, Hong SM, Fu B, Lin MT, Calhoun ES, Kamiyama M, Walter K, Nikolskaya T, Nikolsky Y, Hartigan J, Smith DR, Hidalgo M, Leach SD, Klein AP, Jaffee EM, Goggins M, Maitra A, Iacobuzio-Donahue C, Eshleman JR, Kern SE, Hruban RH, Karchin R, Papadopoulos N, Parmigiani G, Vogelstein B, Velculescu VE, Kinzler KW. Core signaling pathways in human pancreatic cancers revealed by global genomic analyses. Science. 2008 Sep 26;321(5897):1801-6. Epub 2008 Sep 4. PubMed PMID: 18772397; PubMed Central PMCID:PMC2848990.

Yu X, Lin J, Zack DJ, Mendell JT, Qian J. Analysis of regulatory network topology reveals functionally distinct classes of microRNAs. Nucleic Acids Res. 2008 Nov;36(20):6494-503. Epub 2008 Oct 15. PubMed PMID:18927108; PubMed Central PMCID: PMC2582613.

Lin J, Li M. Molecular profiling in the age of cancer genomics. Expert Rev Mol Diagn. 2008 May;8(3):263-76. Review. PubMed PMID: 18598106.

Leary RJ, Lin JC, Cummins J, Boca S, Wood LD, Parsons DW, Jones S, Sjöblom T, Park BH, Parsons R, Willis J, Dawson D, Willson JK, Nikolskaya T, Nikolsky Y, Kopelovich L, Papadopoulos N, Pennacchio LA, Wang TL, Markowitz SD, Parmigiani G, Kinzler KW, Vogelstein B, Velculescu VE. Integrated analysis of homozygous deletions, focal amplifications, and sequence alterations in breast and colorectal cancers. Proc Natl Acad Sci U S A. 2008 Oct 21;105(42):16224-9. Epub 2008 Oct 13. PubMed PMID: 18852474; PubMed Central PMCID: PMC2571022.

Parsons DW, Jones S, Zhang X, Lin JC, Leary RJ, Angenendt P, Mankoo P, Carter H, Siu IM, Gallia GL, Olivi A, McLendon R, Rasheed BA, Keir S, Nikolskaya T, Nikolsky Y, Busam DA, Tekleab H, Diaz LA Jr, Hartigan J, Smith DR, Strausberg RL, Marie SK, Shinjo SM, Yan H, Riggins GJ, Bigner DD, Karchin R, Papadopoulos N, Parmigiani G, Vogelstein B, Velculescu VE, Kinzler KW. An integrated genomic analysis of human glioblastoma multiforme. Science. 2008 Sep 26;321(5897):1807-12. Epub 2008 Sep 4. PubMed PMID: 18772396; PubMed Central PMCID: PMC2820389.

Parmigiani G, Boca S, Lin J, Kinzler KW, Velculescu V, Vogelstein B. Design and analysis issues in genome-wide somatic mutation studies of cancer. Genomics. 2009 Jan;93(1):17-21. Epub 2008 Aug 23. Review. PubMed PMID: 18692126; PubMed Central PMCID: PMC2820387.

Arking, D.E., D.J. Cutler, C.W. Brune, T.M. Teslovich, K. West, M. Ikeda, A. Rea, M. Guy, S. Lin, E.H. Cook, and A. Chakravarti. 2008. A common genetic variant in the neurexin superfamily member CNTNAP2 increases familial risk of autism. Am. J. Hum. Genet. 82:160-164. PMID:18179894. PMCID:PMC2253968.

Lin S, Carvalho B, Cutler DJ, Arking DE, Chakravarti A, Irizarry RA. Validation and extension of an empirical Bayes method for SNP calling on Affymetrix microarrays. Genome Biol. 2008 Apr 3;9(4):R63. PubMed PMID: 18387188;  PubMed Central PMCID: PMC2643934.

Deppmann CD, Mihalas S, Sharma N, Lonze BE, Niebur E, Ginty DD. A model for neuronal competition during development. Science. 2008 Apr 18;320(5874):369-73. Epub 2008 Mar 6. PubMed PMID: 18323418.

Amzel LM, Huang CH, Mandelker D, Lengauer C, Gabelli SB, Vogelstein B. Structural comparisons of class I phosphoinositide 3-kinases. Nat Rev Cancer. 2008 Sep;8(9):665-9. PubMed PMID: 18633356; PubMed Central PMCID: PMC2847604.

Huang CH, Mandelker D, Gabelli SB, Amzel LM. Insights into the oncogenic effects of PIK3CA mutations from the structure of p110alpha/p85alpha. Cell Cycle. 2008 May 1;7(9):1151-6. Epub 2008 Feb 27. Review. PubMed PMID: 18418043.

