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Choreoathetosis, Hypothyroidism, Neonatal Respiratory Distress
Gene: NKX2-1;  chr14q13.3
Syndrome Information
Clinical Description:   

Choreoathetosis, Hypothyroidism, and Neonatal Respiratory Distress (also known as Brain-Lung-Thyroid Syndrome or sometimes TTF1-deficiency Syndrome in older literature) involves (as originally characterized) the brain, lungs, and thyroid to variable degrees.  All three organs do not need to be affected to consider the diagnosis.

Neurologic symptoms include chorea, choreoathetosis, hypotonia and ataxia.  Developmental delays, both global and motor, and mental retardation have also been reported.  Hypothyroidism (sometimes compensated and not overt; as measured by elevated serum thyrotropin) is present in most patients, though the size of the thyroid can be small to normal.  Thyroid agenesis has also been reported.  Lung disease manifests as neonatal respiratory distress that can be fatal or recurrent pulmonary infections.  A significant number of surviving patients go on to develop chronic interstitial lung disease.  Though lung disease is the most infrequent symptom, it accounts for significant patient mortality. 

In one literature review, 50% of patients had brain, lung and thyroid findings; 13% had benign chorea only, and 6% had thyroid and lung or thyroid only symptoms. 

Inheritance Pattern:  Autosomal Dominant
Genotype-Phenotype Correlation:
None known
Test Information
Test Method:  Bidirectional sequencing of the coding regions and intron-exon boundaries of NKX2-1; Multiplex ligation-dependent probe amplification (MLPA) for gene deletions
Clinical Utility: Identification of causative mutations in known or highly suspicious cases of Choreoathetosis, Hypothyroidism, Neonatal Respiratory Distress; rule-out of inherited causes of severe respiratory distress and/or hypothyroidism; diagnostic or presymptomatic testing of at-risk relatives of a proband;  predictive prenatal testing when familial mutation is known.   
Clinical Sensitivity:

Of 56 patients included in two published series, 10 had NKX2-1 mutations (18%).  Of the identified mutations, two were gene deletions and 8 were point mutations identifiable by gene sequencing.  Sequencing of the NKX2-1 gene is predicted to detect a mutation in approximately 14% of symptomatic patients.  MLPA analysis is predicted to detect a mutation in approximately 4% of patients. 

Analytic Sensitivity:   

Sequencing:  Greater than 97% for nucleotides analyzed.  All reports will indicate if a certain percentage of nucleotides were not called or were analyzed in a single direction.  

MLPA:  Analytical sensitivity for deletions is estimated to be at least 90%.
 

Sample Requirements: For tests utilizing MLPA, we are only able to accept whole blood drawn in EDTA (purple or lavender top) tubes and Qiagen Puregene extracted DNA.
 
Turn Around Time:   Sequencing: 3-4 weeks
MLPA: up to 4 weeks
Fee and CPT Codes:    Sequencing:  $882 for routine testing on a blood or DNA sample
83891 x 1
83898 x 7
83904 x 14
83909 x 14
83912 x 1

MLPA: $429 for routine testing on a blood or DNA sample
83896 x 3
83900 x 1
83909 x 1
83914 x 1
83912 x 1

Please contact the lab to arrange testing for known mutations on blood or prenatal samples.  

Special Considerations
This test is offered as an automatic reflex to MLPA analysis if the sequencing assay does not detect a potential disease-causing mutation.  NKX2-1 mutations are also associated with Benign Hereditary Chorea.
INFORMED CONSENT from the patient is required prior to ordering a genetic test. The DNA Diagnostic Lab's consent is located on the second page of the requisition form. There is also a patient brochure, "Things Every Patient Should Know Before Consenting to a Genetic Test", available for download.

Helpful Links
Sample Requirements
Requisition and Billing forms
Clinical information on Choreoathetosis, Hypothyroidism, Neonatal Respiratory Distress
 
Link to the General Test Information page for a discussion of the uses and limitations of genetic testing
Patient and Family Page for general resources on genetic testing.