| Organism | Method |
| Acinetobacter sp. | PFGE |
| Candida (selected species) | PFGE |
| Enterococcus sp. (including VRE) | PFGE |
| E. coli | PFGE or Ribotyping |
| Enterobacter sp. | PFGE |
| Helicobacter pylori | PFGE |
| Klebsiella sp. | PFGE |
| Legionella pneumophila | PFGE |
| M. tuberculosis | RFLP |
| M. avium | RFLP |
| Mycobacterium (selected species) | PFGE |
| Pseudomonas sp. | PFGE |
| Staphylococcus aureus (including MRSA) | PFGE |
| Staphylococcus species (coag neg) | PFGE or Ribotyping |
| S. pneumoniae | PFGE |
| Streptococcus sp. (beta hemolytic) | PFGE |
| Serratia sp. | PFGE |