Reti IM, Miskimon M, Dickson M, Petralia RS, Takamiya K, Bland R, Saini J, During MJ, Huganir RL, Baraban JM. Activity-dependent secretion of neuronal activity regulated pentraxin from vasopressin neurons into the systemic circulation. Neuroscience. 2008 Jan 24;151(2):352-60. Epub 2007 Nov 12. PubMed PMID: 18082971; PubMed Central PMCID: PMC2342909.

Yang G, Wu L, Jiang B, Yang W, Qi J, Cao K, Meng Q, Mustafa AK, Mu W, Zhang S, Snyder SH, Wang R. H2S as a physiologic vasorelaxant: hypertension in mice with deletion of cystathionine gamma-lyase. Science. 2008 Oct 24;322(5901):587-90. PubMed PMID: 18948540; PubMed Central PMCID: PMC2749494.

Chakraborty A, Koldobskiy MA, Sixt KM, Juluri KR, Mustafa AK, Snowman AM, van Rossum DB, Patterson RL, Snyder SH. HSP90 regulates cell survival via inositol hexakisphosphate kinase-2. Proc Natl Acad Sci U S A. 2008 Jan 29;105(4):1134-9. Epub 2008 Jan 14. PubMed PMID: 18195352; PubMed Central PMCID: PMC2234104.

Hikida T, Mustafa AK, Maeda K, Fujii K, Barrow RK, Saleh M, Huganir RL, Snyder SH, Hashimoto K, Sawa A. Modulation of D-serine levels in brains of mice lacking PICK1. Biol Psychiatry. 2008 May 15;63(10):997 -1000. Epub 2008 Jan 11. PubMed PMID: 18191108; PubMed Central PMCID: PMC2715963.

Basu AC, Tsai GE, Ma CL, Ehmsen JT, Mustafa AK, Han L, Jiang ZI, Benneyworth MA, Froimowitz MP, Lange N, Snyder SH, Bergeron R, Coyle JT. Targeted disruption of serine racemase affects glutamatergic neurotransmission and behavior. Mol Psychiatry. 2009 Jul;14(7):719-27. Epub 2008 Dec 9. Erratum in: Mol Psychiatry.2010 Nov;15(11):1122. PubMed PMID: 19065142; PubMed Central PMCID: PMC2786989.

Kim HS, Young MJ, Narayan AK, Hong K, Liddell RP, Streiff MB. A comparison of clinical outcomes with retrievable and permanent inferior vena cava filters. J Vasc Interv Radiol. 2008 Mar;19(3):393-9. PubMed PMID: 18295699.

Noah, Y.A. A Cultural Perspective. Johns Hopkins Public Health, 2008.

Rajaii F, Bitzer ZT, Xu Q, Sockanathan S. Expression of the dominant negative retinoid receptor, RAR403, alters telencephalic progenitor proliferation,survival, and cell fate specification. Dev Biol. 2008 Apr 15;316 (2):371-82. Epub 2008 Feb 13. PubMed PMID: 18329011.

Pierfelice TJ, Schreck KC, Eberhart CG, Gaiano N. Notch, neural stem cells, and brain tumors. Cold Spring Harb Symp Quant Biol. 2008;73:367-75. Epub 2008 Nov 6. Review. PubMed PMID: 19022772.

Sedaghat AR, German J, Teslovich TM, Cofrancesco J Jr, Jie CC, Talbot CC Jr, Siliciano RF. Chronic CD4+ T-cell activation and depletion in human immunodeficiency virus type 1 infection: type I interferon-mediated disruption of T-cell dynamics. J Virol. 2008 Feb;82(4):1870-83. Epub 2007 Dec 12. PubMed PMID: 18077723; PubMed Central PMCID: PMC2258719.

Sedaghat AR, Dinoso JB, Shen L, Wilke CO, Siliciano RF. Decay dynamics of HIV-1 depend on the inhibited stages of the viral life cycle. Proc Natl Acad Sci U S A. 2008 Mar 25;105(12):4832-7. Epub 2008 Mar 24. PubMed PMID: 18362342; PubMed Central PMCID: PMC2290747.

Shen L, Peterson S, Sedaghat AR, McMahon MA, Callender M, Zhang H, Zhou Y,Pitt E, Anderson KS, Acosta EP, Siliciano RF. Dose-response curve slope sets class-specific limits on inhibitory potential of anti-HIV drugs. Nat Med. 2008 Jul;14(7):762-6. Epub 2008 Jun 15. PubMed PMID: 18552857; PubMed Central PMCID: PMC2743464.

Sedaghat AR, Siliciano RF, Wilke CO. Low-level HIV-1 replication and the dynamics of the resting CD4+ T cell reservoir for HIV-1 in the setting of HAART. BMC Infect Dis. 2008 Jan 2;8:2. PubMed PMID: 18171475; PubMed Central PMCID: PMC2254415.

Suber TL, Casciola-Rosen L, Rosen A. Mechanisms of disease: autoantigens as clues to the pathogenesis of myositis. Nat Clin Pract Rheumatol. 2008 Apr;4(4):201-9. Epub 2008 Mar 4. Review. PubMed PMID: 18319710.

Suber TL. The Journal of Student National Medical Association-articles written in the following issues: Universalized Healthcare, Global Warming and Superinfections, War and Health, and The Pipeline and Physician- Researcher Initiative Issue from Spring 2007-Winter 2008. “What You’re Writing: A Day’s Work.” Urbanite. October 2007 Issue No 40.

Nazarian, S., A. Kolandaivelu, M.M. Zviman, G.R. Meininger, R. Kato, R.C. Susil, A. Roguin, T.L. Dickfeld, H. Ashikaga, H. Calkins, R.D. Berger, D.A. Bluemke, A.C. Lardo, and H.R. Halperin. 2008. Feasibility of realtime magnetic resonance imaging for catheter guidance in electrophysiology studies. Circulation 118:223-229. PMID:18574048.

Tadross MR, Dick IE, Yue DT. Mechanism of local and global Ca2+ sensing by calmodulin in complex with a Ca2+ channel. Cell. 2008 Jun 27;133(7):1228-40. PubMed PMID: 18585356.

Dick IE, Tadross MR, Liang H, Tay LH, Yang W, Yue DT. A modular switch for spatial Ca2+ selectivity in the calmodulin regulation of CaV channels. Nature. 2008 Feb 14;451(7180):830-4. Epub 2008 Jan 30. PubMed PMID: 18235447.

Kim PS, Armstrong TD, Song H, Wolpoe ME, Weiss V, Manning EA, Huang LQ, Murata S, Sgouros G, Emens LA, Reilly RT, Jaffee EM. Antibody association with HER-2/neu-targeted vaccine enhances CD8 T cell responses in mice through Fc-mediated activation of DCs. J Clin Invest. 2008 May;118(5):1700-11. PubMed PMID: 18398507; PubMed Central PMCID: PMC2289797.

Wickramasinghe SR, Alvania RS, Ramanan N, Wood JN, Mandai K, Ginty DD. Serum response factor mediates NGF-dependent target innervation by embryonic DRG sensory neurons. Neuron. 2008 May 22;58 (4):532-45. PubMed PMID: 18498735; PubMed Central PMCID: PMC2689374.

Newbern J, Zhong J, Wickramasinghe RS, Li X, Wu Y, Samuels I, Cherosky N, Karlo JC, O’Loughlin B, Wikenheiser J, Gargesha M, Doughman YQ, Charron J, Ginty DD, Watanabe M, Saitta SC, Snider WD, Landreth GE. Mouse and human phenotypes indicate a critical conserved role for ERK2 signaling in neural crest development. Proc Natl Acad Sci U S A. 2008 Nov 4;105(44):17115-20. Epub 2008 Oct 24. PubMed PMID: 18952847; PubMed Central PMCID: PMC2579387.

Leary RJ, Lin JC, Cummins J, Boca S, Wood LD, Parsons DW, Jones S, Sjöblom T, Park BH, Parsons R, Willis J, Dawson D, Willson JK, Nikolskaya T, Nikolsky Y, Kopelovich L, Papadopoulos N, Pennacchio LA, Wang TL, Markowitz SD, Parmigiani G, Kinzler KW, Vogelstein B, Velculescu VE. Integrated analysis of homozygous deletions, focal amplifications, and sequence alterations in breast and colorectal cancers. Proc Natl Acad Sci U S A. 2008 Oct 21;105(42):16224-9. Epub 2008 Oct 13. PubMed PMID: 18852474; PubMed Central PMCID: PMC2571022.

Xu R, Sciubba DM, Gokaslan ZL, Bydon A. Ossification of the ligamentum flavum in a Caucasian man. J Neurosurg Spine. 2008 Nov;9(5):427-37. PubMed PMID: 18976173.

Bastian, P.J., J. Ellinger, A. von Rucker, S.C. Muller, S. Yegnasubramanian, W.G. Nelson, and C.G. Stief. 2008. CpG island hypermethylation of the DNA : Perspectives of a molecular biomarker for prostate cancer. Urologe A. 47:1205-1207. PMID:18651120.

Bastian, P.J., G.S. Palapattu, S. Yegnasubramanian, C.G. Rogers, X. Lin, L.A. Mangold, B. Trock, M.A. Eisenberger, A.W. Partin, and W.G. Nelson. 2008. CpG island hypermethylation profile in the serum of men with clinically localized and hormone refractory metastatic prostate cancer. J. Urol. 179:529-34; discussion 534-5. PMID:18076941.

Netto, G.J., Y. Nakai, M. Nakayama, S. Jadallah, A. Toubaji, N. Nonomura, R. Albadine, J.L. Hicks, J.I. Epstein, S. Yegnasubramanian, W.G. Nelson, and A.M. De Marzo. 2008. Global DNA hypomethylation in intratubular germ cell neoplasia and seminoma, but not in nonseminomatous male germ cell tumors. Mod. Pathol. PMID:18622385.

2007  (MD-PhD student bolded/italics)

Nelson WG, Yegnasubramanian S, Agoston AT, Bastian PJ, Lee BH, Nakayama M, De Marzo AM. Abnormal DNA methylation, epigenetics, and prostate cancer. Front Biosci. 2007 May 1;12:4254-66. Review. PubMed PMID: 17485372.

Agoston AT, Argani P, De Marzo AM, Hicks JL, Nelson WG. Retinoblastoma pathway dysregulation causes DNA methyltransferase 1 overexpression in cancer via MAD2-mediated inhibition of the anaphase-promoting complex. Am J Pathol. 2007 May;170(5):1585-93. PubMed PMID: 17456764; PubMed Central PMCID: PMC1854953.

Awad MM, Devgan L, Kamel IR, Torbensen M, Choti MA. Microwave ablation in a hepatic porcine model: correlation of CT and histopathologic findings. HPB (Oxford). 2007;9(5):357-62. PubMed PMID: 18345319; PubMed Central PMCID: PMC2225513.

Bailey JR, Zhang H, Wegweiser BW, Yang HC, Herrera L, Ahonkhai A, Williams TM, Siliciano RF, Blankson JN. Evolution of HIV-1 in an HLA-B*57-positive patient during virologic escape. J Infect Dis. 2007 Jul 1;196(1):50-5. Epub 2007 May 17. PubMed PMID: 17538883.

Blankson JN, Bailey JR, Thayil S, Yang HC, Lassen K, Lai J, Gandhi SK, Siliciano JD, Williams TM, Siliciano RF. Isolation and characterization of replication-competent human immunodeficiency virus type 1 from a subset of elite suppressors. J Virol. 2007 Mar;81(5):2508-18. Epub 2006 Dec 6. PubMed PMID: 17151109; PubMed Central PMCID: PMC1865922.

Gandhi SK, Siliciano JD, Bailey JR, Siliciano RF, Blankson JN. Role of APOBEC3G/F-mediated hypermutation in the control of human immunodeficiency virus type 1 in elite suppressors. J Virol. 2008 Mar;82(6):3125-30. Epub 2007 Dec 12. PubMed PMID: 18077705; PubMed Central PMCID: PMC2259015.

Walczak P, Kedziorek DA, Gilad AA, Barnett BP, Bulte JW. Applicability and limitations of MR tracking of neural stem cells with asymmetric cell division and rapid turnover: the case of the shiverer dysmyelinated mouse brain. Magn Reson Med. 2007 Aug;58(2):261-9. Erratum in: Magn Reson Med. 2007 Dec;58(6):1299. PubMed PMID: 17654572.

Arepally A, Barnett BP, Montgomery E, Patel TH. Catheter-directed gastric artery chemical embolization for modulation of systemic ghrelin levels in a porcine model: initial experience. Radiology. 2007 Jul;244(1):138-43. PubMed PMID: 17581899.

Barnett BP, Arepally A, Karmarkar PV, Qian D, Gilson WD, Walczak P, Howland V,Lawler L, Lauzon C, Stuber M, Kraitchman DL, Bulte JW. Magnetic resonance-guided, real-time targeted delivery and imaging of magnetocapsules immunoprotecting pancreatic islet cells. Nat Med. 2007 Aug;13(8):986-91. Epub 2007 Jul 29. PubMed PMID: 17660829.

Randall CL, Leong TG, Bassik N, Gracias DH. 3D lithographically fabricated nanoliter containers for drug delivery. Adv Drug Deliv Rev. 2007 Dec 22;59(15):1547-61. Epub 2007 Sep 4. Review. PubMed PMID: 17919768.

Farrag TY, Agrawal N, Sheth S, Bettegowda C, Ewertz M, Kim M, Tufano RP. Algorithm for safe and effective reoperative thyroid bed surgery for recurrent/persistent papillary thyroid carcinoma. Head Neck. 2007 Dec;29(12):1069-74. PubMed PMID: 17563908.

Diaz LA Jr, Foss CA, Thornton K, Nimmagadda S, Endres CJ, Uzuner O, Seyler TM, Ulrich SD, Conway J, Bettegowda C, Agrawal N, Cheong I, Zhang X, Ladenson PW, Vogelstein BN, Mont MA, Zhou S, Kinzler KW, Vogelstein B, Pomper MG. Imaging of musculoskeletal bacterial infections by [124I]FIAU-PET/CT. PLoS One. 2007 Oct 10;2(10):e1007. PubMed PMID: 17925855; PubMed Central PMCID: PMC1994593.

Plomp M, McCaffery JM, Cheong I, Huang X, Bettegowda C, Kinzler KW, Zhou S, Vogelstein B, Malkin AJ. Spore coat architecture of Clostridium novyi NT spores. J Bacteriol. 2007 Sep;189(17):6457-68. Epub 2007 Jun 22. PubMed PMID: 17586633; PubMed Central PMCID: PMC1951917.

Burger I, Schill K, Goodman S. Disclosure of individual surgeon’s performance rates during informed consent: ethical and epistemological considerations. Ann Surg. 2007 Apr;245(4):507-13. PubMed PMID: 17414595; PubMed Central PMCID: PMC1877054.

Campbell CT, Sampathkumar SG, Yarema KJ. Metabolic oligosaccharide engineering: perspectives, applications, and future directions. Mol Biosyst. 2007 Mar;3(3):187-94. Epub 2007 Jan 12. Review. PubMed PMID: 17308665.

Chaudhuri D, Issa JB, Yue DT. Elementary mechanisms producing facilitation of  Cav2.1 (P/Q-type) channels. J Gen Physiol. 2007 May;129(5):385-401. Epub 2007 Apr 16. PubMed PMID: 17438119; PubMed Central PMCID: PMC2154375.

Herzig S, Khan IF, Gründemann D, Matthes J, Ludwig A, Michels G, Hoppe UC, Chaudhuri D, Schwartz A, Yue DT, Hullin R. Mechanism of Ca(v)1.2 channel modulation by the amino terminus of cardiac beta2-subunits. FASEB J. 2007 May;21(7):1527-38. Epub 2007 Feb 8. PubMed PMID: 17289923.

Kaneda A, Wang CJ, Cheong R, Timp W, Onyango P, Wen B, Iacobuzio-Donahue CA, Ohlsson R, Andraos R, Pearson MA, Sharov AA, Longo DL, Ko MS, Levchenko A, Feinberg AP. Enhanced sensitivity to IGF-II signaling links loss of imprinting of IGF2 to increased cell proliferation and tumor risk. Proc Natl Acad Sci U S A. 2007 Dec 26;104(52):20926-31. Epub 2007 Dec 17. PubMed PMID: 18087038; PubMed Central PMCID: PMC2409243.

Chong CR, Auld DS. Catalysis of zinc transfer by D-penicillamine to secondary chelators. J Med Chem. 2007 Nov 1;50(22):5524-7. Epub 2007 Oct 6. PubMed PMID 17918925.

McMahon MA, Jilek BL, Brennan TP, Shen L, Zhou Y, Wind-Rotolo M, Xing S, Bhat S, Hale B, Hegarty R, Chong CR, Liu JO, Siliciano RF, Thio CL. The HBV drug entecavir – effects on HIV-1 replication and resistance. N Engl J Med. 2007 Jun 21;356(25):2614-21. PubMed PMID: 17582071; PubMed Central PMCID: PMC3069686.

Chong CR, Xu J, Lu J, Bhat S, Sullivan DJ Jr, Liu JO. Inhibition of angiogenesis by the antifungal drug itraconazole. ACS Chem Biol. 2007 Apr 24;2(4):263-70. PubMed PMID: 17432820.

Chong CR, Sullivan DJ Jr. New uses for old drugs. Nature. 2007 Aug 9;448(7154):645-6. PubMed PMID: 17687303.

Byrne ST, Gu P, Zhou J, Denkin SM, Chong C, Sullivan D, Liu JO, Zhang Y. Pyrrolidine dithiocarbamate and diethyldithiocarbamate are active against growing and nongrowing persister Mycobacterium tuberculosis. Antimicrob Agents Chemother. 2007 Dec;51(12):4495-7. Epub 2007 Sep 17. PubMed PMID: 17876006; PubMed Central PMCID: PMC2168016.

Sharma D, Cukras AR, Rogers EJ, Southworth DR, Green R. Mutational analysis of S12 protein and implications for the accuracy of decoding by the ribosome. J Mol Biol. 2007 Dec 7;374(4):1065-76. Epub 2007 Oct 6. PubMed PMID: 17967466; PubMed Central PMCID: PMC2200631.

Leary RJ, Cummins J, Wang TL, Velculescu VE. Digital karyotyping. Nat Protoc. 2007;2(8):1973-86. PubMed PMID: 17703209.

Peters BA, St Croix B, Sjöblom T, Cummins JM, Silliman N, Ptak J, Saha S, Kinzler KW, Hatzis C, Velculescu VE. Large-scale identification of novel transcripts in the human genome. Genome Res. 2007 Mar;17(3):287-92. Epub 2007 Jan 31. PubMed PMID: 17267814; PubMed Central PMCID: PMC1800919.

Mizutani K, Yoon K, Dang L, Tokunaga A, Gaiano N. Differential Notch signalling distinguishes neural stem cells from intermediate progenitors. Nature. 2007 Sep 20;449(7160):351-5. Epub 2007 Aug 26. PubMed PMID: 17721509.

Dickert NW, Sugarman J. Getting the ethics right regarding research in the emergency setting: lessons from the PolyHeme study. Kennedy Inst Ethics J. 2007 Jun;17(2):153-69. Review. PubMed PMID: 18018997.

Dickert N, DeRiemer K, Duffy PE, Garcia-Garcia L, Mutabingwa TK, Sina BJ, Tindana P, Lie R. Ancillary-care responsibilities in observational research: two  cases, two issues. Lancet. 2007 Mar 10;369(9564):874-7. PubMed PMID: 17350458; PubMed Central PMCID: PMC2945388.

Nachega JB, Hislop M, Dowdy DW, Chaisson RE, Regensberg L, Maartens G. Adherence to nonnucleoside reverse transcriptase inhibitor-based HIV therapy and virologic outcomes. Ann Intern Med. 2007 Apr 17;146(8):564-73. PubMed PMID: 17438315.

Stevens RD, Dowdy DW, Michaels RK, Mendez-Tellez PA, Pronovost PJ, Needham DM. Neuromuscular dysfunction acquired in critical illness: a systematic review. Intensive Care Med. 2007 Nov;33(11):1876-91. Epub 2007 Jul 17. Review. PubMed PMID: 17639340.

Mustafa AK, Kumar M, Selvakumar B, Ho GP, Ehmsen JT, Barrow RK, Amzel LM, Snyder SH. Nitric oxide S-nitrosylates serine racemase, mediating feedback inhibition of D-serine formation. Proc Natl Acad Sci U S A. 2007 Feb 20;104(8):2950-5. Epub 2007 Feb 9. PubMed PMID: 17293453; PubMed Central PMCID: PMC1815287.

Esteso P, Castanon A, Toledo S, Rito MA, Ervin A, Wojciechowski R, Congdon NG. Correction of moderate myopia is associated with improvement in self-reported visual functioning among Mexican school-aged children. Invest Ophthalmol Vis Sci. 2007 Nov;48(11):4949-54. PubMed PMID: 17962444.

Congdon NG, Patel N, Esteso P, Chikwembani F, Webber F, Msithini RB, Ratcliffe A. The association between refractive cutoffs for spectacle provision and visual improvement among schoolaged children in South Africa. Br J Ophthalmol. 2008 Jan;92(1):13-8. Epub 2007 Jun 25. PubMed PMID: 17591673.

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Gandhi SK, Siliciano JD, Bailey JR, Siliciano RF, Blankson JN. Role of APOBEC3G/F-mediated hypermutation in the control of human immunodeficiency virus type 1 in elite suppressors. J Virol. 2008 Mar;82(6):3125-30. Epub 2007 Dec 12. PubMed PMID: 18077705; PubMed Central PMCID: PMC2259015.

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Harris TJ, Grosso JF, Yen HR, Xin H, Kortylewski M, Albesiano E, Hipkiss EL, Getnet D, Goldberg MV, Maris CH, Housseau F, Yu H, Pardoll DM, Drake CG. Cutting edge: An in vivo requirement for STAT3 signaling in TH17 development and TH17-dependent autoimmunity. J Immunol. 2007 Oct 1;179(7):4313-7. PubMed PMID:17878325.

Napier SL, Healy ZR, Schnaar RL, Konstantopoulos K. Selectin ligand expression regulates the initial vascular interactions of colon carcinoma cells: the roles of CD44v and alternative sialofucosylated selectin ligands. J Biol Chem. 2007 Feb 9;282(6):3433-41. Epub 2006 Nov 29. PubMed PMID: 17135256.

Talalay P, Fahey JW, Healy ZR, Wehage SL, Benedict AL, Min C, Dinkova-Kostova AT. Sulforaphane mobilizes cellular defenses that protect skin against damage by UV radiation. Proc Natl Acad Sci U S A. 2007 Oct 30;104(44):17500-5. Epub 2007 Oct 23. PubMed PMID: 17956979; PubMed Central PMCID: PMC2077285.

Mustafa AK, Kumar M, Selvakumar B, Ho GP, Ehmsen JT, Barrow RK, Amzel LM, Snyder SH. Nitric oxide S-nitrosylates serine racemase, mediating feedback inhibition of D-serine formation. Proc Natl Acad Sci U S A. 2007 Feb 20;104(8):2950-5. Epub 2007 Feb 9. PubMed PMID: 17293453; PubMed Central PMCID: PMC1815287.

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Moore LE, Brennan P, Karami S, Hung RJ, Hsu C, Boffetta P, Toro J, Zaridze D, Janout V, Bencko V, Navratilova M, Szeszenia-Dabrowska N, Mates D, Mukeria A, Holcatova I, Welch R, Chanock S, Rothman N, Chow WH. Glutathione S-transferase polymorphisms, cruciferous vegetable intake and cancer risk in the Central and Eastern European Kidney Cancer Study. Carcinogenesis. 2007 Sep;28(9):1960-4. Epub 2007 Jul 7. PubMed PMID: 17617661.

Kim SF, Huang AS, Snowman AM, Teuscher C, Snyder SH. From the Cover: Antipsychotic drug-induced weight gain mediated by histamine H1 receptor-linked activation of hypothalamic AMP-kinase. Proc Natl Acad Sci U S A. 2007 Feb 27;104(9):3456-9. Epub 2007 Feb 20. PubMed PMID: 17360666; PubMed Central PMCID:  PMC1805549.

Chaudhuri D, Issa JB, Yue DT. Elementary mechanisms producing facilitation of Cav2.1 (P/Q-type) channels. J Gen Physiol. 2007 May;129(5):385-401. Epub 2007 Apr 16. PubMed PMID: 17438119; PubMed Central PMCID: PMC2154375.

Allen RH, Cha SL, Kranker LM, Johnson TL, Gurewitsch ED. Comparing mechanical fetal response during descent, crowning, and restitution among deliveries with and without shoulder dystocia. Am J Obstet Gynecol. 2007 Jun;196(6):539.e1-5. PubMed PMID: 17547886.

Gurewitsch ED, Johnson TL, Allen RH. After shoulder dystocia: managing the subsequent pregnancy and delivery. Semin Perinatol. 2007 Jun;31(3):185-95. Review. PubMed PMID: 17531900.

Nelson WG, Yegnasubramanian S, Agoston AT, Bastian PJ, Lee BH, Nakayama M, De Marzo AM. Abnormal DNA methylation, epigenetics, and prostate cancer. Front Biosci. 2007 May 1;12:4254-66. Review. PubMed PMID: 17485372.

Parmigiani G., Lin JC, Boca SM, Sjoblom T, Jones S, Wood LD, Parsons DW, Barber TD, , Buckhaults P, Markowitz SD, Park BH, Bachman KE, Papadopoulos N, Vogelstein B, Kinzler KW, Velculescu VE. (2007) Response to Comments on “The consensus coding sequences of human breast and colorectal cancers”. Science. 2007 Sep 14;317(5844):1500.

Parmigiani G, Lin JC, Boca, S., Sjoblom T, Kinzler K, Velculescu VE, and Vogelstein B. (2007) “Statistical Methods for the Analysis of Cancer Genome Sequencing Data” (October 2007). Johns Hopkins University, Dept. of Biostatistics Working Papers. Working Paper 126.

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Yu X, Lin J, Zack DJ, Qian J. Identification of tissue-specific cis-regulatory modules based on interactions between transcription factors. BMC Bioinformatics. 2007 Nov 9;8:437. PubMed PMID: 17996093; PubMed Central PMCID: PMC2194798.

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Huang CH, Mandelker D, Schmidt-Kittler O, Samuels Y, Velculescu VE, Kinzler KW, Vogelstein B, Gabelli SB, Amzel LM. The structure of a human p110alpha/p85alpha complex elucidates the effects of oncogenic PI3Kalpha mutations. Science. 2007 Dec 14;318(5857):1744-8. PubMed PMID: 18079394.

Reti IM, Miskimon M, Dickson M, Petralia RS, Takamiya K, Bland R, Saini J, During MJ, Huganir RL, Baraban JM. Activity-dependent secretion of neuronal activity regulated pentraxin from vasopressin neurons into the systemic circulation. Neuroscience. 2008 Jan 24;151(2):352-60. Epub 2007 Nov 12. PubMed PMID: 18082971; PubMed Central PMCID: PMC2342909.

Mustafa AK, Kumar M, Selvakumar B, Ho GP, Ehmsen JT, Barrow RK, Amzel LM, Snyder SH. Nitric oxide S-nitrosylates serine racemase, mediating feedback inhibition of D-serineformation. Proc Natl Acad Sci U S A. 2007 Feb 20;104(8):2950-5. Epub 2007 Feb 9. PubMed PMID: 17293453; PubMed Central PMCID: PMC1815287.

Gitlin JN, Narayan AK, Mitchell CA, Akmal AM, Eisner DJ, Peterson LM, Nie D, McClintock TR. A comparative study of conventional mammography film interpretations with soft copy readings of the same examinations. J Digit Imaging. 2007 Mar;20(1):42-52. PubMed PMID: 17191103; PubMed Central PMCID: PMC3043891.

Bosch-Marce M, Okuyama H, Wesley JB, Sarkar K, Kimura H, Liu YV, Zhang H, Strazza M, Rey S, Savino L, Zhou YF, McDonald KR, Na Y, Vandiver S, Rabi A, Shaked Y, Kerbel R, Lavallee T, Semenza GL. Effects of aging and hypoxia-inducible factor-1 activity on angiogenic cell mobilization and recovery of perfusion after limb ischemia. Circ Res. 2007 Dec 7;101(12):1310-8. Epub 2007 Oct 11. PubMed PMID: 17932327.

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Sdrulla AD, Linden DJ. Double dissociation between long-term depression and dendritic spine morphology in cerebellar Purkinje cells. Nat Neurosci. 2007 May;10(5):546-8. Epub 2007 Apr 15. PubMed PMID: 17435753.

Sedaghat AR, Siliciano JD, Brennan TP, Wilke CO, Siliciano RF. Limits on replenishment of the resting CD4+ T cell reservoir for HIV in patients on HAART. PLoS Pathog. 2007 Aug 31;3(8):e122. PubMed PMID: 17784786; PubMed Central PMCID:  PMC1959378.

Chase AJ, Sedaghat AR, German JR, Gama L, Zink MC, Clements JE, Siliciano RF.  Severe depletion of CD4+ CD25+ regulatory T cells from the intestinal lamina propria but not peripheral blood or lymph nodes during acute simian immunodeficiency virus infection. J Virol. 2007 Dec;81(23):12748-57. Epub 2007 Sep 12. PubMed PMID: 17855517; PubMed Central PMCID: PMC2169083.

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Hikida T, Jaaro-Peled H, Seshadri S, Oishi K, Hookway C, Kong S, Wu D, Xue R, Andradé M, Tankou S, Mori S, Gallagher M, Ishizuka K, Pletnikov M, Kida S, Sawa A. Dominant-negative DISC1 transgenic mice display schizophrenia-associated phenotypes detected by measures translatable to humans. Proc Natl Acad Sci U S A. 2007 Sep 4;104(36):14501-6. Epub 2007 Aug 3. PubMed PMID: 17675407; PubMed Central PMCID: PMC1964873.

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Bosch-Marce M, Okuyama H, Wesley JB, Sarkar K, Kimura H, Liu YV, Zhang H, Strazza M, Rey S, Savino L, Zhou YF, McDonald KR, Na Y, Vandiver S, Rabi A,Shaked Y, Kerbel R, Lavallee T, Semenza GL. Effects of aging and hypoxia-inducible factor-1 activity on angiogenic cell mobilization and recovery of perfusion after limb ischemia. Circ Res. 2007 Dec 7;101(12):1310-8. Epub 2007 Oct 11. PubMed PMID: 17932327.

Bhandari R, Saiardi A, Ahmadibeni Y, Snowman AM, Resnick AC, Kristiansen TZ, Molina H, Pandey A, Werner JK Jr, Juluri KR, Xu Y, Prestwich GD, Parang K, Snyder SH. Protein pyrophosphorylation by inositol pyrophosphates is a posttranslational event. Proc Natl Acad Sci U S A. 2007 Sep 25;104(39):15305-10. Epub 2007 Sep 14.  PubMed PMID: 17873058; PubMed Central PMCID: PMC2000531.

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Lin J, Gan CM, Zhang X, Jones S, Sjöblom T, Wood LD, Parsons DW, Papadopoulos  N, Kinzler KW, Vogelstein B, Parmigiani G, Velculescu VE. A multidimensional analysis of genes mutated in breast and colorectal cancers. Genome Res. 2007 Sep;17(9):1304-18. Epub 2007 Aug 10. PubMed PMID: 17693572; PubMed Central PMCID: PMC1950899.

Nelson WG, Yegnasubramanian S, Agoston AT, Bastian PJ, Lee BH, Nakayama M, De Marzo AM. Abnormal DNA methylation, epigenetics, and prostate cancer. Front Biosci. 2007 May 1;12:4254-66. Review. PubMed PMID: 17485372.

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